Effect of ring strain on the thiolate-disulfide exchange. A computational study

B3LYP/aug-cc-pVDZ and MP2/6-31+G calculations of the reactions of HS(-) with small cyclic disulfides (dithiirane, 1,2-dithietane, 1,2-dithiolane, and 1,2-dithiane) were performed to determine the reaction mechanism. For the five- and six-membered rings, the reaction proceeds via the addition-elimination pathway, consistent with acyclic analogues. The smaller, more strained three- and four-membered rings react by the S(N)2 mechanism. Addition of the nucleophile cannot be accommodated by the small rings without concomitant ring cleavage.     

Structural basis for the broad-spectrum inhibition of metallo-beta-lactamases by thiols

The development of broad-spectrum metallo-beta-lactamase (MBL) inhibitors is challenging due to structural diversity and differences in metal utilisation by these enzymes. Analysis of structural data, followed by non-denturing mass spectrometric analyses, identified thiols proposed to inhibit representative MBLs from all three sub-classes: B1, B2 and B3. Solution analyses led to the identification of broad spectrum inhibitors, including potent inhibitors of the CphA MBL (Aeromonas hydrophila). Structural studies revealed that, as observed for other B1 and B3 MBLs, inhibition of the L1 MBL thiols involves metal chelation. Evidence is reported that this is not the case for inhibition of the CphA enzyme by some thiols; the crystal structure of the CphA-Zn-inhibitor complex reveals a binding mode in which the thiol does not interact with the zinc. The structural data enabled the design and the production of further more potent inhibitors. Overall the results suggest that the development of reasonably broad-spectrum MBL inhibitors should be possible.     

Component exchange as a synthetically advantageous strategy for the preparation of bicyclic cage compounds

Macrobicyclic triphosphazides are able to reversibly exchange one of their tripodal components by means of a dynamic disassembly-reassembly process; surprisingly this strategy provides better yields of cage compounds than a direct tripod-tripod coupling.     

基于强阳离子交换色谱分离的磷酸化肽段富集策略

为了在短时间内获得相对含量高的磷酸化肽段,以标准磷酸化蛋白质为模型对强阳离子交换色谱（SCX）分离磷酸化肽段体系的缓冲溶液和梯度设置进行了研究,并用酵母酶切肽段混合物考察了该路线在较复杂的样品中的应用。实验结果表明优化后的体系能够在30 min内分离出磷酸肽段,而且非磷酸化肽段的干扰很少,这样便相对提高了磷酸化肽段在质谱仪中的响应强度,重要的是该体系可以对复杂样品进行很好的分离。这说明SCX用于规模化磷酸化肽段富集的策略是可行的。本研究为磷酸化蛋白质组学规模化分析提供了实用技术。     

Sigma stellation: a design strategy for electron boxes

The carbon-fluorine antibonding (sigma*) orbitals in a fluorocarbon cage are directed toward a central, common point. If the cage is not too large or too small, then the sigma* orbitals will overlap at that point. An added electron can occupy the resulting molecular orbital, suggesting that cage perfluorocarbons will have large electron affinities. This prediction is supported by electronic structure calculations of all of the fluorinated derivatives of tetrahedrane, cyclopropane, and cubane and of some other fluorinated cage and ring compounds. Perfluorododecahedrane (C20F20) is predicted to have an electron affinity of about 3.4 eV, which is equal to that of the fluorine atom. A few speculative extensions and applications are suggested.     

Iminoboronates: a new strategy for reversible protein modification

Protein modification has entered the limelight of chemical and biological sciences, since, by appending small molecules into proteins surfaces, fundamental biological and biophysical processes may be studied and even modulated in a physiological context. Herein we present a new strategy to modify the lysine's ε-amino group and the protein's N-terminal, based on the formation of stable iminoboronates in aqueous media. This functionality enables the stable and complete modification of these amine groups, which can be reversible upon the addition of fructose, dopamine, or glutathione. A detailed DFT study is also presented to rationalize the observed stability toward hydrolysis of the iminoboronate constructs.     

