Electronic circular dichroism of disulphide bridge: ab initio quantum-chemical calculations

Electronic circular dichroism (ECD) parameters of the disulphide chromophore have been calculated for dihydrogen disulphide, dimethyl disulphide, and cystine using density-functional theory, coupled-cluster theory, and multiconfigurational self-consistent field theory. The objective is twofold: first, to examine the performance of the Coulomb-attenuated CAM-B3LYP functional for the calculation of ECD spectra; second, to investigate the dependence of the ECD parameters on the conformation around the disulphide bridge. The CAM-B3LYP functional improves considerably on the B3LYP functional, giving results comparable to CCSD theory and to MCSCF theory in an extended active space. The conformational dependence of the ECD parameters does not change much upon substitution, which is promising for the application of ECD in structural investigations of proteins containing disulphide bridges.     

Photoelectron spectroscopy and ab initio LCAO MO SCF calculations on thiazyl fluoride

The He l, He II and Ne I photoelectron (p.e.) spectra of thiazyl fluoride. NSF, are compared with ab initio LCAO MO SCF calculations via Koopmans' theorem. The calculations predict the valence formulation NSF, and the p.e. spectrum is consistent with this. Comparisons are drawn with the isoelectronic molecule SO₂     

FTIR, Raman spectra and ab initio calculations of 2-mercaptobenzothiazole

FTIR and Raman spectra of a rubber vulcanization accelerator, 2-mercaptobenzothiazole (MBT), were recorded in the solid phase. The harmonic vibrational wavenumbers, for both the toutomeric forms of MBT, as well as for its dimeric complex, have been calculated, using ab initio RHF and density functional B3LYP methods invoking different basis sets upto RHF/6-31G** and B3LYP/6-31G** and the results were compared with the experimental values. Conformational studies have been also carried out regarding its toutomeric monomer forms and its dimer form. With all the basis sets the thione form of MBT (II) is predicted to be more stable than thiol form (I) and dimeric conformation (III) is predicted to be more stable with monomeric conformations (I) and (II). Vibrational assignments have been made, and it has been found that the calculated normal mode frequencies of dimeric conformation (III) are required for the analysis of IR and Raman bands of the MBT. The predicted shift in NH- stretching vibration towards the lower wave number side with the B3LYP/6-31G** calculations for the most stable dimer form (III), is in better agreement with experimental results. The intermolecular sulfur-nitrogen distance in N-H...S hydrogen bond was found to be 3.35 angstroms from these calculations, is also in agreement to the experimental value.     

Propionaldehyde: ab initio and semi-empirical calculations

The internal rotation of propionaldehyde about the 1–2 bond has been studied by means of ab initio calculations. The most stable conformer has methyl and carbonyl eclipsed. Increasing the 1–2 dihedral angle to 60°, 120°, and 180° gives energies of 1.7, 0.4, and 0.7 Kcal/mol, respectively. The agreement with force field calculations and with experiment is reasonable.     

Photoelectron spectra andab initio calculations of the electronic structure of amino-n-sulfenyl chlorides

The electronic structure of some amino-N-sulfenyl chlorides and related compounds is studied by photoelectron spectroscopy and ab initio calculations. Similar values of IP(n _S ) and IP(n _N ) and the total energy minimum indicate that in stable conformations the n _S and n _N orbitals are orthogonal. These conformers are characterized by an effective n_N-σ _S-Cl ^* interaction. The relationship between the intramolecular shift of charge and ionization potential values and the spatial structure of amino-N-sulfenyl chlorides is analyzed. A. E. Arbuzov Institute of Organic and Physical Chemistry, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 35, No. 2, pp. 69–73, March–April, 1994. Translated by L. Smolina     

G2 ab initio calculations on three-membered rings: Role of hydrogen atoms

G2 ab initio calculations on all ABX three-membered rings (TMRs) that can be derived from cyclopropane by systematic substitution of the (SINGLE BOND)CH₂ groups by (SINGLE BOND)NH or (SINGLE BOND)O groups have been performed. Our results show that the decrease in the A(SINGLE BOND)B bond length as the electronegativity of X increases is significantly larger than that found for the corresponding acyclic analogs. In general, a systematic substitution of the (SINGLE BOND)CH₂ groups of cyclopropane by (SINGLE BOND)NH or (SINGLE BOND)O groups implies significant geometric changes that are not reflected in a parallel change of the corresponding conventional ring strain energy (CRSE). When the electronegativity of the groups forming the TMR increases the effect on the CRSE of the system is small, although the charge delocalization inside the ring decreases. The near constancy of the CRSE along the series can be explained in terms of the charge redistribution of the system where the (SINGLE BOND)CH₂ groups play a crucial role. There are, however, significant changes in the hydrogenation energies of the TMR investigated; our results show that, when in an ABX three-membered ring, the electronegativity of X increases the hydrogenation energy of A(SINGLE BOND)B bond decreases and vice versa. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 1072–1086, 1998     

