QUATERNARY STRUCTURE OF PEA PHYTOCHROME I DIMER STUDIED WITH SMALL-ANGLE X-RAY SCATTERING and ROTARY-SHADOWING ELECTRON MICROSCOPY

Abstract— The quaternary structure of pea phytochrome type I (PI) dimer in the red-light-absorbing form was studied by small-angle X-ray scattering (SAXS) technique and rotary-shadowing electron microscopy. Structural parameters for PI 114 kDa chromopeptide dimer and its tryptically digested N-terminal 59 kDa chromopeptide monomer, such as average electron density, molecular volume and the second moment of electron density distribution, were determined in terms of SAXS using the contrast variation method. Furthermore, by means of model simulation for the scattering profiles of the chromopeptides, most plausible structural models for both peptides were constructed. The distance between the chromophoric domains was estimated to be about 70 A in the resultant model for 114 kDa chromopeptide dimer. Furthermore, the model was consistent with the electron-micrographic images of both the intact PI dimer and the PI 114 kDa chromopeptide dimer, so that the N-terminal 7 kDa fragment did not significantly contribute the low-resolution images of the dimer.     

One-dimensional arrays of nanoshell dimers for single molecule spectroscopy via surface-enhanced Raman scattering

The optical properties of one-dimensional arrays of metal nanoshell dimers are studied systematically using the T-matrix method based on Mie theory, within the context of surface enhanced Raman scattering (SERS). It is shown that the local electromagnetic enhancement can be as high as approximately 4.5 x 10(13) for nanoshell dimer arrays with optimal geometry, and sensitive tunability in the resonant frequency can be gained by varying the geometrical parameters, making such structures appealing templates for SERS measurements with single molecule sensitivity. The extraordinarily high enhancement is attributed to a collective photonic effect constructively superposed onto the intrinsic enhancement associated with an isolated nanoshell dimer.     

Hyper-Raman scattering enhanced by anisotropic dimer plasmons on artificial nanostructures

Silver nanodimers with a small gap of a few nanometers aligned on glass substrates were used to enhance hyper-Raman scattering of crystal violet dye molecules. When localized surface plasmon of the dimer array was resonantly excited along the interparticle axis, hyper-Raman intensity was significantly enhanced. Moreover, the spectral appearance was slightly different between the two excitation polarizations, suggesting a possibility of two resonance contributions at one-photon and two-photon energies. Since the plasmonic property of dimer arrays can be controlled by the dimer geometry, the dimer arrays are expected to be well-defined substrates for surface-enhanced hyper-Raman spectroscopy.     

Polarization characteristics of surface-enhanced Raman scattering from a small number of molecules at the gap of a metal nano-dimer

Polarized SERS was measured at the substrate with an Ag nano-dimer array immersed in 4,4'-bipyridine solution. The orientation of the molecule at the gap of the dimer changed the polarization of the scattering photons.     

Multiple States of Dimeric Aggregates Formed by (Amido–ethynyl)helicene Bidomain Compound and (Amido–ethynyl–amido)helicene Tridomain Compound

An (amido–ethynyl)helicene bidomain compound and an (amido–ethynyl–amido)helicene tridomain compound were synthesized. The multidomain compounds were designed on the basis of previous findings that amido and ethynyl oligomers form dimeric aggregates with properties orthogonal to each other. Four aggregate states of multidomain compounds, namely, all‐dimer, amido‐dimer, ethynyl‐dimer, and random‐coil states, were obtained in different solvents, which were analyzed by circular dichroism (CD), UV/Vis, ¹H NMR, and IR spectroscopy; vapor pressure osmometry (VPO); dynamic light scattering (DLS); and atomic force microscopy (AFM). The amido and ethynyl domains independently aggregated and disaggregated in a two‐state manner. Reversible structural changes occurred for a tridomain compound between the ethynyl‐dimer/random‐coil state and the all‐dimer/amido‐dimer state with heating and cooling. Two structural change processes with different properties were obtained using a single compound.     

Optical dephasing in a glass-like system: a photon echo study of pentacene in benzoic acid

Optical absorption and picosecond photon echo experiments are used to study the dephasing of pentacene in benzoic acid. It is shown that, while the absorption spectrum of pentacene is effected by proton transfer in the benzoic acid dimer, the dephasing is caused by elastic and inelastic phonon scattering processes.     