Basis set exchange: a community database for computational sciences

Basis sets are some of the most important input data for computational models in the chemistry, materials, biology, and other science domains that utilize computational quantum mechanics methods. Providing a shared, Web-accessible environment where researchers can not only download basis sets in their required format but browse the data, contribute new basis sets, and ultimately curate and manage the data as a community will facilitate growth of this resource and encourage sharing both data and knowledge. We describe the Basis Set Exchange (BSE), a Web portal that provides advanced browsing and download capabilities, facilities for contributing basis set data, and an environment that incorporates tools to foster development and interaction of communities. The BSE leverages and enables continued development of the basis set library originally assembled at the Environmental Molecular Sciences Laboratory.     

Binary ligand strategy toward interweaved encapsulation-nanotubes structured electrocatalyst for proton exchange membrane fuel cell

Hierarchically porous architecture of iron-nitrogen-carbon(Fe-N-C) for oxygen reduction reaction(ORR)is highly desired towards efficient mass transfer in the fuel cell device manner.Herein,we reported a binary ligand strategy to prepare zeolitic imidazolate frameworks(ZIFs)-derived precursors,wherein the addition of secondary ligand endows precursors with the capabilities to transform into porously interweaved encapsulation-nanotubes structured composites after calcination.The optimal catalyst,i...     

Intramolecular dimers: a new design strategy for fluorescence-quenched probes

Fluorogenic probes dual-labeled with reporter and quencher dyes use a change in fluorescence to monitor biochemical events (e.g., substrate binding or enzyme digestion). Such events change the reporter-quencher distance, which affects fluorescence. Recently, it is has been shown that static quenching through intramolecular dimers is an important mechanism that can sometimes be more efficient than F?rster resonance energy transfer (FRET).     

Omni-composites: a new strategy for forming bulk nanostructured materials

This work describes a new route for producing bulk materials from extremely high loading levels of inorganic nanoparticles, approaching 80%, while maintaining optical transparency. More specifically, LaF3 nanoparticles with trifluorovinyl ether (TFVE) ligands were synthesized. Because a single nanoparticle will have many functional ligands attached to its surface, the nanoparticles themselves act as cross-linkers, without the need for a matrix phase for the composite, promoting homogeneity and reduced optical scattering. In order to distinguish these new types of composites from traditional nanocomposites, they are referred to here as "omni"-composites because the material is composed entirely (Lat. omnino) of composite nanoparticles.     

Photocaged permeability: a new strategy for controlled drug release

Light is used to release a drug from a cell impermeable small molecule, uncloaking its cytotoxic effect on cancer cells.     

Decarboxylative coupling reactions: a modern strategy for C-C-bond formation

This critical review examines transition metal-catalyzed decarboxylative couplings that have emerged within recent years as a powerful strategy to form carbon-carbon or carbon-heteroatom bonds starting from carboxylic acids. In these reactions, C-C bonds to carboxylate groups are cleaved, and in their place, new carbon-carbon bonds are formed. Decarboxylative cross-couplings constitute advantageous alternatives to traditional cross-coupling or addition reactions involving preformed organometallic reagents. Decarboxylative reaction variants are also known for Heck reactions, direct arylation processes, and carbon-heteroatom bond forming reactions.     

A novel channel-wall engineering strategy for two-dimensional cationic covalent organic frameworks: Microwave-assisted anion exchange and enhanced carbon dioxide capture

A novel channel-wall engineering strategy of the porous materials cationic covalent organic frameworks(COFs)is established based on rapid microwave-assisted anion exchange reaction and utilized to prepare a set of new COFs.Due to the interaction between the carbon dioxide(C02)and the acetate anion,the resulting SJTU-COF-AcO shows greatly enhanced carbon dioxide capacity up to 1.7 times of the pristine COF.The effect of the counteranions to CO2 capacity in the cationic COFs is investigated for the first time,which demonstrates that our channel-wall engineering strategy is a promising way to tailor the property of COFs for high CO2 capacity.     

Discovering antimalarials: a new strategy

Recent discoveries have uncovered some key processes that occur in the food vacuole of the malarial parasite. Consequently, new families of potential antimalarials that inhibit HRP-2, a hitherto unexplored drug target, were identified using a novel screening method.     