Infrared spectra,vibrational assignment and ab initio calculations for 2,2,2-trifluoroethanimidamide

The infrared spectra of gaseous and solid 2,2,2-trifluoroethanimidamide, CF₃(NH₂)C=NH, have been recorded from 4000 to 80 cm^–1. A vibrational assignment for the normal modes is proposed based on group frequencies and normal coordinate calculations utilizing C₁ symmetry. The structures for both the cis [hydrogen atom of the =NH group is cis to the NH₂ group] and trans geometric isomers have been determined from ab initio Hartree-Fock gradient calculations employing the GAUSSIAN-82 program with the 3–21G basis set. The most stable conformer at this level of calculation is found to be a C₁, structure with a partially rotated CF₃ group and the hydrogen atom of the imine group trans to the NH₂ group. The calculated structural parameters have only very small differences between the conformers. Barriers to internal rotation for the NH₂ and CF₃ groups and vibrational frequencies have been calculated for the C₁ form. The results of this investigation are compared with similar data on some corresponding molecules.Taken in part from the thesis of T. G. Sheehan which was submitted to the Department of Chemistry in partial fulfillment of the Ph.D. degree, May 1990.     

Matrix-isolation study and ab initio calculations of the structure and spectra of hydroxyacetone

The structure of hydroxyacetone (HA) isolated in an argon matrix (at 12 K) and in a neat solid phase (at 12-175 K) was characterized by using infrared (IR) spectroscopy. The interpretation of the experimental results was supported by high-level quantum chemical calculations, undertaken by using both ab initio (MP2) and density functional theory methods. A potential-energy surface scan, carried out at the MP2/6-311++G(d,p) level of theory, predicted four nonequivalent minima, Cc, Tt, Tg, and Ct, all of them doubly degenerate by symmetry. The energy barriers for conversion between most of the symmetrically related structures and also between some of the nonequivalent minima (e.g., Tg --> Tt and Ct --> Tt) are very small and stay below the zero-point vibrational level associated with the isomerization coordinate in the higher-energy form in each pair. Therefore, only Cc and Tt conformers have physical significance, with populations of 99 and 1%, respectively, in gas phase at room temperature. For the matrix-isolated compound, only the most stable Cc conformer was observed. On the other hand, the polarizable continuum model calculations indicated that in water solution, the population of Tt and Ct conformers might be high enough (ca. 6 and 11%, respectively) to enable their experimental detection, thus supporting the conclusions of a previous IR spectroscopy study [ Spectrochim. Acta A 2005, 61, 477] in which the presence of more than one HA conformer in aqueous solution was postulated. The signatures of these minor conformers, however, do not appear in the spectra of the neat HA crystal, and the crystal structure was rationalized in terms of centrosymmetric hydrogen-bonded dimers consisting of two Cc-like units. Finally, we calculated (1)H, (13)C, and (17)O NMR chemical shifts at different levels of theory and found them to agree with available experimental data.     

FT-Raman and FTIR spectra, assignments and ab initio calculations of 2-aminobenzyl alcohol

The Fourier transform Raman and Fourier transform infrared spectra of 2-aminobenzyl alcohol (2ABA) were recorded in the solid phase. Geometry optimizations were done with out any constraint and harmonic vibrational wave numbers and several thermodynamic parameters were calculated for the minimum energy conformer at ab initio and DFT levels invoking 6-31g** and 6-311+g(2d, p) basis sets and the results were compared with the experimental values. With the help of three specific scaling procedures, the observed vibrational wavenumbers in FTIR and FT-Raman spectra were analyzed and assigned to different normal modes of the molecule. Most of the modes have wavenumbers in the expected range and the error obtained was in general very low. The appropriate theoretical spectrograms for the Raman and IR spectra of 2ABA were also constructed.     

