Mechanistic Studies of the Radical S‐Adenosylmethionine Enzyme DesII with TDP‐D‐Fucose

DesII is a radical S‐adenosylmethionine (SAM) enzyme that catalyzes the C4‐deamination of TDP‐4‐amino‐4,6‐dideoxyglucose through a C3 radical intermediate. However, if the C4 amino group is replaced with a hydroxy group (to give TDP‐quinovose), the hydroxy group at C3 is oxidized to a ketone with no C4‐dehydration. It is hypothesized that hyperconjugation between the C4 C? N/O bond and the partially filled p orbital at C3 of the radical intermediate modulates the degree to which elimination competes with dehydrogenation. To investigate this hypothesis, the reaction of DesII with the C4‐epimer of TDP‐quinovose (TDP‐fucose) was examined. The reaction primarily results in the formation of TDP‐6‐deoxygulose and likely regeneration of TDP‐fucose. The remainder of the substrate radical partitions roughly equally between C3‐dehydrogenation and C4‐dehydration. Thus, changing the stereochemistry at C4 permits a more balanced competition between elimination and dehydrogenation.     

Neutron diffraction study of unusual phase separation in the antiperovskite nitride Mn3ZnN

The antiperovskite Mn(3)ZnN is studied by neutron diffraction at temperatures between 50 and 295 K. Mn(3)ZnN crystallizes to form a cubic structure at room temperature (C1 phase). Upon cooling, another cubic structure (C2 phase) appears at around 177 K. Interestingly, the C2 phase disappears below 140 K. The maximum mass concentration of the C2 phase is approximately 85% (at 160 K). The coexistence of C1 and C2 phase in the temperature interval of 140-177 K implies that phase separation occurs. Although the C1 and C2 phases share their composition and lattice symmetry, the C2 phase has a slightly larger lattice parameter (Δa ≈ 0.53%) and a different magnetic structure. The C2 phase is further investigated by neutron diffraction under high-pressure conditions (up to 270 MPa). The results show that the unusual appearance and disappearance of the C2 phase is accompanied by magnetic ordering. Mn(3)ZnN is thus a valuable subject for study of the magneto-lattice effect and phase separation behavior because this is rarely observed in nonoxide materials.     

Conformational studies on L-serine phosphate and hydrated L-serine phosphate using ab initio SCF calculations

Ab initio MO -LCAO -SCF calculations using an STO -3G basis set were performed to find the most stable conformations of L -serine phosphate and hydrated L -serine phosphate. The most favorable conformation of L -serine phosphate is found to be one where the bond sequence O? C? C? C is trans and P? O? C? C gauche, and a very short hydrogen bond is formed between an oxygen atom of the phosphate group and a hydrogen atom of the ammonium group. For hydrated L -serine phosphate, a bridge-type hydration in which a water molecule links a phosphate oxygen and an ammonium hydrogen displays particularly low energy. In the four-hydrated L -serine phosphate anion, the most favorable conformation is such a bridged one having a rather extended configuration with regard to the bond sequences O? C? C? C and P? O? C? C.     

Hydrogen abstraction from deoxyribose by a neighbouring uracil-5-yl radical

Hydrogen abstraction from the C1' and C2' positions of deoxyadenosine by a neighbouring uracil-5-yl radical in the 5'-AU*-3' DNA sequence is explored using DFT. This hydrogen abstraction is the first step in a sequence leading to single or double strand break in DNA. The uracil-5-yl radical can be the result of photolysis or low-energy electron (LEE) attachment. If the radical is produced by photolysis the neighbouring adenine will become a cation radical and if it is produced by LEE the adenine will remain neutral. The hydrogen abstraction reactions for both cases were investigated. It is concluded that it is possible for the uracil-5-yl to abstract hydrogen from C1' and C2'. When adenine is neutral there is a preference for the C1' site and when the adenine is a radical cation the C2' site is the preferred. If adenine is positively charged, the rate-limiting step when abstracting hydrogen from C1' is the formation of an intermediate crosslink between uracil and adenine. This crosslink might be avoided in dsDNA, making C1' the preferred site for abstraction.     

