Vibrational spectroscopy of solid state molecular dimers

The IR and Raman spectra of α- and β-perylene crystal vibrations are investigated, β-perylene is monomeric and α-perylene has face-to-face dimers. Frequencies and forms of the lattice vibrations as well as vibron relaxation and localization are discussed. Polarization ratios in α crystals are perturbed by coupling to dimer vibrations.     

Force spectroscopy of quadruple H-bonded dimers by AFM: dynamic bond rupture and molecular time-temperature superposition

We report on the application of the time-temperature superposition principle to supramolecular bond-rupture forces on the single-molecule level. The construction of force-loading rate master curves using atomic force microscopy (AFM)-based single-molecule force spectroscopy (SMFS) experiments carried out in situ at different temperatures allows one to extend the limited range of the experimentally accessible loading rates and hence to cross from thermodynamic nonequilibrium to quasi-equilibrium states. The approach is demonstrated for quadruple H-bonded ureido-4[1H]-pyrimidinone (UPy) moieties studied by variable-temperature SMFS in organic media. The unbinding forces of single quadruple H-bonding (UPy)2 complexes, which were identified based on a polymeric spacer strategy, were found to depend on the loading rate in the range of 5 nN/s to 500 nN/s at 301 K in hexadecane. By contrast, these rupture forces were independent of the loading rate from 5 to 200 nN/s at 330 K. These results indicate that the unbinding behavior of individual supramolecular complexes can be directly probed under both thermodynamic nonequilibrium and quasi-equilibrium conditions. On the basis of the time-temperature superposition principle, a master curve was constructed for a reference temperature of 301 K, and the crossover force (from loading-rate independent to -dependent regimes) was determined as approximately 145 pN (at a loading rate of approximately 5.6 nN/s). This approach significantly broadens the accessible loading-rate range and hence provides access to fine details of potential energy landscape of supramolecular complexes based on SMFS experiments.     

Vibrational anharmonicity effects in electronic tunneling through molecular bridges

Effects of anharmonic bridge vibrations on electronic tunneling in donor-bridge-acceptor complexes are studied using a model of anharmonic bridge vibration coupled nonlinearly to an electronic degree of freedom. An anharmonicity parameter is introduced, enabling to reproduce the standard harmonic model with linear coupling as a limiting case. The frequency of electronic tunneling oscillations between the donor and acceptor sites is shown to be sensitive to the nuclear anharmonicity, where stretching and compression modes have an opposite effect on the electronic frequency. This phenomenon, that cannot be accounted for within the harmonic approximation, is analyzed and explained.     

Vibrational dynamics of excited electronic states of molecular iodine

Femtosecond degenerate four-wave-mixing spectroscopy following an initial pump laser pulse was used to observe the wave packet dynamics in excited electronic states of gas phase iodine. The focus of the investigation was on the ion pair states belonging to the first tier dissociating into the two ions I-(1S) + I+(3P2). By a proper choice of the wavelengths of the initial pump and degenerate four-wave-mixing pulses, we were able to observe the vibrational dynamics of the B (3)Pi(u) (+) state of molecular iodine as well as the ion pair states accessible from there by a one-photon transition. The method proves to be a valuable tool for exploring higher lying states that cannot be directly accessed from the ground state due to selection rule exclusion or unfavorable Franck-Condon overlap.     

Molecular tectonics: design of luminescent H-bonded molecular networks

Using bis-amidinium dications as tetra H-bond donor tectons and Au(CN)(2)(-) anion, neutral 1-D networks based on a bis monohapto mode of H-bonding are obtained. Owing to the short metal-metal distance within the network, luminescent crystals are obtained. The emission phenomena may be tuned by the nature of the spacer connecting the two cyclic amidinium groups.     

Vibrational and electronic spectra of benzophenone in different phase states: Ab initio calculations and experiment

An ab initio method has been used to perform quantum mechanical calculations of the formation energy of different conformers of benzophenone: planar molecule, twisted molecule, planar molecule dimer, twisted molecule dimer; electronic and vibrational spectra of these conformers were also obtained. An assessment of the medium (solvent) influence on the optimal geometry, dipole moment and stability of different forms of benzophenone was performed in the self-consistent reaction field approximation. It is shown that the twisted conformer is more stable than the planar one (the difference of free energies is 32 kJ/mol for free molecules) and it becomes even more stable with the increase in solvent polarity. The calculated electronic and vibrational spectra agree well with the experimental data and properly reflect the complication of the vibrational spectrum when passing from the gaseous phase to the condensed state of benzophenone. The difference between spectral properties of the two dimer forms allows their identification from the spectra and qualitative explanation of the observed peculiarities of phosphorescence of the amorphous phase of benzophenone by the stabilization of different conformers.     

