3-X-2(1H)-吡啶酮互变异构体系的理论计算

２（１Ｈ）－吡啶酮类化合物常呈现出诱人的生物活性［１,２］．由于酮式和烯醇式结构具有互变异构化性质,因此确定其互变异构平衡体系中的优势结构及研究取代基对平衡体系的影响,对阐明该类化合物的生物活性及进行构效关系的研究有着重要的意义．当其３－位含有可与２－位羰基或２－位羟基形成分子内氢键的基团时,势必对互变异构平衡产生影响．基于该类化合物的互变异构平衡有着强烈的溶剂效应［３］,本文对３－Ｘ－２（１Ｈ）－吡啶酮（Ｘ＝ＮＯ２,ＮＨ２,ＣＯＯＨ）及其烯醇式互变异构体分别在气相和溶液中进行了理论计算,考察了…     

REACTIVITY OF SINGLET OXYGEN TOWARD LARGE PEPTIDES

Abstract— The reactions of singlet oxygen, ¹O₂, with amino acids and their derivatives have been studied previously. It was found that only five amino acid residues interact readily with ¹O₂. Here we describe its reactions with the large peptides melittin, neuropeptide Y (NPY) and insulin in their native and in their denatured forms. The singlet oxygen quenching by a polypeptide was compared with that of a solution at the same concentration as those of its constituent amino acids, which are known to react efficiently with ¹O₂. It was found that the quenching rate by such a mixture exceeded that of the polypeptides in their native form. The ratio of the rate constants for NPY to that of the corresponding amino acid mixture in solution was 0.75. For melittin in its monomeric form it was 0.83 and for a tetramer of melittin (at high ionic strength) it was 0.70. For native insulin the ratio of the rate constants was 0.55. For oxidized insulin with its -S-S- bridges opened the figure became 0.80. However, the quenching by all the polypeptides in their fully denatured form (in the presence of 6 M urea) equalled that of the corresponding amino acid mixtures. Although polypeptides are generally supposed not to possess a stable secondary structure in solution the effects are explained by shielding of some of the reactive amino acid residues in the chain by temporary folding or incipient secondary structures of the native polypeptide.
It is shown that the kinetics for a homogeneous solution of quenchers applies also to measurements in a polypeptide solution where the quenchers are localized along the polypeptide backbone and thus form clusters in solution.     

A theoretical study of the ion pair SN2 reaction between lithium isocyanates with methyl fluoride with inversion and retention mechanism

This paper is devoted to a detailed theoretical study of an ion pair S_N2 reaction LiNCO+CH₃F in the gas phase and in solution at the level of MP2(full)/6-31+G**//HF/6-31+G**. Two possible reaction mechanisms, inversion and retention, are discussed. There are eight possible reaction pathways. The inversion mechanism is more favorable no matter in the gas phase or in solution based on analyses of the transition structures. Methyl isocyanate should form preferentially in the gas phase and more stable methyl cyanate is the main product in solution. The retardation of the reaction in solvents was attributed to the difference in solvation in the separated reactants and in the transition state.     

Theoretical studies of the tautomeric equilibria for five-member N-heterocycles in the gas phase and in solution

Tautomeric equilibria have been studied for five-member N-heterocycles and their methyl derivatives in the gas phase and in different solvents with dielectric constants of epsilon = 4.7-78.4. The free energy changes differently for tautomers upon solvation as compared to the gas phase, resulting in a shift of the equilibrium constant in solution. Solvents with increasing dielectric constant produce more negative solute-solvent interaction energies and increasing internal energies. The methyl-substituted imidazole and pyrrazole form delicate equilibria between two tautomeric forms. Depending on the solvent, the methyl-substituted triazoles and tetrazole have one or two major tautomers in solution. When estimating the relative solvation free energies by means of an explicit solvent model and using the FEP/MC method, one observes that the preferred tautomers differ in several cases from those predicted by the continuum solvent model. The 1,2-prototropic shift, as an intramolecular tautomerization path, requires about 50 kcal/mol activation energy for imidazole in the gas phase, and this route is also disfavored in a solution. The calculated activation free energy along the intramolecular path is 48-50 kcal/mol in chloroform and water as compared to a literature value of 13.6 kcal/mol for pyrrazole in DMSO. A molecular dynamics computer experiment favors the formation of an imidazole chain in chloroform, making the 1,3-tautomerization feasible along an intermolecular path in nonprotic solvents. In aqueous solution, one strong N-H...Ow hydrogen bond is formed for each species, whereas all other nitrogens in the ring form weaker, N...HwOw type hydrogen bonds. The tetrahydrofuran solvent acts as a hydrogen bond acceptor and forms N-H...Oether bonds. Molecules of the dichloromethane solvent are in favorable dipole-dipole interactions with the solute. The results obtained are useful in the design of N-heterocyclic ligands forming specified hydrogen bonds with protein side chains.     