C60 on SiC nanomesh

A SiC nanomesh is used as a nanotemplate to direct the epitaxy of C60 molecules. The epitaxial growth of C60 molecules on SiC nanomesh at room temperature is investigated by in situ scanning tunneling microscopy, revealing a typical Stranski-Krastanov mode (i.e., for the first one or two monolayers, it is a layer-by-layer growth or 2-D nucleation mode; at higher thicknesses, it changes to island growth or a 3-D nucleation mode). At submonolayer (0.04 and 0.2 ML) coverage, C60 molecules tend to aggregate to form single-layer C60 islands that mainly decorate terrace edges, leaving the uncovered SiC nanomesh almost free of C60 molecules. At 1 ML C60 coverage, a complete wetting layer of hexagonally close-packed C60 molecules forms on top of the SiC nanomesh. At higher coverage from 4.5 ML onward, the C60 stacking adopts a (111) oriented face-centered-cubic (fcc) structure. Strong bright and dim molecular contrasts have been observed on the first layer of C60 molecules, which are proposed to originate from electronic effects in a single-layer C60 island or the different coupling of C60 molecules to SiC nanomesh. These STM molecular contrast patterns completely disappear on the second and all the subsequent C60 layers. It is also found that the nanomesh can be fully recovered by annealing the C60/SiC nanomesh sample at 200 degrees C for 20 min.     

Artifacts in the electron paramagnetic resonance spectra of C60 fullerene ions: inevitable C120O impurity

Aspects of the electron paramagnetic resonance (EPR) spectra of C60n- fulleride ions (n = 2, 3) and the EPR signal observed in solid C60 are reinterpreted. Insufficient levels of reduction and the unrecognized presence of C120O, a ubiquitous and unavoidable impurity in air-exposed C60, have compromised most previously reported spectra of fullerides. Central narrow line width signals ("spikes") are ascribed to C120On- (n = odd). Signals arising from axial triplets (g approximately 2.0015, D = 26-29 G) in the spectrum of C602- are ascribed to C120On- (n = 2 or 4). Their D values are more realistic for C120O than C60. Less distinct signals from "powder" triplets (D approximately 11 G) are ascribed to aggregates of C120On- (n = odd) arising from freezing nonglassing solvents. In highly purified samples of C60, we find no evidence for a broad approximately 30 G signal previously assigned to a thermally accessible triplet of C60(2-). The C60(2-) ion is EPR-silent. Signals previously ascribed to a quartet state of the C60(3-) ion are ascribed to C120O4-. Uncomplicated, authentic spectra of C60- and C60(3-) become available when fully reduced samples are prepared under strictly anaerobic conditions from freshly HPLC-purified C60. Solid off-the-shelf C60 has an EPR signal (g approximately 2.0025, DeltaH(pp) approximately 1.5 G) that is commonly ascribed to the radical cation C60*+. This signal can be reproduced by exposing highly purified, EPR-silent C60 to oxygen in the dark. Doping C60 with an authentic C60*+ salt gives a signal with much greater line width (DeltaH(pp) = 6-8 G). It is suggested that the EPR signal in air-exposed samples of C60 arises from a peroxide-bridged diradical, *C60-O-O-C60* or its decomposition products rather than from C60*+. Solid-state C60 is more sensitive to oxygen than previously appreciated such that contamination with C120O is almost impossible to avoid.     

中性富勒烯分子的直接电喷雾质谱分析

电喷雾电离是新近发展的一种质谱技术, 适用于分析在溶液中呈离子状态的物质, 具有无碎片的特点。本文根据富勒烯分子的电子亲和性能, 将富勒烯混合物的甲苯溶液直接进行电喷雾质谱分析, 检出了C60, C70, C76, C80, C82, C84, C86,C88, C90, C92, C94和C96等的负离子峰。并用萘钾作还原剂,将富勒烯混合物预先还原, 制得富勒烯负离子溶液后再作电喷雾质谱分析, 得到相同的结果。表明各类富勒烯分子在电喷雾过程中俘获电子的能力与被萘钾还原的能力相一致。     

Recent Advances in Organic Electrochemical C—H Functionalization

Organic electrochemistry has a rich history in organic synthesis and has been considered as a promising alternative to traditional chemical oxidants and reductants because it obviates the use of stoichiometric amount of dangerous and toxic reagents. In particular, the electrochemical C—H bonds functionalization is one of the most desirable approaches for the construction of carbon–carbon (C—C) and carbon–heteroatom (C—X) bonds. This review summarizes the substantial progress made in the last few years in C—H functionalization via organic electrochemistry. It is divided into sections on C—C, C—N, C—O, C—S, C–Halogen and C—P bond formation.     

