Electrochemical genosensing of Salmonella, Listeria and Escherichia coli on silica magnetic particles

A magneto-genosensing approach for the detection of the three most common pathogenic bacteria in food safety, such as Salmonella, Listeria and Escherichia coli is presented. The methodology is based on the detection of the tagged amplified DNA obtained by single-tagging PCR with a set of specific primers for each pathogen, followed by electrochemical magneto-genosensing on silica magnetic particles. A set of primers were selected for the amplification of the invA (278 bp), prfA (217 bp) and eaeA (151 bp) being one of the primers for each set tagged with fluorescein, biotin and digoxigenin coding for Salmonella enterica, Listeria monocytogenes and E. coli, respectively. The single-tagged amplicons were then immobilized on silica MPs based on the nucleic acid-binding properties of silica particles in the presence of the chaotropic agent as guanidinium thiocyanate. The assessment of the silica MPs as a platform for electrochemical magneto-genosensing is described, including the main parameters to selectively attach longer dsDNA fragments instead of shorter ssDNA primers based on their negative charge density of the sugar-phosphate backbone. This approach resulted to be a promising detection tool with sensing features of rapidity and sensitivity very suitable to be implemented on DNA biosensors and microfluidic platforms.     

Synthesis of homologously pure bacteriochlorophyll-e and f analogues from BChls-c/d via transformation of the 7-methyl to formyl group and self-aggregation of synthetic zinc methyl bacteriopheophorbides-c/d/e/f in non-polar organic solvent

Homologously pure methyl bacteriopheophorbides-e and f (BPhes-e/f_M) were prepared from modification of naturally occurring bacteriochlorophylls-c and d (BChls-c/d), respectively, by transformation of the methyl to formyl group at the 7-position. The absolute configuration of the 1-hydroxyethyl group at the 3-position of (Zn-)BPhes-e/f_M was determined from comparison with structurally known BChl-c/d epimers. Visible spectra of synthetic (Zn-)BPhe-c/d/e/f_M showed that the 7¹-oxidation and the 8²/12¹/20-methylation affected Soret, Q_x and Q_y bands of both the monomeric (in a polar organic solvent) and oligomeric species (in a non-polar solvent).     

The enolate anions of chlorophylls a and b as ambident nucleophiles in oxidations with (−)- or (+)-(10-camphorsulfonyl)oxaziridine. Synthesis of 13(S/R)-hydroxychlorophylls a and b

The enolate anions of chlorophylls (Chl) are ambident nucleophiles that are of considerable organic chemical interest in relation to the theory of electron delocalization (aromaticity) and charge-transfer in large conjugated π-systems, as well as for their chemical reactivity. Under deaerated conditions, the (−)- and (+)-enantiomers of (10-camphorsulfonyl)oxaziridine (CSOAI) are effective oxidants for the enolate anions of Chl a and Chl b, when 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU) serves as a base. In this study, the use of these sterically hindered reagents to hydroxylate Chl a and Chl b is described for the first time. The total yield of 13²(S/R)-HO-Chl a was 71 and 90% for the oxidations of Chl a with (−)-CSOAI and (+)-CSOAI, respectively. Chl b, however, behaved clearly differently from Chl a. The total yield of 13²(S/R)-HO-Chl b was 40% in the oxidation with (−)-CSOAI and 60% in the reaction with (+)-CSOAI. A competing side-reaction, which resulted in the 15²-methyl, 17³-phytyl ester of Mg-15¹(S/R)-unstable rhodin, was found to lower the yields of the desired main products. The formation of the side-products was largely avoided and the yield of 13²(S/R)-HO-Chl b was improved by increasing the volume of hexane and using phosphate buffer in the first step of the work-up. With (−)-CSOAI, a 94% diastereomeric excess (de) was achieved for 13²(R)-HO-Chl a, whereas the de for 13²(R)-HO-Chl b was 66%. With (+)-CSOAI, the de was 10% for 13²(R)-HO-Chl a and 8% for 13²(R)-HO-Chl b. The results were interpreted in terms of a nucleophilic reaction mechanism, kinetically controlled by steric hindrance, originating on the one hand in the 17-propionate phytyl ester side-chain, protruding over the isocyclic ring E of the Chl enolate ion, and on the other hand in the bulky camphorsulfonyl unit of CSOAI. Possible reasons for the different results from the Chl b oxidations as compared with those of the Chl a oxidations are discussed. Comparison of the differences in the NMR δ_C-values between 13²(S)- and 13²(R)-HO-Chl a as well as those between 13²(S)- and 13²(R)-HO-Chl b, indicated that the change of stereochemical configuration at C-13² induces only slight differences in the δ_C-values. Of special interest are the δ_C-values of C-13², which are at ca. 91 ppm for the a- and b-series diastereomers. This carbon is deshielded by ca. 25 ppm relative to the C-13² of 13²(R)-Chl a (δ_C=65.5). Owing to this, ¹³C NMR spectroscopy is a good method to distinguish the 13²-hydroxylated chlorophylls from the intact, naturally occurring chlorophylls.     