Solvent effect on analyte charge state,signal intensity,and stability in negative ion electrospray mass spectrometry; implications for the mechanism of negative ion formation

Department of Chemistry, University of New Orleans, New Orleans, Louisiana, USA The effect of solvent composition on negative ion electrospray ionization (ESI) mass spectrometry was examined. The onset potentials for ES1 of a series of chlorinated solvents and methanol were found to be within the range predicted by D. P. H. Smith, based on differences in the surface tension of the solvents used. The tendency toward electric discharge decreased with increasing percent weight of chlorine in the solvent. This effect has been attributed to an increasing propensity for electron capture for more highly chlorinated solvents. Addition of the electron scavenger gas SF, was even more effective at suppressing corona discharge phenomena. In a comparison of ultimate signal intensity obtainable for a test analyte in 10% methanol, the highest signal, which was stable over the widest range of temperatures, was exhibited by chloroform compared to dichloromethane, 1,2-dichloroethane, carbon tetrachloride, and methanol (100%). Chloroform, thus, is a recommended solvent for negative ion electrospray mass spectrometry (ES/MS) when solubility is not a limiting issue. Solvent polarity was shown to exhibit a profound influence on the distribution of charge states in negative ion ES/MS. For both chlorinated and nonchlorinated organic solvents, the higher the solution dielectric constant, the more the charge-state distribution is shifted toward higher charge states. These observations build on the “electrophoretic” mechanism of droplet charging. Solvents with high solution dielectric constants are considered to be most effective at stabilizing multiply charged ions (where charge separation is greatest), and they are likely to increase the level of droplet charging. Solvents with high basicities (gas phase and solution phase) and high proton affinities, yet low dielectric constants, favor lower charge states in ES mass spectra of lipid A and cardiolipin from Escherichia coli. This indicates that gas-phase processes and solvent basicity contribute much less toward ion formation than solution-phase solvation via preferred orientation of the solvent dipole.     

Glycopyrronium-selective electrodes

Liquid-membrane and PVC-membrane glycopyrronium-selective electrodes have been developed. They are based on the ion-pair complexes of glycopyrronium with dicyclohexylnaphthalenesulphonate, di-isopentylnaphthalenesulphonate, di-isobutylnaphthalenesulphonate and tetraphenylborate. Their response is nearly Nernstian over the pH-range 4–8, and the detection limits range from 10⁻⁶M to 10⁻⁵M. For the liquid-membrane electrodes, with homologous membrane solvents, the response slopes are linearly related to the inverse of the dielectric constant of the membrane solvent, according to the formula S = C_o − C₁/ε. A similar relation exists between the slopes for both types of electrode and the dielectric constants of mixed-solvent backgrounds. The electrodes can be used in the potentiometric determination of glycopyrrolate.     

Photophysical properties of β-(1-pyrenyl)ethyl p-cyanobenzoate in binary solvents of isooctane-ethyl acetate and ethyl acetate-acetonitrile

The effects of solvent polarity on the fluorescence spectra and fluorescence decays of β-(1-pyrenyl)ethyl p-cyanobenzoate (P2CN) were investigated in detail using binary solvents consisting of various mixing ratios of isooctane-ethyl acetate or ethyl acetate-acetonitrile (dielectric constants ()=1.94–36.2). Whereas both the intensity and wavelength maxima of an intramolecular exciplex emission (EX) are dependent on the solvent polarity, only the intensity of an emission from the locally excited pyrene (LE) is dependent on the solvents used. When monitored at 377 nm, the picosecond SPC (single photon counting) measurements reveal a slow decay (>150 ns) in addition to a fast decay (<1 ns) of the locally excited P2CN. There are also two decays for the EX which vary the intensity ratios by the monitored wavelength. The decay rate constants, k_EX1 and k_EX2, have a good linear correlation with the dielectric constants of the solvents, indicating that there exist two kinds of exciplexes. It is suggested that the decays of the locally excited-state of P2CN are so fast due to result of the efficient electron transfer that the two kinds of intramolecular exciplexes are formed from the two discrete conformers in the ground state.     