C77Si电子结构和光谱的量子化学研究

用INDO系列方法对C77Si的21种可能异构体进行了理论研究,表明最稳定异构体是由C78(C2v)椭球长轴所穿过的六元环上原子C35被Si取代所形成的,椭球短轴附近的原子不宜被取代;C77Si光谱吸收峰与C78相比发生红移,讨论了吸收峰红移的原因.     

生物质转化中C―O/C―C键的活化断裂

生物质作为自然界中唯一可持续的有机碳来源,在解决环境和能源问题、创建一个碳中和的社会方面展现出巨大的潜力。木质生物质是由具有C―O/C―C键的基本结构单元构成的高分子化合物,活化、断裂这些C―O/C―C键是生物质高值化利用的关键,因此在过去十年中受到了广泛的关注。本文首先简要综述了生物质转化中C―O/C―C键催化断裂的现状,主要关注C―O/C―C键断裂的关键挑战和现有策略。我们的目标不是全面概述C―O/C―C键活化断裂的现况,而是提出与C―O/C―C键断裂相关的核心问题并且对未来的研究作出展望。我们选择了碳水化合物和木质素中几种具有代表性的C―O/C―C键来讨论它们在不同情况下协同催化断裂的机理,然后对未来的研究提出自己的见解。     

External electric field effects on absorption and fluorescence spectra of a fullerene derivative and its mixture with zinc-tetraphenylporphyrin doped in a PMMA film

Electroabsorption and electrofluorescence spectra of a fullerene derivative, C60(C18)2, and its mixture with zinc-tetraphenylporphyrin (ZnTPP) have been measured by using electric field modulation spectroscopy. The change in dipole moment is significant in the electroabsorption spectra both of C60(C18)2 and of a complex composed of C60(C18)2 and ZnTPP, indicating that the excited states both of C60(C18)2 and of a complex between C60(C18)2 and ZnTPP have a large charge-transfer character. The fluorescence quantum yield of C60(C18)2 decreases in the presence of an electric field, which probably arises from the field-induced acceleration of the intramolecular nonradiative process of C60(C18)2 in the fluorescent state. In a mixture between ZnTPP and C60(C18)2, electrofluorescence spectra show the field-induced enhancement for the fluorescence of ZnTPP and the field-induced de-enhancement for the fluorescence both of C60(C18)2 and of the complex between ZnTPP and C60(C18)2. A theoretical analysis clearly shows that the field-induced enhancement of the ZnTPP fluorescence in a mixture results from the field-induced deceleration of the rate of the electron transfer from the excited ZnTPP to C60(C18)2. The standard free energy gap for the photoinduced electron-transfer process is estimated based on the theoretical simulation of the field-dependent fluorescence intensity.     

生物催化用于C—C键的立体选择性合成

C—C键的立体选择性形成是有机合成化学的重要方面. 生物催化剂的立体选择性是它们的主要优势之一, 用酶催化C—C键形成已引起了广泛关注. 总结了生物转化中C—C键形成的最新应用, 着重讨论了醛缩酶和转酮醇酶生物催化剂的应用.     

Expression of aquaporin-5 and its regulation in skeletal muscle cells

The aquaporins constitute a family of homologous intrinsic membrane proteins that function as highly selective water channels and are highly expressed in tissues where rapid water movement across the cell membrane is required. Molecular mechanism of water transport through the plasma membrane of skeletal muscle is still not clear. This study was designed to identify aquaporin subtypes and their expression regulation in C2C12 cells, a mouse myoblastic cell line. RT-PCR, immunohistochemistry and Western blot analysis revealed that C2C12 cells express AQP5. AQP5 expression was increased by induction of C2C12 differentiation. Exposure of C2C12 cells to hypertonic solutions induced an increase in AQP5 expression and p38 kinase activation. However, a p38 kinase inhibitor failed to inhibit hyperosmolar induction of AQP5 expression in C2C12 cells. These data indicate that skeletal muscle cells express AQP5 protein and its expression is regulated by differentiation and hypertonic stress.     

