Investigation of dynamic equilibria using NMR spectroscopy II. An example of a weak intramolecular interaction

A weak intramolecular interaction between the 4,6-dioxo-1,3-dioxane and the phenyl residue in substituted spiro-cyclopropanes was found to determine the conformation of the molecules under investigation.

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Untersuchung dynamischer Gleichgewichte mit Hilfe der Kernresonanzspektroskopie II. Ein Beispiel einer schwachen intramolekularen Wechselwirkung.Kurze mitteilung

Zusammenfassung Es wird gezeigt, daß eine schwache intramolekulare Wechselwirkung zwischen dem 4,6-Dioxo-1,3-dioxan- und dem Phenyl-Rest in den untersuchten substituierten Spiro-cyclopropanen für die Konformation in Lösung verantwortlich ist.

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E. Haslinger andP. Wolschann, Mh. Chem.109, 1177 (1978).     

Water-protein interactions in microcrystalline crh measured by 1H-13C solid-state NMR spectroscopy

Using solid-state NMR carbon-proton dipolar correlation spectroscopy, we observed hydrogen exchange on the millisecond time scale between water molecules and protein protons in a solid sample. These interactions are shown to be related to important structural features of the protein such as hydrogen-bonding or salt-bridge networks.     

Line narrowing in methyl-TROSY using zero-quantum 1H-13C NMR spectroscopy

An enhanced sensitivity zero-quantum correlation experiment is proposed for recording (1)H-(13)C correlations of methyl groups in highly deuterated, methyl protonated large proteins. The zero-quantum spectra benefit from TROSY-effects in which both intra- and inter-methyl dipolar relaxation interactions are minimized. Applications to malate synthase G at 5 degrees C (81 kDa single polypeptide chain enzyme, correlation time of 118 ns) and lysine decarboxylase at 45 degrees C (810 kDa decameric enzyme) are presented showing significant improvements in resolution relative to corresponding HMQC data sets, with only slight decreases (approximately 10%) in sensitivity.     

Probing the microstructure of Nafion-117 using positron annihilation spectroscopy

We report a new result on positron annihilation studies in acid- and cation-neutralized (Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺, UO₂²⁺, Ni²⁺) Nafion membranes using positron lifetime and Doppler-broadened annihilation radiation (DBAR) measurements. The free-volume structure is characterized using a simple quantum mechanical model of positronium (Ps) in a spherical well. Our studies indicate that formation and expansion of clusters is always associated with a change in free-volume structure resulting in smaller free-volume holes. © 1997 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 35: 771–776, 1997     

Vibrational spectroscopy and intramolecular dynamics of 1-butyne

Photodissociation of jet-cooled vibrationally excited 1-butyne, C(2)H(5)C[Triple Bond]C[Single Bond]H, coupled with mass spectrometric detection of H photofragments, facilitated measurements of action spectra and Doppler profiles, expressing the yield of the ensuing fragments versus the vibrational excitation and UV probe lasers, respectively. Both the action spectra and the simultaneously measured room temperature photoacoustic spectra in the 2nu(1), 3nu(1), and 4nu(1) C[Single Bond]H acetylenic stretch regions exhibit unresolved rotational envelopes with significant narrowing of the former due to temperature-related change in the rotational structure. The narrowing of the action spectrum in the 3nu(1) region exposed a resonance splitting, implying intramolecular vibrational energy redistribution (IVR) time of approximately 1 ps. Asymmetric rotor simulation of the band contours provided the rotational constants and estimates for the homogeneous broadening arising from IVR to the bath vibrational states. The homogenous linewidth of 4nu(1) is anomalously narrower than that of 2nu(1) and 3nu(1), indicating a longer lived 4nu(1) state despite the increasing background state density, suggestive of a lack of low-order resonances or of mode-specific coupling with the bath states. The Doppler profiles indicate that the H photofragments are released with low average translational energies, pointing to an indirect dissociation process occurring after internal conversion (IC) to the ground electronic state or after IC and isomerization to butadiene.     

(119/117/115)Sn low-abundance single-transition correlation spectroscopy (LASSY): sensitivity-enhanced homonuclear correlation experiments for Sn NMR

We report the implementation of our novel rare-spin homonuclear correlation experiment, namely, Low-Abundance Single-transition correlation SpectroscopY (LASSY), for (119/117/115)Sn NMR at natural abundance. Our pulse sequence results in diagonal suppressed COSY-style display and outperforms the optimal homonuclear correlation experiment for rare spins, which involves double quantum evolution (INADEQUATE CR). The new experiment maximizes efficiency both in respect of pulse transformations as well as relaxation effects, and gives rise to a simplified two-dimensional (2D) spectrum with considerably reduced crowding, exhibiting only one transition in each cross peak, instead of four. Performance optimization of LASSY is carried out in light of the relatively 'large' line widths typical of Sn NMR in solution state. The superior performance of the sequence is demonstrated on dimeric tetraorganodistannoxane samples.     

