Enhanced ligand affinity for receptors in which components of the binding site are independently mobile

Using calmodulin antagonism as a model, it is demonstrated that, under circumstances in which binding sites are motionally independent, it is possible to create bifunctional ligands that bind with significant affinity enhancement over their monofunctional counterparts. Suitable head groups were identified by using a semiquantitative screen of monofunctional tryptophan analogs. Two bifunctional ligands, which contained two copies of the highest-affinity head group tethered by rigid linkers, were synthesized. The bifunctional ligands bound to calmodulin with a stoichiometry of 1:1 and with an affinity enhancement over their monofunctional counterparts; the latter bound with a stoichiometry of 2:1 ligand:protein. A lower limit to the effective concentrations of the domains of calmodulin relative to each other (0.2-2 mM) was determined. A comparable effective concentration was achieved for bifunctional ligands based on higher-affinity naphthalene sulphonamide derivatives.     

双功能有机小分子模拟酯酶研究

设计并合成了3个含有硫脲和咪唑基团的双功能有机小分子催化剂, 运用紫外光谱研究了它们对乙酸对硝基苯酯(PNPA)水解的催化活性. 考察了不同的pH条件下, 催化速率常数的变化情况. 发现与硫脲单功能催化剂相比, 双功能有机小分子催化剂具有更高的催化活性.     

Prodrugs of 2',3'-dideoxyinosine (DDI): improved oral bioavailability via hydrophobic esters.

Five ester prodrugs of 2'3'-dideoxyinosine (DDI) were synthesized for the purpose of improving oral bioavailability. The prodrugs, acetate (C2-DDI), octanoate (C8-DDI), stearate (C18-DDI), benzoate (Bz-DDI), and hemisuccinate (Suc-DDI) were proved to quantitatively regenerate their parent drug by enzymatic hydrolysis. Though the chemical stability of the prodrugs under acidic conditions was not improved, their solubility in water was significantly decreased by esterification, except for Suc-DDI. Bioavailability was evaluated by oral administration to rats. Two hydrophobic prodrugs (C8-DDI and Bz-DDI) showed higher absolute bioavailability (23.5% and 31.0%, respectively) than did DDI (15.2%), though that of C2-DDI (11.5%) and Suc-DDI (4.5%) was poor.     

Prodrugs of 9-benzyl-8-hydroxy-2-(2-hydroxyethylthio)adenine: potent interferon inducing agents in monkeys

In order to improve the oral bioavailability of 9-benzyl-8-hydroxy-2-(2-hydroxyethylthio)adenine (SM-295072), a potent interferon (IFN) inducing agent, we synthesized prodrugs of it by utilizing the hydroxy groups at the C(2)-side chain and/or the C(8)-position. The carbonate prodrug at the C(8)-position was more effective than that at the C(2)-side chain for oral absorption in rats. Among the compounds prepared, compound 6 demonstrated the most preferable prodrug properties, and the maximum plasma concentration of 6 was approximately 4-fold higher than that of SM-295072. Furthermore, compound 6 was dose-dependently absorbed in monkeys by oral administration, and exhibited a potent IFN-inducting activity that correlated well with its plasma drug concentration.     

Synthesis of 4-functionalized terdendate pyridine-based ligands

Four different 4-functionalised pyridine-based ligands were synthesized with aminomethyl, oxazolinyl, pyrazolyl and methylimidazolyl groups at the 2- and 6-position. The nitrogens of these groups together with the pyridine nitrogen can act as terdendate ligands for metal ions. Synthetic handles on the 4-position of the pyridine group were introduced via ether or ester bonds leading to monofunctional, bifunctional and amphiphilic ligands.     

Synthese von substituierten Pyridiniumsalzen

Derivatives of bis-pyridinium salts—new bifunctional pyridinium perchlorates and monofunctional pyridinium-salts derived from sulfonamides and heterocyclic systems—were synthesized by reaction of pyrylium salts with diamines or monoamino-heterocycles.     

