Three-state conical intersections in nucleic acid bases

The involvement of three-state conical intersections in the photophysics and radiationless decay processes of the nucleobases has been investigated using multireference configuration interaction methods. Three-state conical intersections have been located for the pyrimidine base, uracil, and the purine base, adenine. In uracil, a three-state degeneracy between the S(0), S(1), and S(2) states has been located at 6.2 eV above the ground-state minimum energy. This energy is 0.4 eV higher than vertical excitation to S(2) and at least 1.3 eV higher than the two-state conical intersections found previously. In adenine, two different three-state degeneracies between the S(1), S(2), and S(3) states have been located at energies close to the vertical excitation energies. The energetics of these three-state conical intersections suggest they can play a role in a radiationless decay pathway present in adenine. The existence of two different seams of three-state conical intersections indicates that these features are common and complicate the potential energy surfaces of adenine and possibly many other aromatic molecules.     

Photophysics and spectroscopy of the higher electronic states of zinc metalloporphyrins: a theoretical and experimental study

The photophysics of the S2 and S1 excited states of zinc porphyrin (ZnP) and five of its derivatives (ZnOEP, ZnTBP, ZnTPP, ZnTFPP, ZnTCl8PP) have been investigated by measuring their steady-state absorption and fluorescence spectra, quantum yields and excited state lifetimes at room temperature in several solvents. The radiative and radiationless decay constants of the fluorescent excited states accessible in the visible and near UV regions of the spectrum have been obtained. Despite the similarities in the Soret spectra of these compounds, their S2 excited state radiationless decay rates differ markedly. Although the S2-S1 electronic energies of a given zinc porphyrin vary linearly with the Lippert (refractive index) function of the solvent, the S2 radiationless decay rates of the set of compounds do not follow the energy gap law of radiationless transition theory. Calculations, using time-dependent density functional theory (TDDFT), of the energies and symmetries of the complete set of excited states accessible by 1- or 2-photon absorption in the near UV-visible have also been carried out. Substitution on the porphyrin macrocycle framework affects the ground state geometry and alters the electron density distributions, the orbital energies and the relative order of the excited electronic states accessible in the near UV-blue regions of the spectrum. The results are used to help interpret both the nature of the electronic transitions in the Soret region, and the relative magnitudes of the radiationless transition rates of the excited states involved.     

On the origin of the ultrafast internal conversion of electronically excited pyrimidine bases

The ultrafast radiationless decay of photoexcited uracil and cytosine has been investigated by ab initio quantum chemical methods based on CIS and CR-EOM-CCSD(T) electronic energy calculations at optimized CIS geometries. The calculated potential energy profiles indicate that the S(1) --> S(0) internal conversion of the pyrimidine bases occurs through a barrierless state switch from the initially excited (1)pipi state to the out-of-plane deformed excited state of biradical character, which intersects the ground state at a lower energy. This three-state nonradiative decay mechanism predicts that replacement of the C5 hydrogen by fluorine introduces an energy barrier for the initial state switch, whereas replacement of the C6 hydrogen by fluorine does not. These predictions are borne out by the very different fluorescence yields of 5-fluorinated bases relative to the corresponding 6-fluorinated bases. It is concluded from these results that the origin of the ultrafast radiationless decay is the same for the two pyrimidine bases.     

Radiative and nonradiative lifetimes in excited states of Ar,Kr and Xe atoms in a neon matrix

Synchrotron radiation with its intense continuum and its excellent time structure has been exploited for time resolved luminescence spectroscopy in the solid state. By selective excitation of n = 1, n′ = 2 exciton states of Xe, Kr and Ar atoms in a neon matrix we were able to identify the emitting states involved. Lifetimes within the cascade of radiative and radiationless relaxation between excited states as well as the radiative lifetimes for transitions to the ground state have been derived from the decay curves. Energy positions and radiative lifetimes of the emitting states correspond quite well with those of the free atoms. Radiative and radiationless relaxation processes take place within the manifold of excited states of the guest atoms. The rate constants for radiationless decay confirm an energy gap law. The order of the radiationless processes reaches in some cases extremely high values. Selection rules for spin and angular momentum are essential to understand the observed radiationless transition rates.     