Temperature-dependent dephasing of delocalized dimer states of pentacene in p-terphenyl: picosecond photon echo experiments

Optical dephasing of pentacene dimers in p-terphenyl is studied. Dimer statesR₃ and R₄ exhibit an exponential temperature activation of T′₂ which is inconsistent with a mechanism involving scattering between delocalized dimer states. Other dephasing mechanisms are discussed. An upper limit is placed on the relaxation rate from the upper dimer state, R₁, to R₃     

Spin exchange interactions and magnetic structures of extended magnetic solids with localized spins: theoretical descriptions on formal, quantitative and qualitative levels

Low-energy excitation energies of a magnetic solid with localized spins are probed by magnetic susceptibility, neutron scattering and Raman scattering measurements, and are analyzed using a spin Hamiltonian with a set of spin exchange parameters. The nature and values of the spin exchange parameters deduced from this analysis depend on what spin exchange paths one includes in the spin Hamiltonian. In this article, we review how spin exchange interactions of magnetic solids with localized spins are described on formal, quantitative and qualitative theoretical levels, investigate antisymmetric and anisotropic interactions for general spin dimers, and discuss the spin exchange interactions and magnetic structures of various extended magnetic solids on the basis of spin dimer analysis. Strongly interacting spin exchange paths of a magnetic solid are determined by the overlap between its magnetic orbitals, so that the strongly interacting spin unit of a magnetic solid does not necessarily have the same geometrical feature as does the arrangement of its magnetic ions or spin-carrying molecules. Therefore, in interpreting results of magnetic susceptibility, inelastic neutron scattering or Raman scattering measurements, it is essential to employ a set of spin exchange parameters chosen on the basis of proper electronic structure considerations. Spin dimer analyses based on extended Hückel tight binding calculations provide a reliable and expedient means to study the relative strengths of superexchange and super-superexchange spin exchange interactions.     

Interaction of morin with CTMAB: aggregation and location in micellar.

The aggregation and location of morin in CTMAB micellar solution was studied by light scattering spectra, electronic absorption spectra and pulsed FT NMR techniques. The difference in the light scattering property of morin with and without CTMAB proved that a large particle of the morin-CTMAB associate formed. Morin has a self-assembly tendency, but the assembly number is not high. With the increase of morin concentration, morin changed from a monomer to dimer. The hyperchromic and bathochromic effect of morin, with the increase in pH value or     

Structural analysis of the reconstructed Si(001)-C surface

The atomic structure of reconstructed Si(001)c(4 x 4)-C surface has been studied by coaxial impact collision ion scattering spectroscopy. When the 100L of ethylene (C(2)H(4)) molecules have been exposed on Si(001)-(2 x 1) surface at 700 degrees C, it is found that C atoms cause the ordering of missing Si dimer defects and occupy the fourth layer of Si(001) directly below the bridge site. Our results provide the support for the previous model in which a missing dimer structure is accompanied by C incorporation into the subsurface.     

Early stages of formation of branched host-guest supramolecular polymers

A structural characterization of host-guest supramolecular copolymers, formed by an adamantane dimer and two beta-cyclodextrin trimers in aqueous solution, has been carried out by combining small angle X-ray scattering and light scattering experiments. A shape-reconstruction method was applied to the SAXS data to obtain relatively high-resolution conformation information, and a correlation with the experimental dynamic light scattering results was performed, by estimating the hydrodynamic radii of the reconstructed shape through a shell model method. When applied on the solutions of the trimers, the analysis provides a globular reconstructed shape with a hydrodynamic radius in agreement with the experimental one. For the polymers, elongated structures were inferred which grow both in length and in cross section by increasing the concentration. Depending on the beta-cyclodextrin trimer employed in the polymer preparation, polymerization degrees ranging between roughly 7 and 14 or 9 and 22 were obtained in the concentration range 4.00-10.0 or 3.10-6.60 mM of the trimer (6.00-15.0 or 4.65-9.90 mM of the dimer). Aggregation schemes were proposed accounting for the formation of hyperbranched, linear, and network like polymers. The experimental results are not far from those expected on the basis of the aggregation in hyperbranched structure, for which the growth of elongated aggregates can be predicted in the early stages of the polymerization. However, the coexistence of the other structures, in particular of the linear one, cannot be ruled out.     

Four-wave mixing spectroscopy of molecular dimers. Application to dimers of pentacene in p-terphenyl

Dispersive coherent Stokes-Raman scattering (CSRS) experiments on pentacene dimers in p-terphenyl were performed to locate the corresponding singly excited, delocalized, dimer levels. In addition the CNRS technique was used to locate the doubly excited dimer state. Future experiments exploring the dynamics of this novel state are discussed.     

