Axial and equatorial hydrogen-bond conformers between (CH2)3S and H(D)F: Fourier transform infrared spectroscopy and ab initio calculations

The coexistence of axial and equatorial hydrogen-bonded conformers of 1?:?1 (CH(2))(3)S-HF (and -DF) has been observed in the same adiabatic expansion of a supersonic jet seeded with argon and in a static absorption cell at room temperature. High level calculations computed the axial conformer to be the most stable one with a small energy difference with respect to the equatorial one, in full agreement with previous microwave experiments. On the grounds of band contour simulations of FTIR spectra and ab initio energetic and anharmonic vibrational calculations, two pairs of ν(s) HF donor stretching bands, observed in a series of jet-FTIR spectra at 3457.9 and 3480.5 cm(-1) have been respectively assigned to the axial and equatorial forms of the 1?:?1 complex. In the jet-FTIR spectra series with HF, the assignment of an additional broad band (about 200 cm(-1) higher in frequency with respect to ν(s)) to a 1?:?2 complex has been supported by theoretical investigations. Experimental detection of both axial and equatorial forms of a cyclic trimer has been confirmed by calculated energetic and vibrational properties. The nature of hydrogen bonding has been examined within topological frameworks. The energetic partitioning within the 1?:?1 dimers has been elucidated with SAPT techniques. Interestingly, the interconversion pathway between two 1?:?1 structures has been explored and it was seen that the formation of the 1?:?1 complex affects the interconversion barrier on the ring puckering motion. The band contour analysis of gas phase FTIR experiments provided a consistent set of vibrational frequencies and anharmonic coupling constants, in good agreement with ab initio anharmonic vibrational calculations. Finally, from a series of cell-FTIR spectra recorded at different partial pressures of (CH(2))(3)S and HF monomers, the absorption signal of the 1?:?1 complex could be isolated which enabled to estimate the equilibrium constant K(p) = 0.023 at 298 K for the dimerization.     

Slow photoelectron velocity-map imaging spectroscopy of the n-methylvinoxide anion

High resolution photoelectron spectra of the n-methylvinoxide anion and its deuterated isotopologue are obtained by slow electron velocity-map imaging. Transitions between the X?(1)A' anion ground electronic state and the radical X?(2)A" and A?(2)A' states are observed. The major features in the spectra are attributed to transitions involving the lower energy cis conformers of the anion and neutral, while the higher energy trans conformers contribute only a single small peak. Franck-Condon simulations of the X?(2)A" ← X?(1)A' and A?(2)A' ← X?(1)A' transitions are performed to assign vibrational structure in the spectrum and to aid in identifying peaks in the cis-n-methylvinoxy X? (2)A" band that occur only through vibronic coupling. The experimental electron affinity and A? state term energy are found to be EA = 1.6106 ± 0.0008 eV and T(0) = 1.167 ± 0.002 eV for cis-n-methylvinoxy.     

Terahertz absorption of DNA decamer duplex

This work combines experimental and theoretical approaches to investigate terahertz absorption spectra of the DNA formed by the sequence oligomer 5'-CCGGCGCCGG-3'. The three-dimensional structure of this self-complimentary DNA decamer has been well-studied, permitting us to perform direct identification of the low-frequency phonon modes associated with specific conformation and to conduct comprehensive computer simulations. Two modeling techniques, normal-mode analysis and nanosecond molecular dynamics with explicit solvent molecules, were employed to extract the low-frequency vibrational modes based on which the absorption spectra were calculated. The absorption spectra of the DNA decamer in aqueous solution were measured in the frequency range 10-25 cm(-1) using the terahertz Fourier transform infrared spectroscopy. Multiple well-resolved and reproducible resonance modes were observed. When calculated and experimental spectra were compared, the spectrum based on molecular dynamics simulations showed a better correlation with the experimental spectra than the one based on normal-mode analysis. These results demonstrate that there exist a considerable number of active low-frequency phonon modes in this short DNA duplex.     