Weak intramolecular interactions in ethylene glycol identified by vapor phase OH-stretching overtone spectroscopy

Vapor phase OH-stretching overtone spectra of ethylene glycol were recorded to investigate weak intramolecular hydrogen bonding. The spectra were recorded with conventional absorption spectroscopy and laser photoacoustic spectroscopy in the first to fourth OH-stretching overtone regions. The room-temperature spectra are dominated by two conformers that show weak intramolecular hydrogen bonding. A less abundant third conformer, with no sign of hydrogen bonding, is also observed. Vapor phase spectra of the ethylene-d(4) glycol isotopomer were also recorded and used to identify an interfering resonance between CH-stretching and OH-stretching states in the fourth overtone. Anharmonic oscillator local mode calculations of the OH-stretching transitions have provided an accurate simulation of the observed spectra. The local mode parameters were calculated with coupled cluster ab initio methods. The calculations facilitate assignment of the different conformers in the spectra and illustrate the effect of the intramolecular hydrogen bonding.     

Self-assembly of nanotubes and ordered mesostructures using weak interactions

Two simple organic compounds, 5-nitroisophthalic acid (npa) and 4,4′-bipyridine (bpy), were used as building blocks for supramolecular self-assembly by hydrothermal synthesis. SEM, TEM, and XRD were used to analyse the multi-step assembly process in which npa and bpy assembled into nanotubes (or nanobelts) of about 30–100 nm in diameter and several millimetres in length and microtubes (or microbelts). The tubes then further assembled to form complex ordered structures, such as pom-pom-shaped and flower-like mesostructures.     

Supramolecular balance: using cooperativity to amplify weak interactions

Gathering precise knowledge on weak supramolecular interactions is difficult yet is of utmost importance for numerous scientific fields, including catalysis, crystal engineering, ligand binding, and protein folding. We report on a combined theoretical and experimental approach showing that it is possible to vastly improve the sensitivity of current methods to probe weak supramolecular interactions in solution. The concept consists of using a supramolecular platform involving a highly cooperative configurational transition, the perturbation of which (by the modification of the molecular building blocks) can be monitored in a temperature scanning experiment. We tested this concept with a particular bisurea platform, and our first results show that it is possible to detect the presence of interaction differences as low as 60 J/mol, which may be due to steric repulsion between vinyl and alkyl groups or may be the result of solvation effects.     

The effect of the solvents on the specific intramolecular C-H...N interactions studied by1H NMR spectroscopy

The analysis of the effect of the solvents on the proton chemical shifts in¹H NMR spectra of 2-vinyloxypyridine indicates that the C—H...N interaction of weak intramolecular hydrogen bond type hinders the formation of intermolecular hydrogen C—H...X and C-H... bonds. The protonating solvents reduce the intramolecular C—H...N interaction due to association with the N atom of the pyridine cycle.Translated fromIzvestiya Akademii Nauk. Seriya Khimieheskaya, No. S, pp. 1202–1204, May, 1996.     

Control of photochemical, photophysical, electrochemical, and photocatalytic properties of rhenium(I) complexes using intramolecular weak interactions between ligands

Intramolecular interactions between ligands have been successfully applied as a novel tool for controlling various properties of a series of cis,trans-[Re(dmb)(CO)(2)(PR(3))(PR'(3))](+)-type complexes (dmb = 4,4'-dimethyl-2,2'-bipyridine), in the ground state and in the excited state and in the one-electron reduced form. For rhenium complexes with two triarylphosphine ligands, P(p-XPh)(3), the dmb ligand was sandwiched by four aryl rings having CH(aryl)-pi(pyridine)-pi(aryl) interactions. On the other hand, complexes with one triarylphosphine ligand and one trialkylphosphite ligand, P(OR)(3), had pi-pi and CH-pi interactions between each pyridine ring in the dmb ligand and the aryl group in the P(p-XPh)(3). Various properties of these two series of rhenium complexes were compared with those of complexes having two trialkylphosphite ligands, which do not interact through space with the dmb ligand. Properties of the complexes associated mainly with the dmb ligand are strongly affected by the intramolecular interactions: (1) UV/vis absorptions to the pi-pi and (1)MLCT excited states were both red-shifted, but (2) emission from the (3)MLCT excited state was blue-shifted; (3) the lifetime of the (3)MLCT excited state was prolonged up to 3-fold; (4) the reduction potential in the ground state was positively shifted by 110 mV with pi-pi and CH-pi interactions and by 180-200 mV with the CH-pi-pi interactions. (5) In the excited states, the oxidation power of the complex was also enhanced by the intramolecular interactions. (6) In the corresponding one-electron-reduced species cis,trans-[Re(dmb(-.)(CO)(2)(PR(3))(PR'(3))], the intramolecular interactions are maintained and strongly affected their UV/vis spectra. (7) Photocatalysis for CO(2) reduction was significantly enhanced only by the CH-pi-pi interaction.     