Environmental and excitonic effects on the first hyperpolarizability of polar molecules and related dimers

We investigate the second-order nonlinear optical properties of a push-pull chromophore in different external and supramolecular environments, through a combined experimental and theoretical approach. In particular, we compare the first hyperpolarizability (beta) of a model dipolar and polarizable chromophore with that of a charged analogue and of a molecular dimer based on the chromophore itself. We find that the beta value of the model chromophore in solutions of low-polarity solvents is strongly affected by association effects, already at concentrations of 10 (-3) M. The presence of a positive charge in close proximity to the chromophore is found to lead to a 100% increase of the beta response of the model push-pull chromophore. This effect is of major importance for biological applications, in particular when chromophores are used as markers in charged anisotropic environments. Finally, excitonic effects, beyond the Frenkel exciton approximation, are discussed for the dimer and found to be more important the higher the order of nonlinearity is.     

Calculation of the electronic properties of metal dimers

The low-energy excitation spectra of metal dimers are determined by solving exactly a realistic many-body Hamiltonian with inter- and intra-atomic Coulomb interactions. Our results for Cu₂ and Ag₂ are in very good agreement with the excitation energies derived from recent photodetachment experiments. The characteristics of the many-body excited states in these clusters are briefly discussed.     

Relativistic molecular orbital theory of zero-field splittings in triplets

A method of calculating matrix elements of 1/r₁₂ in a basis of Dirac scattered-wave (DSW) orbitals is outlined. In the limit c → ∞, this method reduces to that described by Cook and Karplus for non-relativistic orbitals. For triplet states that can be described by a single configuration with two unpaired electrons, the relativistic exchange integrals give not only the singlet—triplet splittings (as in non-relativistic theory), but also the spin—orbit contributions to the triplet zero-field splittings. Results are reported for the ³ (n → π*) excited state of γ-thiopyrone (4H-pyran-4-thione), which has a very large value of D (calc. ?31 cm^?1, exp. ?24 to ?28 cm^?1).     

On the electronic structure of the hydrogen-bond: Formamide and its dimers

The CNDO/2 method is applied to hydrogen-bonded systems treated as a single entity. The stabilization energies obtained are reasonable. The electron-displacements along the H-bond show -gain and -Ioss by the proton-donor atom and -loss with -gain by the proton acceptor. A slight overall transfer of charges is observed from one unit to the next.This work was supported by grant n 67-00-532 of the Délégation Générale á la Recherche Scientifique et Technique (Comité de Biologie Moléculaire).     

Intramolecular dimers: a new strategy to fluorescence quenching in dual-labeled oligonucleotide probes

Many genomics assays use profluorescent oligonucleotide probes that are covalently labeled at the 5' end with a fluorophore and at the 3' end with a quencher. It is generally accepted that quenching in such probes without a stem structure occurs through F?rster resonance energy transfer (FRET or FET) and that the fluorophore and quencher should be chosen to maximize their spectral overlap. We have studied two dual-labeled probes with two different fluorophores, the same sequence and quencher, and with no stem structure: 5'Cy3.5-beta-actin-3'BHQ1 and 5'FAM-beta-actin-3'BHQ1. Analysis of their absorption spectra, relative fluorescence quantum yields, and fluorescence lifetimes shows that static quenching occurs in both of these dual-labeled probes and that it is the dominant quenching mechanism in the Cy3.5-BHQ1 probe. Absorption spectra are consistent with the formation of an excitonic dimer, an intramolecular heterodimer between the Cy3.5 fluorophore and the BHQ1 quencher.     

Vibrational lineshapes of adsorbates: the role of substrate electronic excitations

The vibrational spectrum of an atom or molecule adsorbed on a metallic surface is influenced by the dynamic interaction between the localized oscillator and the continuum of electron-hole pair excitations in the solid. Features of an exactly soluble model for this interacting system are presented, the local spectral function is obtained in terms of calculable level shift and broadening functions, and some prototypical numerical results are displayed and discussed.     