Fine structure at the carbon 1s K edge in vapours of simple hydrocarbons

Electron yield spectra in the range of 280 ? ?ω ? 300 eV which basically resemble the absorption spectra, have been measured for gaseous methane, ethane, ethylene, benzene and acetylene using synchrotron radiation. The spectra being fairly simple compared to the valence shell absorption are characterized by weak maxima for energies below the ionization threshold for C 1s for methane and ethane whereas additional strong resonances are observed in the spectra from molecules containing π-electrons. The nature of these excitations is discussed on the basis of their term values using information from XPS-measurements.     

Uracil on Cu(110): a quantitative structure determination by energy-scanned photoelectron diffraction

The local adsorption site of the nucleobase uracil on Cu(110) has been determined quantitatively by energy-scanned photoelectron diffraction (PhD). Qualitative inspection of the O 1s and N 1s soft x-ray photoelectron spectra, PhD modulation spectra, and O K-edge near-edge x-ray adsorption fine structure indicate that uracil bonds to the surface through its nitrogen and oxygen constituent atoms, each in near atop sites, with the molecular plane essentially perpendicular to surface and aligned along the close packed [110] azimuth. Multiple scattering simulations of the PhD spectra confirm and refine this geometry. The Cu-N bondlength is 1.96 ± 0.04 ?, while the Cu-O bondlengths of the two inequivalent O atoms are 1.93 ± 0.04 ? and 1.96 ± 0.04 ?, respectively. The molecule is twisted out of the [110]direction by 11 ± 5°.     

Electron spin resonance study of γ-irradiated poly(acrylic acid)

Electron spin resonance (ESR) spectra of poly(acrylic acid) (PAA) γ-irradiated in air at room temperature and recorded at room temperature and at liquid-nitrogen temperature have been studied to identify the radiation products. The ESR spectra are composed of eight lines with hyperfine splittings of 23 ± 1 G and 11 ± 1 G. The method of least-squares total curve fitting, employing the Lorentzian line shape function, to the observed spectra enabled the assignment of the spectra. Computed spectra obtained by the superposition of a singlet and the spectra due to chain radicals are considered to give the best fits to the observed ESR spectra. The singlet is assigned to the radicals COOH, and the component 10-line spectra are assigned to the chain radicals CH₃? CH? CH₂ ～ and/or ～ CH₂? CH? CH₂ ～. The observed change in line shape with temperature of the ESR spectra is attributed to the hindered oscillations of the methyl groups about the C_α? C_β bond axis of the chain radicals. The existence of the methyl groups is confirmed by the measurement of infrared absorption.     

Dissolution nature of cesium fluoride by water molecules

The structures, stabilities, thermodynamic quantities, dissociation energies, infrared spectra, and electronic properties of CsF hydrated by water molecules are investigated by using density functional theory, M?ller-Plesset second-order perturbation theory (MP2), coupled cluster theory with singles, doubles, and perturbative triples excitations (CCSD(T)), and ab initio molecular dynamic (AIMD) simulations. It is revealed that at 0 K three water molecules (as a global minimum structure) begin to half-dissociate the Cs-F, and six water molecules (though not a global minimum energy structure) can dissociate it. By the combination of the accurate CCSD(T) conformational energies for Cs(H2O)6 at 0 K with the AIMD thermal energy contribution, it reveals that the half-dissociated structure is the most stable at 0 K, but this structure (which is still the most stable) changes to the dissociated structure above 50 K. The spectra of CsF(H2O)(1-6) from MP2 calculations and the power spectra of CsF(H2O)6 from 50 and 100 K AIMD simulations are also reported.     

Absorption spectra of poly-N-vinylcarbazole derivatives by experiment and simulation

Geometry molecular optimization and quantum chemical simulations of absorption spectra for newly synthesized poly-N-vinylcarbazole derivatives were performed using a semi-empirical approach. The studied polymers were modified by changing the positions of the carbazole group with respect to the polymer backbone. The absorption spectra were calculated for different numbers of PNVK monomers. A sufficient agreement between the calculated and experimentally measured spectra was observed. A change of the red shift absorption with respect to the blue shift was observed for cases when the number of monomers was higher than 4. The theoretical simulations indicate that this behavior is a consequence of the specific molecular structure of the considered molecules. The results demonstrate the potential of combined simulation and experimental studies in materials engineering and searching of new electro-luminescent materials.     