三氟甲基磺酰氟绝缘介质理化特性的分子动力学模拟

采用分子动力学模拟方法, 研究了新型绝缘介质三氟甲基磺酰氟(CF₃SO₂F)的理化特性, 为高压电气设备应用CF₃SO₂F替代SF₆气体提供了理论依据. 基于量子化学计算的分子结构、 内转动、 偶极矩和振动频率等优化设计了mPCFF力场模型, 计算了243~323 K温度范围内CF₃SO₂F的各种气-液相平衡性质(饱和蒸汽压、 密度、 热容、 蒸发焓和临界参数等)与关键输运特性(扩散系数、 介电常数、 黏度和热导率等)基础参数, 并考察了CF₃SO₂F与N₂或CO₂形成混合气体的理化特性. 通过对比SF₆以及C4/CO₂混合环保绝缘气体, 针对混合比、 液化温度、 扩散和热导等因素提出了CF₃SO₂F的电气设备应用建议.     

Vibrational spectra and normal coordinate analysis of CF3 compounds Part XLVII. Vibrational spectra, normal coordinate analysis and electron diffraction investigation of CF3SiH3 and its deuterated varieties

The molecular structure of CF₃SiH₃ in the gas phase has been determined by electron diffraction analysis. Combined with a B₀ value derived from high resolution infrared spectra, this yielded r(SiC), 1.923(3) Å, r(SiH) 1.482(5) Å, r(CF) 1.348(1) Å, FCF 106.7(5)° and HSiH 110.3(10)° (r° values). The gas phase infrared and liquid phase Raman spectra of CF₃SiH₃, CF₃SiH₂D, CF₃SiD₃ have been measured and assigned, and force constants have been calculated by means of a normal coordinate analysis based on 52 experimental frequencies. The weakness of the SiC bond is confirmed by the low f(SiC) value of 2.54 N cm⁻¹. Infrared spectra recorded with a resolution of 0.04 cm⁻¹ at 240 K revealed rotational structure of vibrational bands. Rotational analyses of most parallel and a few perpendicular bands of CF₃SiH₃ and CF₃SiD₃ have been performed. Ground and excited state vibrational parameters have been obtained and used as supplementary data for the determination of the harmonic force field. Strong blending of all bands due to hot band cascades was noted.     

How to drive imine–enamine tautomerism of pyronic derivatives of biological interest – A theoretical and experimental study of substituent and solvent effects

An investigation of the tautomerism of five series of aminated pyronic compounds of pharmacological interest was carried out using NMR experiments and standard quantum mechanical B3LYP/6-311+G** calculations. The obtained results indicate that among four possible tautomers, imine and enamine forms are the two predominating ones in the gas phase as well as in solution. Depending on the nature of the substituting group, the enamine or the imine form is the most stable tautomer, the calculations being in agreement with experiment. The calculated equilibrium constants in the gas phase and in solution show that the enamine form is stabilized by polar solvents, in all cases. NBO analysis explains well the predominance of a form over another one when changing a substituting group. We give indications on how to favour the imine form which is preferred for synthesis purposes.     

H_2O对SO_2在CaO表面上吸附的影响理论研究

采用密度泛函理论研究了H_2O对SO_2在CaO(001)表面上吸附的影响。结果表明,以四种形式(-H_2O、-H、-OH和-H-OH)存在的H_2O使SO_2在CaO表面上的吸附构型发生改变。SO_2在不同形式H_2O基团邻位吸附时,-H使S原子的p轨道态密度峰明显左移且吸附能比洁净表面大90 kJ/mol,其余基团表面吸附能无明显变化;SO_2吸附于-OH和-H-OH生成HSO_3基团,吸附能相比于洁净表面较小,可能作为暂态结构;SO_2吸附于-H_2O生成SO_3基团,H_2O断键生成的H基团起主要吸附作用,CaO表面上生成类似Ca(OH)_2的局部结构且吸附能比洁净表面大45 kJ/mol。     

Dielectric and elastic properties of a nematic phase induced by charge transfer interaction in a binary system containing disc-shaped molecules

The dielectric constants and the elastic coefficients for splay (K₁) and bend (K₃) of the charge transfer induced nematic (N_c) phase of tridecyl pentakis(phenylethynyl)phenyl ether (1) doped with different amounts of 2,4,7-trinitrofluorenone (2) were determined by studying the electric field induced bend deformation using the capacitance method. A negative dielectric anisotropy was observed. For the bend elastic constant K₃ values up to 22 × 10^-12 N are found which are one order of magnitude higher than the respective values of discotic nematic (N_D) phases. Values of 0·6-0·8 are obtained for the ratio K₁/K₃; these show a minimum for the equimolar complex.     