C~4~0, C~4~0^+, Nb@C~4~0^+, NbC~3~9^+, Nb@C~4~0H~4^+的 量子化学研究

用量子化学从头计算方法研究了C~4~0,C~4~0^+,Nb@C~4~0^+,NbC~3~9^+,Nb@C~4~0H~4^+的几何构型、电子结构和C~2~8一样,C~4~0(T~d)基态也为^5A~2态,笼骨架上具有四个悬挂键。计算结果表明C~4~0和C~4~0^+比NbC~3~9^+和Nb@C~4~0^+稳定,与实验结果一致。     

诺卜醇衍生物的合成及其13C化学位移分析

诺卜基醚;诺卜基酯;诺卜醇衍生物的合成及其13C化学位移分析     

Circular dichroism, optical rotation and absolute configuration of 2-cyclohexenone-cis-diol type phenol metabolites: redefining the role of substituents and 2-cyclohexenone conformation in electronic circular dichroism spectra

The absolute configurations of 2-cyclohexenone cis-diol metabolites resulting from the biotransformation of the corresponding phenols have been determined by comparison of their experimental and calculated circular dichroism spectra (TDDFT at the PCM/B2LYP/Aug-cc-pVTZ level), optical rotations (calculated at the PCM/B3LYP/Aug-cc-pVTZ level) and by stereochemical correlation. It is found that circular dichroism spectra and optical rotations of 2-cyclohexenone derivatives are strongly dependent on the ring conformation (M or P sofa S(5) or half-chair), enone non-planarity and the nature and positions of the hydroxy and alkyl substituents. The effect of non-planarity of the enone chromophore, including the distortion of the C=C bond, is determined for the model structures by TDDFT calculations at the PCM/B2LYP/6-311++G(2d,2p) level. Non-planarity of the C=C bond in the enone chromophore is commonly encountered in 2-cyclohexenone derivatives and it is a source of significant rotatory strength contribution to the electronic circular dichroism spectra. It is shown that the two lowest-energy transitions in acrolein and 2-cyclohexenone and its derivatives are n(C=O)-π(C=O)* and π(C=C)-π(C=O)*, as expected, while the shorter-wavelength (below 200 nm) transitions are of more complex nature. In 2-cyclohexenone and its alkyl derivatives it is predominantly a mixture of π(C=C)-π(C=C)* and π(C=C)-σ* transitions, whereas the presence of hydroxy substituent results in a dominant contribution due to the n(OH)-π(C=O)* transition. A generalized model for correlation of the CD spectra of 2-cyclohexenones with their structures is presented.     

生物质转化中C―O/C―C键的活化断裂

Sustainable fuels and chemicals are receiving unprecedented attention worldwide in the context of achieving global carbon neutrality. Biomass, as the only natural and sustainable carbon-based source, shows great potential in addressing our current environmental/energy problems and in creating a carbon-neutral society. Lignocellulosic biomass is made up of basic structural units containing C―O/C―C bonds, and the catalytic cleavage of these C―O/C―C bonds is the key for biomass valorization; thus, garnering considerable attention in the past decade. This viewpoint begins with a brief report on the current status of catalytic activation/cleavage of C―O/C―C bonds during biomass conversion, and then goes on to discuss the key challenges experienced and possible strategies that can be implemented using cooperative catalysis. Our goal is not to provide a comprehensive overview of the activation/cleavage of the C―O/C―C bonds in biomass, but rather to highlight the core questions and challenges related to this process and the requirements for future investigations. We selected several representative C―O/C―C bonds in carbohydrates and lignin to discuss their catalytic mechanism in terms of total/selective bond cleavage, and then present our own insights for future studies. Therefore, this article mainly discusses the following two aspects: (1) The activation and cleavage of C―O bonds, which includes total and selective C―O bond cleavage in furan-based fuel precursors and lignin. When aiming to produce liquid fuels, including alkanes and arenes from biomass, the total cleavage of C―O bonds is essential. During the hydrodeoxygenation (HDO) of furan-based fuel precursors, various C―O bonds need to be cleaved, especially the C―O bond of each tetrahydrofuran ring, which has the highest bond energy. When compared with the total HDO of fuel precursors, the removal of the phenolic hydroxyl groups in lignin to produce arenes is more challenging because of the competition between the over-hydrogenation of the benzene rings and the cleavage of phenolic C―O bonds. The selective or partial cleavage of C―O/C―C bonds to form highly functionalized chemicals has recently attracted great interest and is believed to be a dynamic future research avenue. For example, the production of phenol from lignin or lignin-model compounds, through the selective removal of methoxy groups and para-side-chain groups, while preserving the phenolic hydroxyl groups, has been extensively explored in the past few years. (2) The other important aspect of this article is the cleavage of the C―C bonds in carbohydrates and lignin. The cleavage of carbohydrate C―C bonds occurs via retro-aldol condensation, which produces propylene glycol, ethylene glycol, ethanol, and lactic acid. The cleavage of C―C bonds in lignin is challenging because the bond energy of the C―C bonds is generally higher than that of the C―O bonds in lignin. Therefore, in this section, we discuss the cleavage of the strongest 5―5' bond in lignin. Finally, some subjective perspectives and future directions are provided, also highlighting several major challenges in this field.      