Platinum coordination compounds of thiosemicarbazide derivatives: a new class of platinum blues

Platinum(II) forms blue 1?:?2 coordination compounds with 1-phenylthiosemicarbazide [H(1-PTSC)], 4-phenylthiosemicarbazide [H(4-PTSC)], 1,4-diphenylthiosemicarbazide [H(1,4-DPTSC)] and 4-(2-pyridyl)-thiosemicarbazide [H(4-(2py)-TSC)]. Electronic spectra of these compounds have been studied in different solvents. In all compounds, a band is observed in the 650–750?nm region that appears to be a metal-to-ligand charge transfer band. Infrared and proton NMR studies have been carried out to determine possible coordination sites and the nature of the complexes. IR spectra indicate bonding through sulfur and nitrogen and proton NMR spectra indicate bonding through the N¹nitrogen.     

The NMR spectra of some fluorinated pyridine derivatives

The ¹H and ¹⁹F spectra of a variety of mono- and di- fluorinated pyridines are examined, and compared with the corresponding spectra of the pyridinium ions. The magnitudes and signs of the ¹H? ¹⁹F coupling constants are in general in accord with those observed for the corresponding ¹H? ¹H couplings, with an exaggerated range. Large changes in the NMR parameters are observed on protonation of the nitrogen, ³J(H? F) changing sign in some of the α-fluoropyridine derivatives.     

Combined X-ray absorption spectroscopy and density functional theory examination of ferrocene-labeled peptides

A combination of soft X-ray absorption spectroscopy (XAS) measurements and StoBe density functional theory (DFT) calculations has been used to study the electronic structures of the ferrocene-labeled peptides Fc-Pro(n)-OBz (n = 1-4). Excellent agreement between the measured and the simulated data is observed in all cases, and the origin of all major spectral features was assigned. The breaking of the degeneracy of the ferrocene 3e(2u)-like unoccupied molecular orbital under the influence of a substituent attached to a Cp ring was observed experimentally. The influence of the bonding environment on the O 1s and N 1s XAS spectra was examined. A corrected assignment of one of the major features in the Fe 2p XAS spectra of ferrocene is proposed and supported by the DFT simulations, as well as the measured spectra.     

Pendular-state spectroscopy of the S(1)-S(0) electronic transition of 9-cyanoanthracene

Fluorescence excitation spectra of the S(1)-S(0) origin band of 9-cyanoanthracene have been observed under a uniform electric field up to 200 kV/cm to explore pendular-state spectrum of an asymmetric-top molecule close to the strong field limit. The observed spectra exhibit distinct evolution of the band contour as a function of the applied electric field, which are much different from each other for different excitation configurations. An approximate method suitable for spectrum simulations of large asymmetric-top molecules in a pendular condition is developed for the analysis of the experimental results. The comparison of the observed and simulated spectra shows that the spectra are well ascribed in terms of the pendular-state selection rules, which have recently been derived from theoretical consideration of the pendular-limit representation of energy levels and spectra.     

Influence of bond lengths between substituents and mother molecule on spectral properties of pyrazoloquinolines

Absorption and luminescent spectra of several new synthesized pyrazolo-quinoline possessing different substituents are studied. Absorption spectra of all the considered compounds possess five relatively strong absorption bands at about 430, 320, 270, 253 and about 230 nm. A correlation between the bond lengths between the substituent molecule and mother molecule with the observed spectral shifts was found. Theoretical spectra obtained within semi-empirical quantum chemical AM1 calculation methods seem to be more widened compared to the experimental ones due to electron-vibration interactions. However generally a good coincidence between spectral positions between experimental and calculated spectral peak positions was achieved. The corresponding experimental spectra have an absorption edges situated at about 430 nm which appears in fairly good agreement with quantum chemical simulations, namely for absorption spectra calculated by semi-empirical AM1-method. The red shifts in the experimental luminescence spectra are a consequence of electron-vibration interactions which increase with the effective radius and polarizabilities of the particular substituents.     