Synthesis, characterization and crystal structures of cyclometallated palladium (II) compounds containing difunctional ligands with [P,P], [As,As], [N,N], [P,As], [P,N] and [P,O] donor atoms

Treatment of the chloro-bridged dinuclear complex [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}(μ-Cl)]₂ (1) with homobidentate [P,P], [As,As], [N,N], and heterobidentate [P,As], [P,N] ligands in a 1:1 molar ratio gave the dinuclear complexes [{Pd[3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N](Cl)}₂{μ-L}] (L = Ph₂PC₄H₆(NH)CH₂PPh₂ (2); Ph₂As(CH₂)₂AsPh₂ (3); 1,3-(NH₂CH₂)₂C₆H₄ (4); Ph₂P(CH₂)₂AsPh₂ (5); Ph₂P(CH₂)₂NH₂ (6)), with the bidentate ligands bridging the two cyclometallated fragments.The reaction with the homobidentate ligands in a 1:2 molar ratio in the presence of NaClO₄ afforded the mononuclear compounds [[Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{L-P,P}][ClO₄] (L = Ph₂PC₄H₆(NH)CH₂PPh₂ (7); (o-Tol)₂P(CH₂)₂P(o-Tol)₂ (8)), [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{Ph₂As(CH₂)₂AsPh₂-As,As}][ClO₄] (9) and [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{L-N,N}][ClO₄] (L = NH₂(CH₂)₃NH₂ (10); NH₂(C₆H₈)CH₂(C₆H₈)NH₂ (11); 1,3-(NH₂CH₂)₂C₆H₄ (12); 1,3-(NH₂)₂C₅H₃N (13); NH₂(C₆H₄)O(C₆H₄)NH₂ (14); NMe₂(CH₂)₂NMe₂ (15)), in which the chloro ligands are absent and the bidentate ligands are chelated to the palladium atom.Reaction of 1 with Ph₂P(CH₂)₂AsPh₂ in 1:2 molar ratio in acetone in the presence of NH₄PF₆ afforded the analogous mononuclear compound [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{Ph₂P(CH₂)₂AsPh₂-P,As}][PF₆] (16); whereas reaction with Ph₂P(CH₂)₃NH₂ gave [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{Ph₂P(CH₂)₃N(CMe₂)-P,N}][PF₆] (17), derived from intermolecular condensation between the aminophosphine and acetone. Condensation of the NH₂ group was precluded by change of solvent, using dichloromethane.Iminophoshines also reacted with 1 in 1:2 molar ratio in acetone to give a new series of mononuclear cyclometallated complexes: [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{L-P,N}][ClO₄] (L = Ph₂PC₆H₄C(H)NCy (20); Ph₂PC₆H₄C(H)NC(CH₃)₃ (21); Ph₂PC₆H₄C(H)NNMe₂ (22); Ph₂PC₆H₄C(H)NNHMe (23); Ph₂PC₆H₄C(H)NNHPh (24)). Analogous complexes with a stable P,O-chelate were obtained using bidentate [P,O] donor ligands: [Pd{3,4-(MeO)₂C₆H₂C(H)N(Cy)-C6,N}{L-P,O}][Cl] (L = 2-(Ph₂P)C₆H₄CHO (25); Ph₂PN(Me)C(O)Me (26)).The crystal structures of compounds 1, 5, 15, 16, 18, 20 have been determined by X-ray crystallography.     

Demethoxycarbonylation and oxidation of 13(S/R)-hydroxy-chlorophyll a to 13-demethoxycarbonyl-13-oxo-chlorophyll a and Mg-purpurin-18 phytyl ester

The conversion of 13²(S/R)-hydroxy-chlorophyll (Chl) a to 13²-demethoxycarbonyl-13²-oxo-Chl a in a yield of 40%, utilizing a simple pyrolysis technique, is described. About 10% of the phytyl ester of Mg-purpurin-18 was formed as a side product. The completely assigned ¹H and ¹³C NMR spectra are presented for 13²-demethoxycarbonyl-13²-oxo-Chl a and a likely mechanism for its formation is proposed. A slight extension of this mechanism also explains the formation of the Mg-purpurin-18 side product. The proposed mechanism has several features comparable with those previously suggested for the allomerization of 13²(R/S)-Chl a. Attempts to apply the same pyrolysis method to prepare 13²-demethoxycarbonyl-13²-oxo-Chl b from 13²(S/R)-hydroxy-Chl b were unsuccessful.     

cis,cis,cis,cis-1,2,3,4,5-Pentakis(hydroxymethyl)cyclopentane

All-cis pentamethanolcyclopentane has been obtained in six steps by Diels–Alder condensation of maleic anhydride with (benzyloxymethyl)cyclopenta-2,4-diene, reduction of the anhydride to a diol that was protected as the acetonide. Then, ozonolysis of the double bond, followed by reduction led to a cis-diol. Then successive deprotections of the three other methanol groups gave the cis,cis,cis,cis-1,2,3,4,5-pentakis(hydroxymethyl)cyclopentane.     