Investigation of keto–enol tautomerism in tetraketonate ligands

Molecular structure, vibration analysis, and natural bond orbital study of four derivatives of tetraketonate ligand were investigated in three different solvents using density functional theory B3LYP/6-31++G** method. The solution phase studies were carried out using an Onsager model. According to the obtained results the enol form of the ligands is more stable than keto form, even in solvents with high dielectric constant such as DMSO. This result is also confirmed experimentally using NMR studies for tetraacetylethane. Their stabilities are due to the presence of hydrogen bonding in the enol tautomers. A comparison among different possible enol forms of the substituted tetraketonate ligands demonstrated that three factors control the stability of the compounds as hydrogen bonding, steric hindrance, and charge distribution. The effectiveness of each of these factors on the stability of ligands depends on the nature of the substituent attached to the ligand.     

Electronic structure, ionization potential, and electron affinity of the enzyme cofactor (6R)-5,6,7,8-tetrahydrobiopterin in the gas phase, solution, and protein environments

(6R)-5,6,7,8-Tetrahydrobiopterin (BH(4)) is a key cofactor involved in the electron transfer to the P(450) heme of nitric oxide synthase. We calculated the electronic structure of the neutral, cationic, and anionic forms of BH(4) in the gas phase, in solution (both dielectric and explicit water), and in the protein environment using density functional theory (B3LYP/6-31+G(d,p)). Subsequently, we derived the ionization potential (IP) and electron affinity (EA) of the cofactor in these chemical environments. We found that the electronic structure of BH(4) is susceptible to the presence of an external electric field and that conformational changes in the structure of BH(4) alone do not affect its electronic structure significantly. In the gas phase, water, and protein environments neutral BH(4) is the most stable species, while in the dielectric environment the anion becomes the most stable species. The IP of BH(4) in the protein environment is about half of that in the gas phase, and its EA is about 5 times smaller than that in the gas phase. Our results indicate that changes in the external electric field created by moving charged amino acid residues around BH(4) may lead to configurations that have the BH(4) ion as stable as or more stable than the neutral form, thus facilitating the electron transfer.     

七氟异丁腈负离子结构与反应活性的理论研究

新型环保绝缘气体七氟异丁腈(C4)在高压输电应用中备受关注. 本文采用多种高精度量子化学理论方法研究了C4吸附电子后形成C4^-负离子的结构、 光谱、 寿命以及与CO₂的反应机理和动力学. 结果表明, 电子进入C≡N的π^*反键轨道, 通过弯曲C—C=N形成C4^-负离子, 绝热电子亲合能的最佳预测值为0.30 eV. 在 0~2 eV范围内C4^-具有显著的光电子吸收峰, 亚稳态C4^-负离子经约9 kJ/mol能垒断裂C—F键生成稳定的长寿命[F...(CF₃)₂CCN]^-中间体. C4^-+CO₂反应存在进攻F或CN上的C和N 3种复合-解离机理, 在电气应用条件下, 以CO₂进攻氰基CN途径为主, 诱发负电荷从CN向CO₂转移.     

On the nature of the fluorescent state of methylated indole derivatives

A quantitative study has been made of the solvent effects on the fluorescence properties of 1- and 3-methyl indole, with the aim of further understanding the origin of the unusually large Stokes shift in polar solvents. For the derivatives considered here the fluorescence transition probability is decreased in solvents of moderate and high polarities, and the spectrum shifts to the red. The data (in two-component, solute and solvent, systems) can be interpreted on the basis of the stabilisation, by solvent-solute relaxation, of a state with an increased charge-transfer character, relative to the initially excited state. Å consideration of the decay data for other indole derivatives suggests that this state has its origin in the ¹L₄ state (S₂ in non-polar media). Thus we conclude that the appropriate label of the fluorescent state of many substituted indoles in polar solvents is ¹L_a/CT. This is consistent with the observed solvent, temperature, time and substituent dependence of the decay kinetics of these derivatives.     