Conical intersections in thymine

The mechanisms which are responsible for the radiationless deactivation of the npi* and pipi* excited singlet states of thymine have been investigated with multireference ab initio methods (the complete-active-space self-consistent-field (CASSCF) method and second-order perturbation theory with respect to the CASSCF reference (CASPT2)) as well as with the CC2 (approximated singles and doubles coupled-cluster) method. The vertical excitation energies, the equilibrium geometries of the 1npi*and 1pipi* states, as well as their adiabatic excitation energies have been determined. Three conical intersections of the S1 and S0 energy surfaces have been located. The energy profiles of the excited states and the ground state have been calculated with the CASSCF method along straight-line reaction paths leading from the ground-state equilibrium geometry to the conical intersections. All three conical intersections are characterized by strongly out-of-plane distorted geometries. The lowest-energy conical intersection (CI1) arises from a crossing of the lowest 1pipi* state with the electronic ground state. It is found to be accessible in a barrierless manner from the minimum of the 1pipi* state, providing a direct and fast pathway for the quenching of the population of the lowest optically allowed excited states of thymine. This result explains the complete diffuseness of the absorption spectrum of thymine in supersonic jets. The lowest vibronic levels of the optically nearly dark 1npi* state are predicted to lie below CI1, explaining the experimental observation of a long-lived population of dark excited states in gas-phase thymine.     

Detailed dynamics of the nonradiative deactivation of adenine: a semiclassical dynamics study

A realistic dynamics simulation study is reported for the ultrafast radiationless deactivation of 9H-adenine. The simulation follows two different excitations induced by two 80 fs (fwhm) laser pulses that are different in energy: one has a photon energy of 5.0 eV, and the other has a photon energy of 4.8 eV. The simulation shows that the excited molecule decays to the electronic ground state from the (1)pipi* state in both excitations but through two different radiationless pathways: in the 5.0 eV excitation, the decay channel involves the out-of-plane vibration of the amino group, whereas in the 4.8 eV excitation, the decay strongly associates with the deformation of the pyrimidine at the C 2 atom. The lifetime of the (1) npi* state determined in the simulation study is 630 fs for the 5.0 eV excitation and 1120 fs for the 4.8 eV excitation. These are consistent with the experimental values of 750 and 1000 fs. We conclude that the experimentally observed difference in the lifetime of the (1) npi* state at various excitations results from the different radiationless deactivation pathways of the excited molecule to the electronic ground state.     

Modeling the photophysics and photochromic potential of 1,2-dihydronaphthalene (DHN): a combined CASPT2//CASSCF-topological and MMVB-dynamical investigation

The photochemical ring opening of 1,2-dihydronaphthalene (DHN) was investigated using two complementary computational approaches. CASPT2//CASSCF minimum energy paths were characterized for reaction channels on the three lowest-energy singlet excited states, describing initial evolution of the spectroscopic bright (ionic) state and its subsequent decay to dark (covalent) states of benzene-like and hexatriene-like character. Although the benzene-like state is unreactive and can radiate, the hexatriene-like state has indirect access to a low-energy conical intersection seam, at which radiationless decay to the ground state and subsequent product formation can take place. An MMVB molecular dynamics simulation was carried out on the reactive hexatriene-like excited state, suggesting that intramolecular vibrational energy redistribution (IVR) controls the radiationless decay and the photoproduct distribution (which is qualitatively reproduced).     