A hydrogen-sensitive analysis of the structure of deuterated liquid formamide

Structural investigations of deuterated liquid formamide were performed by using neutron scattering, ab-initio calculations and classical Molecular Dynamics (MD) simulations. The recorded neutron data are analysed to yield the total structure factor S_M (Q), the molecular form factor F (Q), the distinct pair correlation function g_L(r) and particularly the deuterium-oxygen signature of H-bond interactions. Neutron scattering data, as well as recent x-ray studies, clearly show that the local order of the liquid is largely described by one dimer, two trimers and one tetramer. Molecular Dynamics simulations show that neutron scattering data can be reproduced by three different force fields.     

Switchable supramolecular polymers from the self-assembly of a small monomer with two orthogonal binding interactions

The low molecular weight heteroditopic monomer 1 forms supramolecular polymers in polar solution as shown, for example, by infrared laser-based dynamic light scattering (DLS), small-angle neutron scattering (SANS), electron microscopy (TEM, cryo-TEM), and viscosity measurements. Self-assembly of 1 is based on two orthogonal binding interactions, the formation of a Fe(II)-terpyridine 1:2 metal-ligand complex and the dimerization of a self-complementary guanidiniocarbonyl pyrrole carboxylate zwitterion. Both binding interactions have a sufficient stability in polar (DMSO) and even aqueous solutions to ensure formation of linear polymers of considerable length (up to 100 nm). The supramolecular polymerization follows a ring-chain mechanism causing a significant increase in the viscosity of the solutions at millimolar concentrations and above. The linear polymers then further aggregate in solution into larger globular aggregates with a densely packed core and a loose shell. Both binding interactions can be furthermore switched on and off either by adding a competing ligand to remove the metal ion and subsequent readdition of Fe(II) or by reversible protonation and deprotonation of the zwitterion upon addition of acid or base. The self-assembly of 1 can therefore be switched back and forth between four different states, the monomer, a metal-complexed dimer or an ion paired dimer, and finally the polymer.     

Understanding the formation and evolution of ceria nanoparticles under hydrothermal conditions

Supercritical growth: The formation and evolution of ceria nanoparticles during hydrothermal synthesis was investigated by in?situ total scattering and powder diffraction. The nucleation of pristine crystalline ceria nanoparticles originated from previously unknown cerium dimer complexes. The nanoparticle growth was highly accelerated under supercritical conditions.     

The defect structure of anion excess CaF2

Neutron scattering and computer simulation techniques have been used to investigate the defect cluster structure of CaF₂ doped with 5% La^3?. The results strongly support the formation of small discrete clusters rather than the superstructures that have been suggested in recent studies of anion excess fluorites. The type of cluster that emerges as dominant comprises an interstitial-dopant dimer (of the 2:2:2 type) which has captured an additional F^? interstitial. The formation of such clusters is supported by recent ITC studies.     

Supramolecular polymers based on the quadruplex formation of ditopic guanosine macromonomers in nonaqueous media

The formation of supramolecular polymeric aggregates with a molecular mass of 100 kDa in a nonaqueous solution from a telechelic dimer of isopropylidene guanosine in the presence of K(+) ions is reported. The possible structure of macromonomers resulting from the development of G4 quartets was deduced from DOSY NMR, circular dichroism spectra, and dynamic light scattering measurements.     

Electrostatically driven protein aggregation: beta-lactoglobulin at low ionic strength

The aggregation of beta-lactoglobulin (BLG) at ambient temperature was studied using turbidimetry and dynamic light scattering in the range 3.8相似文献   

Continuous-Wave Raman Lasing from Metal-Linked Organic Dimer Microcrystals

Stimulated Raman scattering offers an alternative strategy to explore continuous-wave (c.w.) organic lasers, which, however, still suffers from the limitation of inadequate Raman gain in organic material systems. Here we propose a metal-linking approach to enhance the Raman gain of organic molecules. Self-assembled microcrystals of the metal linked organic dimers exhibit large Raman gain, therefore allowing for c.w. Raman lasing. Furthermore, broadband tunable Raman lasing is achieved in the organic dimer microcrystals by adjusting excitation wavelengths. This work advances the understanding of Raman gain in organic molecules, paving a way for the design of c.w. organic lasers.     

Electro-oxidation of o-aminophenol studied by cyclic voltammetry and surface enhanced Raman scattering (SERS)

Cyclic voltammetry and surface enhanced Raman scattering (SERS) spectra were used over a wide pH range to examine the products of o-aminophenol oxidation on a roughened silver electrode. The results of the study indicated that at least two oxidation products are formed at the stationary potential of the electrode. The major product in alkaline and neutral media was identified as 2,2′-dihydroxyazobenzene, a linear dimer formed by N---N coupling of o-aminophenol cation radicals. In acidic solutions the cyclic dimer 3-aminophenoxazone formed by C---N coupling of o-aminophenol cation radicals dominates on the silver electrode.