Hyperfine interaction in K2Ba[Fe(NO2)6

Magnetic hyperfine splitting observed in the low temperature M?ssbauer spectrum of potassium barium hexanitro ferrate(II), in the absence of any external field, is attributed to the 5T2g state of the central metal atom further split into a ground 5Eg state and a first excited 5B2g state under a distorted octahedral symmetry in contrast to the earlier prediction of 1A1g ground state on the basis of room temperature M?ssbauer spectral and other properties. The central iron atom is coordinated to six nitrito groups (NO2-), having an oxidation state of +2. The temperature dependence of M?ssbauer spectra is explained on the basis of electronic relaxation among the spin-orbit coupled levels of the 5Eg ground state. Various kinds of electronic relaxation mechanisms have been compared to explain the proposed mechanism. The observed temperature dependent spectra with varying internal magnetic field and line width can be explained by simple spin lattice relaxation.     

Formation of free radicals in photoirradiated cellulose. V. Effect of temperature

ESR spectra of purified and ferric ion-sensitized celluloses irradiated with ultraviolet light in vacuo at 45, 20, ?80, and ?196°C were recoreded and compared. Generally, several kinds of spectra, viz., singlet, three-line, five-line, and seven-line spectra, were observed. At higher temperatures, only singlet and three-line spectra of stable free-radical species were detected, whereas at lower temperatures such as at ?196°C, two doubled spectra of formyl radicals and hydrogen atoms were also detected in addition to cellulose radicals. It is believed that the intricate spectra observed at low temperatures are superimposed upon spectra generated by free radicals which may or may not be stable at high temperatures. During reirradiation at ?196°C with an alternative light sources, i.e., λ > 2537 Å and λ > 3400 Å, of samples which were irradiated at 20°C or at ?196°C, phenomena indicative of radical transformation and formation of new radicals or of decay of radicals in terms of ultraviolet bleaching were observed on studying the changes of line-shapes and relative signal intensities of the spectra.     

Fourier transform infrared spectroscopy study of nanostructured nickel oxide

Nanostructured nickel oxide having different average particle sizes ranging from 3 to 16 nm were synthesized and Fourier transform infrared (FTIR) spectra of the samples were recorded in the far infrared (IR) region. The spectra were found to be dominated by surface mode absorptions with no distinct absorption corresponding to the bulk transverse optical mode. IR absorption coefficient, alpha, for the nanostructured NiO samples were calculated as a function of frequency using a macroscopic approach devised by Fuchs. The effects of crystalline geometry, numerical values of optical constants, filling factor and increased damping on the spectral features of the samples were analyzed. Though the simulations approximately reproduced the occurrence of a shoulder in the experimental spectra, the most intense peak in the simulated spectra was found to be about 50 cm(-1) above the corresponding experimentally observed peak. It was shown that the experimentally observed absorption maximum of all the samples were in close agreement with that determined using a microscopic theory based on the rigid ion model. The weak absorption peaks in the frequency region 60-100 cm(-1) appearing in the spectra of all the samples were identified as surface induced transverse acoustical modes, omegaTA, which became IR active due to the breakdown of translational symmetry in the nanocrystallites.     

Dynamical symmetry analysis of ionization and harmonic generation of atoms in bichromatic laser pulses

Recently the effect of the relative phase ? in a high‐intensity (～10¹⁴ W/cm²) two‐color (bichromatic) CW laser with frequencies ω and 2ω on the high‐order harmonic generation (HHG) was studied within the framework of the non‐Hermitian quantum mechanics (NHQM) [Phys Rev A 2004, 69, 043404/1]. Here we emphasize the study of symmetries in bichromatic HHG spectra within the framework of the conventional Hermitian QM, and in particular by taking the duration of the laser pulse into consideration (an effect that has not been included in the non‐Hermitian studies due to the time asymmetry problem in NHQM). The phase dependence of HHG and intense‐field ionization probability in a 1D Xe atom with symmetric field‐free potential and symmetric initial wave function were studied numerically and analytically. From simulations based on a single‐particle response it can be seen that the HHG spectra is symmetric with respect to inversion in the relative phase between the two colors ? only if ionization is forbidden in the system and the laser pulse is an adiabatic one. The HHG spectra is symmetric with respect to a π‐shift in ? whenever the laser pulse is an adiabatic one, either for bound or open (ionized) systems. The ionization probability is symmetric both to inversion or π‐shift in ?; the component probabilities (right‐ and left‐ionization probabilities) have the same ?‐dependence, up to a shift of π. © 2005 Wiley Periodicals, Inc. Int J Quantum Chem, 2005