A CASSCF and CASPT2 study on the excited states of s-trans-formaldazine

The low-lying excited states of s-trans-formaldazine (H2CN-NCH2) have been investigated using the complete active space self-consistent field (CASSCF) and the multiconfigurational second-order perturbation (CASPT2) methods. The vertical excitation energies have been calculated at the state-average CASSCF and multistate CASPT2 levels employing the cc-pVTZ basis set. The photodissociation mechanisms starting from the S1 state have been determined. The lowest energy points along the seams of surface intersections have been located in both the Franck-Condon region and the N-N dissociation pathway in the S1 state. Once the system populates the S1 state, in the viewpoint of energy, the radiationless decay via S1/S0(3) conical intersection followed by the N-N bond fission in the ground-state is more favorable in comparison with the N-N dissociation process in the S1 state. A three-surface crossing region (S1/T1/T2), where the S1, T1, and T2 states intersect, was also found. However, the intersystem crossing process via S1/T1/T2 is not energetically competitive with the internal conversion via S1/S0(3).     

Computational analyses of singlet-singlet and singlet-triplet transitions in mononuclear gold-capped carbon-rich conjugated complexes

Density functional theory and CASSCF calculations have been used to determine equilibrium geometries and vibrational frequencies of metal-capped one-dimensional pi-conjugated complexes (H3P)Au(C[triple chemical bond]C)(n)(Ph) (n = 1-6), (H3P)Au(C[triple chemical bond]CC6H4)(C[triple chemical bond]CPh), and H3P--Au(C[triple chemical bond]CC6H4)C[triple chemical bond]CAu--PH3 in their ground states and selected low-lying pi(pi)* excited states. Vertical excitation energies for spin-allowed singlet-singlet and spin-forbidden singlet-triplet transitions determined by the time-dependent density functional theory show good agreement with available experimental observations. Calculations indicate that the lowest energy 3(pi(pi)*) excited state is unlikely populated by the direct electronic excitation, while the low-lying singlet and triplet states, slightly higher in energy than the lowest triplet state, are easily accessible by the excitation light used in experiments. A series of radiationless transitions among related excited states yield the lowest 3(pi(pi)*) state, which has enough long lifetimes to exhibit its photochemical reactivities.     

Ultrafast transient mid IR to visible spectroscopy of fully reduced flavins

The light sensing apparatus of many organisms includes a flavoprotein. In any spectroscopic analysis of the photocycle of flavoproteins a detailed knowledge of the spectroscopy and excited state dynamics of potential intermediates is required. Here we correlate transient vibrational and electronic spectra of the two fully reduced forms of flavin adenine dinucleotide (FAD): FADH(-) and FADH(2). Ground and excited state frequencies of the characteristic carbonyl modes are observed and assigned with the aid of DFT calculations. Excited state decay and ground state recovery dynamics of the two states are reported. Excited state decay occurs on the picosecond timescale, in agreement with the low fluorescence yield, and is markedly non single exponential in FADH(-). Further, an unusual 'inverse' isotope effect is observed in the decay time of FADH(-), suggesting the involvement in the radiationless relaxation coordinate of an NH or hydrogen bond mode that strengthens in the excited electronic state. Ground state recovery also occurs on the picosecond time scale, consistent with radiationless decay by internal conversion, but is slower than the excited state decay.     

Radiationless decay in exciplexes with variable charge transfer

Rate constants for radiative decay, radiationless decay, and intersystem crossing are reported for a series of excited states formed by reaction of cyanoanthracene acceptors with alkylbenzenes as donors in several solvents of moderate to low polarity. The excited states have widely varying degrees of charge transfer, from essentially pure electron transfer states to pure locally excited states. The data illustrate the fundamental factors that control the contrasting relative efficiencies of radiative and radiationless processes in electron transfer compared to locally excited states. The radiationless decay rate constants can be described quantitatively as a function of the extent of charge transfer using weighted contributions from a locally excited decay mechanism and a pure electron-transfer type mechanism. The factors that control the rate constants for radiationless decay in excited states with intermediate charge-transfer character are discussed.     

New study of the stability and of the spectroscopy of the molecular anions NCO- and CNO-

Using highly correlated wave functions, the ground and the low lying excited states of the molecular NCO(-) and CNO(-) anions have been reinvestigated. The stability of the electronic ground state of the two isomers with respect to dissociation and to electron detachment has been checked along the isomerization pathway. The regions of stability of the excited electronic states have been analyzed and identified and it is shown that only the ground state is stable and the corresponding potential energy surface presents three equilibrium positions. The rovibronic spectroscopy of the X (1)Σ(+) state of both NCO(-) and CNO(-) isomers has been determined by a variational approach leading to remarkable agreement with experimental data.     