Stereospecific preparation of (1E,3E,5E)-3.4-difluoro-1,6-diphenylhexatriene and (2E,4E,6E)-diethyl-4,5-difluoroocta-2,4,6-trienedioate

Palladium(0) catalyzed coupling of β-bromostyrene (E/Z = 89/11) with (E)-(1,2-difluoro-1,2-ethenediyl)bis[tributylstannane], 1, in DMF at room temperature stereospecifically gave only (1E,3E,5E)-3,4-difluoro-1,6-diphenylhexatriene. Similarly, palladium(0) catalyzed coupling of (E)-ethyl 3-bromoacrylate as the vinyl halide precursor stereospecifically gave (2E,4E,6E)-diethyl-4,5-difluoroocta-2,4,6-trienedioate. This work demonstrates that a non-fluorine-containing vinyl bromide will selectively undergo coupling with 1 and enable the stereospecific preparation of a mixed polyene system. The (E)-ethyl 3-bromoacrylate coupling with 1 illustrates that mixed functionalized hexatriene systems can be easily accessed via this methodology. The X-ray structure of (2E,4E,6E)-diethyl-4,5-difluoroocta-2,4,6-trienedioate confirmed its structure.     

Athrotaxis alkaloids. Part II. Alkaloids of a. selaginoides and a. laxifolia

The taxodeaceous plant A. Selaginoides contains six known homoerythrina-type alkaloids and selaginoidine, which has a furan ring replacing the benzene ring of the latter type. Selaginoidine and five of the six above-mentioned alkaloids also occur in A. laxifolia.     

A general approach toward Janus diones: synthesis of dicyclopenta[b,g]naphthalene-1,3,6,8(2H,7H)-tetraone

A general approach toward Janus diones involving the reaction of pyromellitic or naphthalenetetracarboxylic dianhydrides with ethyl(triphenylphosphoranylidene)acetate and subsequent rearrangement of the products is described. This approach allows avoiding the formation of poorly soluble intermediates, in which purity cannot be effectively controlled. Dicyclopenta[b,g]naphthalene-1,3,6,8(2H,7H)-tetraone 3, a promising precursor of molecular and polymeric advanced materials is described.     

Lycogladines A-H,fawcettimine-type Lycopodium alkaloids from Lycopodium complanatum var. glaucum Ching

Five new fawcettimine-type alkaloids (1–5) and three new natural products (6–8), along with four known analogues, fawcettimine (9), fewcettidine (10), lycopoclavamine B (11), and lycopladine B (12), were isolated from the whole plant of Lycopodium complanatum var. glaucum Ching. The structures of lycogladines A-H (1–8) were determined based on HRESIMS, 1D and 2D NMR spectroscopic analysis, as well as single-crystal X-ray diffraction. Compound 1 possesses a new ring system that is formed through the linkage of C-13-OC-2, which is rarely present in Lycopodium alkaloids (LAs). Compounds 1–8 were tested for their β-site amyloid precursor protein (APP)-cleaving enzyme 1 (BACE1) and acetylcholinesterase (AChE) inhibitory activities.     

Domino pericyclic reactions of acyclic conjugated (E,Z,E,E)-tetraenes

Acyclic conjugated (E,Z,E,E)-tetraenes, upon thermolysis, undergo a domino pericyclic process involving 6π electrocyclisation of the (E,Z,E)-triene moiety to give the corresponding cis-disubstituted 5-vinyl-1,3-cyclohexadienes, followed by an intramolecular Diels-Alder reaction with the vinyl side chain to give tricyclo[3.2.1.0^2,7]oct-3-enes.     

The alkaloids of Abuta imene and Abuta rufescens

The alkaloid fraction of either Abuta imene or Abuta rufescens was found to contain the oxoaporphines imenine, homomoschatoline, and imerubrine, as well as the azafluoranthenes imeluteine, rufescine and norrufescine. Structures are proposed for the new alkaloids imerubrine and norrufescine, and a synthesis of homomoschatoline is described.     

Synthesis of 2E,4E,6E,11Z-octadecatetraenoic acid of the Rhizobium leguminosarum biovar viciae Nod factor

2E,4E,6E,11Z-Octadecatetraenoic acid was synthesized in a good yield and in a stereospecific manner by coupling a vinylborane compound and ethyl trans-3-iodoacrylate. The trienic system (E,E,E) was obtained by successive use of metal-catalyzed coupling and hydro-metallation reactions.     