Protein-peptide affinity determination using an H/D exchange dilution strategy: Application to antigen-antibody interactions

A new methodology using hydrogen/deuterium amide exchange (HDX) to determine the binding affinity of protein-peptide interactions is reported. The method, based on our previously established approach, protein ligand interaction by mass spectrometry, titration, and H/D exchange (PLIMSTEX) [J. Am. Chem. Soc. 2003, 125, 5252–5253], makes use of a dilution strategy (dPLIMSTEX) for HDX, using the mass of the peptide ligand as readout. We employed dPLIMSTEX to study the interaction of calcium-saturated calmodulin with the opioid peptide β-endorphin as a model system; the affinity results are in good agreement with those from traditional PLIMSTEX and with literature values obtained by using other methods. We show that the dPLIMSTEX method is feasible to quantify an antigen-antibody interaction involving a 3-nitrotyrosine modified peptide in complex with a monoclonal anti-nitrotyrosine antibody. A dissociation constant in the low nanomolar range was determined, and a binding stoichiometry of antibody/peptide of 1:2 was confirmed. In addition, we determined that the epitope in the binding interface contains a minimum of five amino acids. The dPLIMSTEX approach is a sensitive and powerful tool for the quantitative determination of peptide affinities with antibodies, complementary to conventional immuno-analytical techniques.     

Promotion of the photoacid generation performance of sulfonium salts by inhibiting the isomerization of conjugated systems using a cyclization strategy

This work describes an original structure−reactivity relationship within a series of sulfonium salts synthesized using a cyclization strategy. The new sulfonium salt comprises a stilbene subunit decorated with a combination of cyclized structure, that is, carbocyclic ring, furan ring, and thiophene ring, to inhibit the isomerization of double bond systems. The photoacid generation efficiency of such cyclized stilbene derivative sulfonium salts is mainly modulated by the five-membered ring structures and the substituent as confirmed by photodegradation, in situ nuclear magnetic resonance, and cyclic voltammetry. Such cyclization drastically regulates the population of highly reactive excited singlet species and thus enhances the photoacid generation performance of the sulfonium salts by more than one order of magnitude within the series, especially when introducing oxygen to form the benzofuran ring structure. Given this amplified photoreactivity, the application potential of the photoinitiated cationic polymerization of the sulfonium salts was evaluated at different irradiation wavelengths.     

Modular domain structure: a biomimetic strategy for advanced polymeric materials

A long lasting challenge in polymer science is to design polymers that combine desired mechanical properties such as tensile strength, fracture toughness, and elasticity into one structure. A novel biomimetic modular polymer design is reported here to address this challenge. Following the molecular mechanism used in nature, modular polymers containing multiple loops were constructed by using precise and strong hydrogen bonding units. Single-molecule force-extension experiments revealed the sequential unfolding of loops as a chain is stretched. The excellent correlation between the single-molecule and the bulk properties successfully demonstrates our biomimetic concept of using modular domain structure to achieve advanced polymer properties.     

Wavelength selection for multivariate calibration using a genetic algorithm: a novel initialization strategy

Genetic algorithms and other procedures mimicking natural processes are being increasingly used for variable selection, to improve the predictive ability of partial least-squares multivariate calibration. Two issues are critical for the success of genetic algorithms: initialization (setting the first candidates for solving the problem at hand) and overfitting (the tendency to produce excellent results when training, but poor predictions toward fresh samples). A new procedure is presented for sensor selection problems, involving iterative reinitialization based on a statistical analysis of the included sensors. It is shown to give excellent results without the requirement of preparing independent test data sets. Monte Carlo simulations using a theoretical three-component example illustrate how partial least-squares regression greatly benefits from variable selection when the analyte of interest is diluted, and how the new initialization method compares with other strategies. The new genetic algorithm was applied to five experimental data sets. The target parameters were the concentrations of diluted analytes in four pharmaceutical mixtures studied by UV-visible spectrophotometry and the octane number in gasolines analyzed by near-infrared spectroscopy.