Assignment of electronic transitions by geometry optimization

Adiabatic excitation energies, excited state geometries, excited state charges, bond orders and dipole moments have been obtained for HCN, CO₂,H₂CO, HFCO, F₂CO, ethylene, trans-butadiene, furan, pyrrole and uracil using the SINDO1 semi-empirical method with configuration interaction. Our results generally agree with those ofab initio calculations and experiment satisfactorily. Geometry optimization is found to mix configurations differing in their allowedness in vertical excitation from the ground state, which in turn helps in the assignment of spectral transitions. TheV excited singlet state of trans-butadiene and various excited states of furan, pyrrole and uracil have been found to be appreciably non-planar. The single and double CC bonds are found to exchange positions due to the lowest triplet and singlet transitions of furan and pyrrole. The first triplet and first singlet transitions of uracil have been found to be of π-π* and π-σ* types respectively in agreement with recent experimental findings. On leave of absence from the Department of Physics, Banaras Hindu University, Varanasi-221005, India     

Effect of microhydration on the electronic structure of the chromophores of the photoactive yellow and green fluorescent proteins

Electronic structure calculations of microhydrated model chromophores (in their deprotonated anionic forms) of the photoactive yellow and green fluorescent proteins (PYP and GFP) are reported. Electron-detachment and excitation energies as well as binding energies of mono- and dihydrated isomers are computed and analyzed. Microhydration has different effects on the excited and ionized states. In lower-energy planar isomers, the interaction with one water molecule blueshifts the excitation energies by 0.1-0.2 eV, whereas the detachment energies increase by 0.4-0.8 eV. The important consequence is that microhydration by just one water molecule converts the resonance (autoionizing) excited states of the bare chromophores into bound states. In the lower-energy microhydrated clusters, interactions with water have negligible effect on the chromophore geometry; however, we also identified higher-energy dihydrated clusters of PYP in which two water molecules form hydrogen-bonding network connecting the carboxylate and phenolate moieties and the chromophore is strongly distorted resulting in a significant shift of excitation energies (up to 0.6 eV).     

On the possibility of quantum beats in the total fluorescence of large molecules

The temporal evolution of the total emission from excited electronic states of a large molecule which corresponds to the statistical limit for radiationless relaxation is considered within the two-discrete-states model. It is shown that quantum beats in total (spectrally unresolved) emission may be revealed when the excited discrete levels differ in their rate constants for radiationless relaxation even if they have equal rate constants for radiative decay.     

Energy-dependent dynamics of large-DeltaE collisions: highly vibrationally excited azulene (E=20 390 and 38 580 cm(-1)) with CO2

We report the energy dependence of strong collisions of CO(2) with highly vibrationally excited azulene for two initial energies, E=20 390 and 38 580 cm(-1). These studies show that both the distribution of transferred energy and the energy transfer rates are sensitive to the azulene energy. Highly excited azulene was prepared in separate studies by absorption of pulsed excitation at lambda=532 or 266 nm, followed by rapid radiationless decay from S(1) or S(4) to vibrationally excited levels of the ground electronic state. The appearance of scattered CO(2) (00(0)0) molecules with E(rot)>1000 cm(-1) was monitored by high-resolution transient IR absorption at lambda=4.3 mum. The average rotational and translational energies of the scattered CO(2) molecules double when the azulene energy is increased by a factor of 2. The rate of energy transfer in strong collisions increases by nearly a factor of 4 when the azulene energy is doubled. The energy transfer probability distribution function for DeltaE>3000 cm(-1) at each initial energy is an exponential decay with curvature that correlates with the energy dependence of the state density, in excellent agreement with predictions from GRETCHEN, a model based on Fermi's golden rule to describe collisional quenching of highly excited molecules.     