In the first proven SN2' fullerene reaction,both C3 and C1 C60F36 hydrolyse to C1 isomers of C60F35OH that eliminate HF to give epoxides C60F34O; C60F36O oxides are shown to be ethers,and a fourth isomer of C60F36 exists

On standing in organic solvents containing traces of water, C3 and C1 isomers of C60F36 slowly convert to C1 isomers of C60F35OH. Both fluorofullerenols eliminate HF during EI mass spectrometry to give C60F34O epoxides, one fullerenol being much less stable than the other to the extent that the mass spectrum shows only the epoxide. Both C60F35OH isomers have C1 symmetry, one being identified by the remarkable linear relationship between chemical shifts in its 19F NMR spectrum and those in the spectrum of C1 C60F36; the spectrum of the other shows the pattern of C3 C60F36 rendered asymmetrical by the replacement of one F by OH. The reactions are facilitated by the presence of isolated double bonds, and provide the first proven examples of an SN2' reaction of a fullerene derivative. Our observation explains why only a limited number of fluorines are readily replaced in C60F36 and why C60F18 is by contrast much more resistant to hydrolysis. We have isolated also a pure isomer of C60F36O, which is shown to be an oxahomofullerene (ether) apparently derived from C1 C60F36, and an impure fraction comprising a fourth isomer of C60F36, a trifluoromethyl derivative of C60F36, a second isomer of C60F36O, and an unknown species of 1392 u.     

Relaxation during polymerization on slow heating and the vibrational heat capacity of the polymers

The real and imaginary components of the complex heat capacity, C(p) (') and C(p) ("), and C(p,app) have been measured in real time during the linear chain polymerization on 12 K/h heating of six different (partially) polymerized states of a stoichiometric mixture of cyclohexylamine and diglycidyl ether of bisphenol A. Their C(p,app) shows a sigmoid shape rise with different onset temperatures T(onset), which is followed by a deep exotherm as the viscosity decreases and further polymerization occurs at different rates. The rates of their enthalpy decrease on polymerization determined by subtracting C(p) (') from C(p,app) differ but C(p) (') and C(p,app) of their final states are the same. The relaxation time increases with polymerization and decreases with an increase in T. C(p) (') rises in a sigmoid shape manner, and C(p) (") shows a peak when the relaxation time of the polymerized state is equal to the inverse of the temperature modulation frequency, whether polymerization occurs or not. The unrelaxed or vibrational heat capacity C(p,vib) of the polymers at T>T(onset) is close to C(p) of their glassy state at T相似文献   

An optical thermometer based on the delayed fluorescence of C70

A sensitive and broad-ranged optical thermometer, based on the thermally activated delayed fluorescence of fullerene C70, is presented. It consists of C70 molecularly dispersed in a polymer film. Several polymer matrices were investigated. In the absence of oxygen the fluorescence intensity increases markedly with temperature. At 25 degrees C the fluorescence intensity of C70 increases maximally by a factor of between 17 and 22, depending on the polymer, whereas at 100 degrees C the fluorescence intensity can be 79 times higher. In the absence of oxygen and for temperatures above 20 degrees C, the red fluorescence of C70 in the films is so intense that it is easily perceived by the naked eye. For the systems studied, the fluorescence intensity is very sensitive to temperature. This results in a working range from -80 to at least 140 degrees C in the case of C70 in poly(tert-butyl methacrylate) (PtBMA). Perylene was incorporated into the film as an internal reference in order to enable ratiometric measurements. The sensitivity of the lifetime of the delayed fluorescence to temperature is also high and results in an even wider working range. The performance of the C70/PtBMA film was measured against a well-known optical temperature probe, [Ru(phen)3] (phen=phenanthroline). The results show that the C70/PtBMA film is a very good system for optical temperature-sensing over a wide range of temperatures, outperforming known standards.