Vibrational dynamics of carboxylic acid dimers in gas and dilute solution

Ultrafast mid-IR transient absorption spectroscopy has been used to study the vibrational dynamics of hydrogen-bonded cyclic dimers of trifluoroacetic acid and formic acid in both the gas and solution phases (0.05 M in CCl(4)). Ultrafast excitation of the broad O-H cyclic dimer band leads, in the gas phase, to large-scale structural changes of the dimer creating a species with a distinct free O-H stretching band on 20 ps and 200 ps timescales. These timescales are assigned to ring-opening and dissociation of the dimer, respectively. In the solution phase, no such structural rearrangement occurs and our results are consistent with previous studies. The gas phase dynamics are insensitive to both the specific excitation energy (over a span of 550 cm(-1)) and the chemical identity of the dimer.     

Vibrational structure of electronic transitions in conjugated molecules

A general approach is presented for calculating the vibronic structure (Frank-Condon factors) of electronic transitions in conjugated molecules. Application to the lowest allowed ΠΠ^* transition of ethylene, 1,3-cyclohexadiene, 1,3,5-hexatriene, and β-ionone are given.     

Vibrational relaxtion in excited electronic states of aromatic hydrocarbons

Time-resolved experiments are reported Showing kinetic evidence for vibrational relaxation of electronically excited molecules in solution at room temperature. The experiments involve higher electronic states of 3,4,9,10-dibenzpyrene. Data are consistent with slow vibrational relaxation (≈ 15 ps), similar to that for ground state species.     

Two-dimensional electronic spectra of symmetric dimers: Intermolecular coupling and conformational states

We study the information content of two-dimensional (2D) electronic photon-echo (PE) spectra, with special emphasis on their potential to distinguish, for waiting times T=0, between different conformations of electronically coupled symmetric dimers. The analysis is performed on the basis of an analytical formula for the frequency-domain 2D PE signal. The symmetric dimers are modeled in terms of two identical, energy-degenerate, excitonically coupled pairs of electronic states in the site representation. The spectra of conformationally weighted ensembles, composed of either two or four dimers, are compared with their one-dimensional linear absorption counterparts. In order to provide a realistic coupling pattern for the ensemble consisting of four dimers, excitonic couplings are estimated on the basis of optimized geometries and site-transition dipole moments, calculated by standard semiempirical methods for the bridged bithiophene structure 1,2-bithiophene-2-yl-ethane-1,2-dion (T2[CO]2). In the framework of our model, the highly readable 2D PE spectra can unambiguously identify spectral doublets, by relating peak heights and positions with mutual orientations of site-localized transition dipoles.     

Theoretical investigations of the perylene electronic structure: Monomer,dimers, and excimers

The structural and electronic properties of perylene molecule, dimers, and excimers have been computationally studied. The present work represents the first systematic study of perylene molecule and dimer forms by means of long‐range corrected time‐dependent density functional theory (TDDFT) approaches. Initially, the study explores the photophysical properties of the molecular species. Vertical transitions to many excited singlet states have been computed and rationalized with different exchange‐correlation functionals. Differences between excitation energies are discussed and compared to the absorption spectrum of perylene in gas phase and diluted solution. De‐excitation energy from the relaxed geometry of the lowest excited singlet is in good agreement with the experimental fluorescence emission. Optimization of several coplanar forms of the perylene pair prove that, contrary to generalized gradient approximation (GGA) and hybrid exchange‐correlation functionals, corrected TDDFT is able to bind the perylene dimer in the ground state. Excitation energies from different dimer conformers point to dimer formation prior to photoexcitation. The fully relaxed excimer geometry belongs to the perfectly eclipsed conformation with D_2h symmetry. The excimer equilibrium intermolecular distance is shorter than the separation found for the ground state, which is an indication of stronger interchromophore interaction in the excimer state. Excimer de‐excitation energy is in rather good agreement with the excimer band of perylene in concentrated solution. The study also scans the energy profiles of the ground and lowest excited states along several geometrical distortions. The nature of the interactions responsible for the excimer stabilization is explored in terms of excitonic and charge resonance contributions. © 2015 Wiley Periodicals, Inc.