Theoretical investigations of the perylene electronic structure: Monomer,dimers, and excimers

The structural and electronic properties of perylene molecule, dimers, and excimers have been computationally studied. The present work represents the first systematic study of perylene molecule and dimer forms by means of long‐range corrected time‐dependent density functional theory (TDDFT) approaches. Initially, the study explores the photophysical properties of the molecular species. Vertical transitions to many excited singlet states have been computed and rationalized with different exchange‐correlation functionals. Differences between excitation energies are discussed and compared to the absorption spectrum of perylene in gas phase and diluted solution. De‐excitation energy from the relaxed geometry of the lowest excited singlet is in good agreement with the experimental fluorescence emission. Optimization of several coplanar forms of the perylene pair prove that, contrary to generalized gradient approximation (GGA) and hybrid exchange‐correlation functionals, corrected TDDFT is able to bind the perylene dimer in the ground state. Excitation energies from different dimer conformers point to dimer formation prior to photoexcitation. The fully relaxed excimer geometry belongs to the perfectly eclipsed conformation with D_2h symmetry. The excimer equilibrium intermolecular distance is shorter than the separation found for the ground state, which is an indication of stronger interchromophore interaction in the excimer state. Excimer de‐excitation energy is in rather good agreement with the excimer band of perylene in concentrated solution. The study also scans the energy profiles of the ground and lowest excited states along several geometrical distortions. The nature of the interactions responsible for the excimer stabilization is explored in terms of excitonic and charge resonance contributions. © 2015 Wiley Periodicals, Inc.     

SCF?CI and SCF open-shell studies of the base components of the nucleic acids

The π-electron structure of adenine, guanine, cytosine, thymine and uracil in their ground, ionized, singlet and triplet excited states are investigated by means of the SCF ? CI and SCF open-shell methods. The calculations for singlets fit the maxima of the absorption bands well. The energy difference between the first and the second singlet states of adenine is found to be very small. The open-shell method leads to the same relative ionization potential as does the SCF (with the integrals empirically corrected). The calculated energies of the triplet states almost coincide in the SCF open-shell and the SCF ? CI approximation. The calculated transition energies to the first triplet state of the pyrimidines are higher than in the case of the purines. The value of the singlet–triplet separation energy of purines is in agreement with experimental data.     

Electronic spectra and luminescence properties of 1,2-benzotetraphene in crystalline matrices at 77 K

Quasilinear absorption and luminescence spectra of 1,2-benzotetraphene were obtained in polycrystalline matrices at 77 K. Tne energies of successive excited singlet states as well as the energy of the lowest excited triplet state were found experimentally and compared with those calculated by the PPP CI method. The fluorescence lifetime and quantum yield were determined experimentally. Moreover, the radiationless transition probabilities, lifetime of triplet state and phosphorescence quantum yield were estimated employing the Siebrand-Williams model. The results obtained suggest that radiationless ISC processes are the main deactivation channel of the S₁ and T₁ states. The vibrational analysis of quasilinear absorption and luminescence spectra was performed and fundamental frequencies of ground and first excited singlet states were determined.     

CASSCF and CASPT2 studies on the structures, transition energies, and dipole moments of ground and excited states for azulene

The electronic structure of azulene molecule has been studied. We have obtained the optimized structures of ground and singlet excited states by using the complete active space self-consistent-field (CASSCF) method, and calculated vertical and 0-0 transition energies between the ground and excited states with second-order M?ller-Plesset perturbation theory (CASPT2). The CASPT2 calculations indicate that the bond-equalized C(2v) structure is more stable than the bond-alternating C(s) structure in the ground state. For a physical understanding of electronic structure change from C(2v) to C(s), we have performed the CASSCF calculations of Duschinsky matrix describing mixing of the b(2) vibrational mode between the ground (1A(1)) and the first excited (1B(2)) states based on the Kekule-crossing model. The CASPT2 0-0 transition energies are in fairly good agreement with experimental results within 0.1-0.3 eV. The CASSCF oscillator strengths between the ground and excited states are calculated and compared with experimental data. Furthermore, we have calculated the CASPT2 dipole moments of ground and excited states, which show good agreement with experimental values.