N,N-Dimethylaminopropylsilane: a case study on the nature of weak intramolecular Si...N interactions

N,N-Dimethylaminopropylsilane H(3)Si(CH(2))(3)NMe(2) was synthesised by the reaction of (MeO)(3)Si(CH(2))(3)NMe(2) with lithium aluminium hydride. Its solid-state structure was determined by X-ray diffraction, which revealed a five-membered ring with an SiN distance of 2.712(2) A. Investigation of the structure by gas-phase electron diffraction (GED), ab initio and density functional calculations and IR spectroscopy revealed that the situation in the gas phase is more complicated, with at least four conformers present in appreciable quantities. Infrared spectra indicated a possible SiN interaction in the Si-H stretching region (2000-2200 cm(-1)), as the approach of the nitrogen atom in the five-membered ring weakens the bond to the hydrogen atom in the trans position. Simulated gas-phase IR spectra generated from ab initio calculations (MP2/TZVPP) exhibited good agreement with the experimental spectrum. A method is proposed by which the fraction of the conformer with a five-membered ring can be determined by a least-squares fit of the calculated to experimental absorption intensities. The abundance of this conformer was determined as 23.7(6) %, in good agreement with the GED value of 24(6) %. The equilibrium SiN distance predicted by theory for the gas-phase structure was highly variable, ranging from 2.73 (MP2) to 3.15 A (HF). The value obtained by GED is 2.91(4) A, which could be confirmed by a scan of the potential-energy surface at the DF-LCCSD[T] level of theory. The nature of the weak dative bond in H(3)Si(CH(2))(3)NMe(2) can be described in terms of attractive inter-electronic correlation forces (dispersion) and is also interpreted in terms of the topology of the electron density.     

Measurement of free-volume hole size distribution in Nafion-117 using positron annihilation spectroscopy

We report a new result of free-volume hole size distribution in water and ethanol-swollen Nafion-117 polymer. With the increase in water content, free-volume hole size decreases, but overall the volume fraction increases. The hole size distribution in dry polymer is seen to be distinctly different from hydrated membranes. The narrow and symmetric distribution in hydrated membrane as compared to dry membrane is believed to be a consequence of crosslinking due to cluster formation. In alcohol-swollen membranes, on the other hand, not only are the free-volume size and fraction seen to be higher, the hole size distribution is seen to be broader compared to dry or hydrated membranes, indicating the effect of penetration of alcohol into the hydrophobic backbone region. We have also examined our results vis-a-vis reported gas diffusion studies in Nafion in the framework of existing free-volume model. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36: 983–989, 1998     

A search for carbene-solvent interactions using time-resolved infrared spectroscopy

[reaction: see text] The time-resolved infrared (TRIR) spectra of chlorophenylcarbene (CPC) and fluorophenylcarbene (FPC) were recorded in heptane at ambient temperature. The C[bond]C and C[bond]F vibrational frequencies involving the carbene carbon were obtained in heptane, benzene, and acetonitrile and in heptane containing 0.1M tetrahydrofuran or benzene. It is concluded that carbene-solvent interactions of CPC and FPC are quite weak.     

High-resolution four-dimensional 1H-13C NOE spectroscopy using methyl-TROSY, sparse data acquisition, and multidimensional decomposition

An approach for recording four-dimensional (4D) methyl (1)H-(13)C-(13)C-(1)H NOESY spectra with high resolution and sensitivity is presented and applied to Malate Synthase G (723 residues, 82 kDa). Sensitivity and resolution have been optimized using a highly deuterated, methyl-protonated sample in concert with methyl-TROSY, sparse data sampling in the three indirect dimensions, and 4D spectral reconstruction using multidimensional decomposition (MDD). A sparse data acquisition protocol is introduced that ensures that sufficiently long indirect acquisition times can be employed to exploit the decreased relaxation rates associated with methyl-TROSY, without increasing the duration of the 4D experiment beyond acceptable measurement times. In this manner, only a fraction ( approximately 30%) of the experimental data that would normally be needed to achieve a spectrum of high resolution is acquired. The reconstructed 4D spectrum is of similar resolution and sensitivity to three-dimensional (3D) (13)C-edited NOE spectra, is straightforward to analyze, and resolves ambiguities that emerge when 3D data sets only are considered.     

Ultrafast intramolecular charge transfer of formyl perylene observed using femtosecond transient absorption spectroscopy

The excited-state photophysics of formylperylene (FPe) have been investigated in a series of nonpolar, polar aprotic, and polar protic solvents. A variety of experimental and theoretical methods were employed including femtosecond transient absorption (fs-TA) spectroscopy with 130 fs temporal resolution. We report that the ultrafast intramolecular charge transfer from the perylene unit to the formyl (CHO) group can be facilitated drastically by hydrogen-bonding interactions between the carbonyl group oxygen of FPe and hydrogen-donating solvents in the electronically excited state. The excited-state absorption of FPe in methanol (MeOH) is close to the reported perylene radical cation produced by bimolecular quenching by an electron acceptor. This is a strong indication for a substantial charge transfer in the S(1) state in protic solvents. The larger increase of the dipole moment change in the protic solvents than that in aprotic ones strongly supports this observation. Relaxation mechanisms including vibrational cooling and solvation coupled to the charge-transfer state are also discussed.