Synthesis and reactivity of Z and E functionalized allylic fluorides

The allylic fluorides 1 and 2 are used as models to study the effect of the allylic C-F bond on the diastereoselectivity of reactions occurring on the vicinal double bond, as well as the compatibility of this C-F bond with various reagents. The configurational stability of the Z double bonds in enals and enones 1 and 3 is noteworthy. This allowed us to perform various types of reactions (including thermal Diels-Alder cycloadditions) on derivatives 1 with full control of the Z geometry.     

C13-Methylation of methyl pheophorbide a and stereoselective preparation of methyl (13R)-methylpyropheophorbide a

The (13²R)-methoxycarbonyl group of methyl pheophorbide a, one of the chlorophyll-a derivatives, was converted to a methyl group through methylation at the C13² position followed by removal of the methoxycarbonyl group. The methylation of the C13² carboanion gave a 4:1 mixture of methyl 13²-methyl-pheophorbide a and its 13²-epimer. The successive pyrolysis of the major methylated product afforded methyl (13²R)-methyl-pyropheophorbide a with a small amount of its (13²S)-epimer. The substitution effects at the C13² position including stereochemistry were discussed on the basis of 1D/2D NMR, UV–vis absorption, and circular dichroism spectroscopic analyses as well as molecular modeling simulation.     

Highly enantioselective aldol reactions using a tropos dibenz[c,e]azepine organocatalyst

The four-step synthesis of a chiral primary tertiary diamine salt, possessing a tropos dibenz[c,e]azepine ring is described. It is shown that 3.5-5 mol % of this salt is capable of promoting highly enantioselective crossed-aldol reactions between cyclohexanone and a series of aromatic aldehydes. In all cases, the aldol reactions proceed with high diastereoselectivity for the anti-aldol product. The outcome of crossed-aldol reactions involving other cyclic ketones and acyclic ketones are also described. All examples involving cyclic ketones result in selectivity for the anti-aldol products, whereas acyclic ketones were found to favour the syn-aldol products. A discussion on the role of the chiral primary tertiary diamine salt in the catalysis of the aldol reactions is also presented.     

Conformational analysis of bridgehead-substituted bicyclo[m.m.m]alkanes and bicyclo[8.8.n]alkanes

Conformational analyses of bicyclo[m.m.m]alkanes where m=1-10 and of bicyclo[8.8.n]alkanes where n=1-7 bearing methyl groups on the bridgeheads were carried out using a Monte Carlo search strategy. In the bicyclo[m.m.m]alkane series, greater variability was observed for the inter-bridgehead distance for larger values of m. This suggests that properly substituted bicyclo[8.8.8]hexacosanes or larger ring systems might serve as molecular springs.     

Synthesis of the Janus integer pheromone (4R,9Z)-9-octadecen-4-olide

The synthesis of (4R,9Z)-9-octadecen-4-olide 1, the female sex pheromone of Janus integer is reported using a Zipper isomerization reaction as the key step.     

Hydrogen bonding in cis and trans 1-t butylcyclohexan-4-ol

The homogeneous autoassociation of cis and trans 1-t-butylcyclohexan-4-ol has been investigated by means of IR spectroscopy. The temperature and concentration dependences of this interaction have been examined in CCl₄ as solvent. The results demonstrate a lower degree of association in the case of the cis compound, especially because of the steric hindrance of the acceptor function of this substance. The enthalpy of associatio-n-ΔH is found at about 13 [kJ/mole] for the trans compound and may be somewhat lower for the cis alcohol. The absorbance of the associated OH band of the trans compound is constant with varying concentration and/or temperature, but for the cis alcohol it increases with increasing concentration and decreasing temperature.     

Lipase from Carica papaya latex presents high enantioselectivity toward the resolution of prodrug (R,S)-2-bromophenylacetic acid octyl ester

Besides the well-known papain, lipolytic activity is another interesting enzymatic activity present in latex from Carica papaya. This lipolytic activity is strongly attached to the latex solid phase, resulting in a naturally immobilized biocatalyst. In this work we describe the kinetic resolution of (R,S)-2-bromophenylacetic acid octyl ester by Carica papaya crude latex and two partially purified latex fractions. Several parameters, such as substrate concentration and solvent effects were studied. The best results were obtained using decane as solvent with 50 mM of substrate and 50 mg/mL enzyme/reaction medium; under these conditions, a high enantioselectivity (E >200) was obtained with crude latex. A twofold increase of the initial rate maintaining E >200 was obtained using purified fractions without protease and without esterase. Lipase from Carica papaya latex is the most enantioselective wild-type enzyme ever described for the studied reaction.