Vibrational spectra,conformational equilibria,ab initio calculations and vibrational assignments of ethylmethylfluorosilane

The infrared spectra of ethylmethylfluorosilane (CH₃SiHFCH₂CH₃) have been recorded as a vapour, liquid and solid at 78 K in the 4000–50 cm⁻¹ range and isolated in an argon matrix at ca. 5 K. Infrared spectra of two different solid phases were obtained after annealing to temperatures of 120 and 130 K, and recooling to 78 K. Although the IR spectra were quite similar in the MIR region, certain differences were noted in the FIR region below 400 cm⁻¹. The most stable conformer MeMe was present after annealing to 130 K, but three bands belonging to MeH were detected after annealing to 120 K. Various infrared bands changed intensity when the argon matrix was annealed to temperatures between 20 and 35 K, and some of these were related to changes in the conformational abundance.Raman spectra of the liquid were recorded at room temperature and at various temperatures between 295 and 153 K. Spectra of an amorphous and annealed solid were recorded at 78 K. In the variable temperature Raman spectra, various bands changed in intensity and were interpreted in terms of conformational equilibria between the three possible conformers. Complete assignments were made for all the bands of the most stable conformer MeMe. From various bands assigned to the three conformers, the conformational enthalpy difference ΔH from MeMe to the intermediate energy conformer MeH was found to be 0.5 kJ mol⁻¹ and to the highest conformer MeF was 0.7 kJ mol⁻¹. At ambient temperature this leads to 39% MeMe, 32% MeH and 29% of the MeF conformer in the liquid.Ab initio calculations in the RHF, MP2, DFT approximations and very accurate G2 calculations were carried out. With one exception, the MeMe conformer had the lowest enthalpy in all these calculations, the MeH had the intermediate and the MeF the highest enthalpy, and the calculations were in good agreement with the measurements.     

Vibrational spectra of methyllithium and its aggregates: a new interpretation from ab initio anharmonic calculations

The complete quartic force field of methyllithium (CH₃Li) is computed at the B3LYP/cc-pVTZ level of theory. The vibrational energy levels calculated from a perturbational and a variational procedure are in agreement with the observed spectra except for the C–Li stretching and the symmetric methyl deformation modes for which a disagreement with the experimental assignment given by Andrews is apparent. This discrepancy between experiment and theory is so large that questions are raised either about a correct characterization of, or correct calculations for the monomeric species CH₃Li. Our theoretical study of methyllithium aggregates (CH₃Li)_n, with n = 2, 3, 4 and 6, gives a new interpretation of the experimental data.     

Prediction of hydrogen hydrate equilibrium by integrating ab initio calculations with statistical thermodynamics

This paper addresses a new calculation approach for the prediction of hydrogen hydrate equilibrium by introducing the concept of a single hydrogen cluster in one cavity. By integrating ab initio calculations with classical statistical thermodynamics, this approach enables the van der Waals model to predict the dissociation pressure of hydrogen hydrates. Compared to hydrates formed by light hydrocarbon gases, structure II (sII) hydrogen hydrates stably encage two and four hydrogen molecules in the small and large cavities, respectively. By treating two hydrogen molecules or four hydrogen molecules as one rigid body cluster, we determine ab initio binding energies between water molecules and hydrogen clusters at the MP2 level with the 6-31++G(2d,2p) basis set. These binding energies will be used to determine the parameters of the Exp-6 potential function from which the smooth cell potential and the Langmuir constant of each cluster are calculated. Then, the dissociation pressure is determined using the Zele-Lee-Holder cell distortion model: 105, 625, and 2000 bar at 150, 200, and 250 K, respectively.     

Vibrational spectra, ab initio calculations, and ring-puckering potential energy function for gamma-crotonolactone

The infrared and Raman spectra of liquid and vapor gamma-crotonolactone have been collected. Both the experimental data and ab initio calculations show that the molecule is rigidly planar in its electronic ground state. This conclusion agrees with the previously reported microwave studies and is attributed to the conjugation between the C=C and C=O double bonds of the ring. The ring-puckering potential energy function was generated from ab initio calculations and was confirmed by the vapor-phase Raman spectra to be nearly harmonic. Density functional theory (DFT) calculations predict a harmonic ring-puckering frequency of 203 cm(-1) as compared to the observed vapor-phase Raman value of 208 cm(-1). The DFT calculations were also used to compute the infrared and Raman spectra of gamma-crotonolactone, and these agree very well with the experimental spectra.     