Dielectric characterization of the B7 and a BX phase

The first clear experimental evidence of a dielectric relaxation in the B₇ phase is given. The associated molecular process is probably the reorientation of the bent-shaped molecules about the long molecular axis. It is also shown that the dielectric constant strongly increases at the phase transition I-B₇ pointing to a co-operative motion of ferroelectric clusters. Furthermore, a phase transition B₇-B_X is observed. The values of about 10 for the high frequency limit of the dielectric constants of the B₇ and B_X phases and the static dielectric constants of the isotropic phase are in agreement. Thus, in all the phases the main dipoles can reorient faster than 10^-8 s, i.e. the experimental limit. Only in the supercooled B_X phase were the dynamics of the transversal dipoles measured. Using atomic force microscopy, focal-conic domains modulated by parallel lines have been observed at room temperature.     

An ab initio SCF study on the tautomerisation of the 8-oxo-guanine and xanthine

All possible H₉-tautomers of 8-oxo-guanine and xanthine were studied by means of PM3 semiempirical and DFT (density functional theory) quantum chemistry methods. Additionally, the five most stable tautomers of both guanine derivatives were estimated on 3-21G, 6-31G, 6-31G^** and MP2 (6-31G^**) ab initio levels. The impact of the environment polarity on the tautomeric equilibrium was also taken into account. Among the variety of tautomeric isomers most probable are diketo forms of both studied derivatives in non-polar and polar surroundings.

The tautomeric equilibrium was unchanged after connection of the sugar backbone. The most preferred diketo forms of 8-oxo-guanosine and xanthidine are in syn conformations both in polar and non-polar environments. The increase of the syn conformations over anti ones may have the source in the formation of the internal hydrogen bonds between H′5 and N₃ atoms. The calculated values of the pseudorotation phase angle were between 144 and 180° in all cases. This corresponds to C′2-endo conformations of all optimised structures.

The N-glycosidic bond stability of most stable tautomers was compared to standard guanosine. Most tautomers of 8-oxo-guanosine and xanthidine are characterised by more stable C₁′-N₉ bond. This indicates that both these derivatives are hardly susceptible to spontaneous depurination and its removal from the DNA will depend mostly on the activity of DNA repair enzymes.     

Tautomeric equilibria of pyridoxal-5'-phosphate (vitamin B6) and 3-hydroxypyridine derivatives: a theoretical study of solvation effects

The tautomeric equilibria of a series of 3-hydroxypyridine derivatives including pyridoxal-5'-phosphate (PLP), the active form of vitamin B(6), have been studied using density functional calculations (B3LYP/6-311+G//B3LYP/6-31G) in the gas phase and in different solvents. Three different approaches, namely continuum, discrete, and hybrid (combined discrete/SCRF), were employed to investigate the effects of solvation on the tautomeric equilibria. In all cases, the neutral hydroxy form is significantly more stable than the zwitterionic oxo form (by 43-56 kJ mol(-)(1)) in the gas phase. The tautomeric energies reduce substantially in the presence of a polarizable dielectric medium. However, the neutral form is calculated to be the dominant form in nonpolar and aprotic polar solvents. On the other hand, a reversal of tautomeric equilibrium, in favor of the zwitterionic form, is predicted in an aqueous medium. This study highlights the role of both water molecules and bulk solvent effect in influencing the tautomeric equilibria of the PLP related compounds. A combination of explicit microsolvation and continuum reaction field is required to account fully for the energetic effect of aqueous solvation. The tautomeric free energy differences (deltaG(298)) of PLP in the gas phase and in aprotic polar (epsilon = 40) and aqueous media are predicted to be 47, 22, and -29 kJ mol(-)(1), respectively.     

Electrochemical behaviour of some polyoxo clusters

We describe the redox behaviour in non-aqueous solvents of some cyclopentadienyl(oxo)titanium derivatives. The derivative [Ti₄{η⁵-C₅H₄(SiMe₃)}₄(μ-O)₆] shows an electrochemically and chemically reversible le reduction process, followed by a multi-electron, chemically complicated reduction at a fairly cathodic potential. On the basis of the overall electrochemical features and the comparison with the redox behaviour of the quasi-planar compound [[Ti{η⁵-C₅H₄(SiMe₃)}Cl(μ-O)]₄] we propose an EECCEE mechanism for the first derivative, where the second electron-transfer induces a cascade of chemical reactions giving rise to irreversible cluster breakdown. The electrochemically induced fragmentation can be viewed as a retrosynthetic pathway. The heterometallic derivative [{Ti(η⁵-C₅H₄Me)₂(μ₂-MoO₄)₂}₂] shows two consecutive reduction processes; the first is chemically reversible, and the second quasi-reversible. The molybdate bridges apparently increase the stability of the electrogenerated anions. However none of these poly-oxo clusters can be considered as good models of electron ‘sinks’.