The current state of ab initio calculations of optical rotation and electronic circular dichroism spectra

The current ability of ab initio models to compute chiroptical properties such as optical rotatory dispersion and electronic circular dichroism spectra is reviewed. Comparison between coupled cluster linear response theory and experimental data (both gas and liquid phase) yields encouraging results for small to medium-sized chiral molecules including rigid species such as (S)-2-chloropropionitrile and (P)-[4]triangulane, as well as conformationally flexible molecules such as (R)-epichlorohydrin. More problematic comparisons are offered by (S)-methyloxirane, (S)-methylthiirane, and (1S,4S)-norbornenone, for which the comparison between theory and experiment is much poorer. The impact of basis-set incompleteness, electron correlation, zero-point vibration, and temperature are discussed. In addition, future prospects and obstacles for the development of efficient and reliable quantum chemical models of optical activity are discussed, including the problem of gauge invariance, scaling of the coupled cluster approach with system size, and solvation.     

Study of the Xe-NH3 van der Waals complex: high-resolution microwave spectra and ab initio calculations

An ab initio potential energy surface of the Xe-NH(3) van der Waals complex was constructed at the coupled cluster level of theory with single, double, and pertubatively included triple excitations. The small-core pseudopotential and augmented correlation-consistent polarized valence quadruple-zeta basis set was used for the Xe atom and Dunning's augmented correlation-consistent polarized valence triple-zeta basis set for the other atoms. The basis sets were supplemented with midbond functions. Rotational spectra of the Xe-NH(3) van der Waals complex were recorded using a pulsed-nozzle Fourier transform microwave spectrometer. Rotational transitions within two internal rotor states, namely, the Sigma0(0) and Pi1(1) (lower) states, were measured and assigned to the Xe-(14)NH(3) and Xe-(15)NH(3) isotopologues. For the deuterated isotopologues, only the Sigma0(0) states were observed. Two inversion components were observed for each state except for the "s" component of the Sigma0(0) state of the Xe-(14)NH(3) and Xe-(15)NH(3) isotopologues, which has a spin statistical weight of zero. Nuclear quadrupole hyperfine structures arising from the (14)N (nuclear spin angular momentum quantum number I=1) and (131)Xe (I=32) nuclei were detected and analyzed. The observed spectra suggest that the Pi1(1) (lower) state has lower energy than the unobserved Sigma1(1) state, in contrast to the case of Ar-NH(3).     

Lithium cluster anions: photoelectron spectroscopy and ab initio calculations

Structural and energetic properties of small, deceptively simple anionic clusters of lithium, Li(n)(-), n = 3-7, were determined using a combination of anion photoelectron spectroscopy and ab initio calculations. The most stable isomers of each of these anions, the ones most likely to contribute to the photoelectron spectra, were found using the gradient embedded genetic algorithm program. Subsequently, state-of-the-art ab initio techniques, including time-dependent density functional theory, coupled cluster, and multireference configurational interactions methods, were employed to interpret the experimental spectra.     

Vibrational spectra and conformations of 1,4-cyclohexadiene and its oxygen analogues: ab initio and density functional calculations

The vibrational spectra and ring-puckering potential energy functions of 1,4-cyclohexadiene, 4H-pyran and 1,4-dioxin have been examined using a density functional theory (DFT) method as well as the Hartree–Fock (HF) and second-order Møller–Plesset (MP2) methods. The calculated vibrational frequencies and potential energy functions of those molecules have been compared with previously reported experimental data and MM3 results. For all three molecules, the DFT method using Becke's three-parameter functional (B3LYP) has led to the prediction of more accurate vibrational frequencies than the HF and MP2 methods. The enlargement of the basis set at the B3LYP levels has improved the accuracy of calculated vibrational frequencies. In particular, the C–O–C=C torsional force field parameters obtained from the B3LYP method have correctly predicted the ring-puckering potential energy functions of the oxygen-containing analogues, 4H-pyran and 1,4-dioxin, which could not be done by the MM3 method.     

Molecular structure and vibrational spectra of phenobaraitone by density functional theory and ab initio hartree-Fock calculations

Quantum chemistry calculations have been performed using Gaussian03 program to compute optimized geometry, harmonic vibrational frequency along with intensities in IR and Raman spectra at RHF/6-31++G** and B3LYP/6-31++G** levels for phenobarbitone (C₁₂H₁₂N₂O₃) in the ground state. The scaled harmonic vibrational frequencies have been compared with experimental FT-IR and FT-Raman spectra. Theoretical vibrational spectra of the title compound were interpreted by means of potential energy distributions (PEDs) using MOLVIB program. A detailed interpretation of the infrared spectra of the title compound is reported. On the basis of the agreement between the calculated and observed results, the assignments of fundamental vibrational modes of phenobarbitone were examined and some assignments were proposed. The theoretical spectrograms for FT-IR and FT-Raman spectra of the title compound have been constructed.