HERPES VIRUS PRODUCTION IN MONKEY KIDNEY AND HUMAN SKIN CELLS TREATED WITH ANGELICIN OR 8-METHOXYPSORALEN PLUS 365 nm LIGHT

Abstract—At an cquimolar concentration of 50 μM the bifunctional furocoumarin, 8-methoxypsoralen (8-MOP), is about 36 times more efficient in inhibiting the colony forming ability of CV-I monkey kidney cells than the monofunctional furocoumarin angelicin. In contrast 8-MOP is only 7.5 times more efficient than angelicin for the inhibition of herpes simplex virus (HSV) production in CV-1 cells. This latter factor seems to reflect differences in photoreactivity of the two compounds with host cell DNA.
A substantial recovery of HSV production was seen when cells were infected at different time intervals after treatment with angelicin-plus-light, whereas recovery was very limited after 8-MOP plus light treatment. The recovery process was slow as compared to that observed after UV (254 nm)-irradiation.
The repair capacities of treated normal and xeroderma pigmentosum (group A) skin fibroblasts were estimated by measuring HSV production and unscheduled DNA synthesis. XP-A cells repaired angelicin induced damage less efficiently than did normal cells. Neither cell type showed any repair activity after 8-MOP plus light treatment.     

Bifunctional and monofunctional catalysis in the CNDO/2 approximation: Formamidine acid-base and base catalysed 1,3-proton transfers in propene

The bifunctional acid-base and monofunctional base catalysis by formamidine of 1,3-proton transfer reactions in propene has been studied with the CNDO/2 MO-method. Energy profiles for both types of catalysis were studied, and no reaction intermediate was found in either case. In agreement with orbital correlation considerations, bifunctional catalysis is preferred over monofunctional catalysis. Comparison is made with another reaction in which simultaneous transfer of two protons occurs. The mechanism of bifunctional monofunctional catalysis is discussed.     

Synthesis of Poly(Styrene)-block-poly(methacrylate)-block-poly(styrene) via Site Transformation Reaction

Abstract

Triblock copolymers with polystyrene outer blocks and an inner polymethacrylate block were synthesized by a site transformation reaction using anionic and cationic polymerization techniques. In order to obtain such ABA block copolymers, two synthetic routes have been applied. In the first case, different methacrylates (methyl methacrylate, 2-ethylhexyl methacrylate) were polymerized anionically with a bifunctional initiator to get poly(methacrylate) dianions later forming the inner block whereas in the second case poly(styrene)-block-poly(methacrylate) anions were synthesized by monofunctional initiation via sequential monomer addition. In a subsequent step, the living chain ends of the methacrylate dianions on one side, and the diblock copolymer anions on the other side, were functionalized with 1,4-bis(l-bromoethyl)benzene in order to obtain a potential bifunctional or monofunctional macroinitiator for the cationic polymerization of styrene. Then, styrene was polymerized cationically with the macroinitiator in the presence of SnCl₄ as coinitiator and _n Bu₄NBr as a common ion salt in CH₂Cl₂ at -15°C. Block formation was proven by SEC measurements, preparative SEC and NMR characterization.     

Enhanced absorption and growth inhibition with amino acid monoester prodrugs of floxuridine by targeting hPEPT1 transporters

A series of amino acid monoester prodrugs of floxuridine was synthesized and evaluated for the improvement of oral bioavailability and the feasibility of target drug delivery via oligopeptide transporters. All floxuridine 5'-amino acid monoester prodrugs exhibited PEPT1 affinity, with inhibition coefficients of Gly-Sar uptake (IC50) ranging from 0.7 - 2.3 mM in Caco-2 and 2.0 - 4.8 mM in AsPC-1 cells, while that of floxuridine was 7.3 mM and 6.3 mM, respectively. Caco-2 membrane permeabilities of floxuridine prodrugs (1.01 - 5.31 x 10(-6 )cm/sec) and floxuridine (0.48 x 10(-6 )cm/sec) were much higher than that of 5-FU (0.038 x 10(-6) cm/sec). MDCK cells stably transfected with the human oligopeptide transporter PEPT1 (MDCK/hPEPT1) exhibited enhanced cell growth inhibition in the presence of the prodrugs. This prodrug strategy offers great potential, not only for increased drug absorption but also for improved tumor selectivity and drug efficacy.     

Amplification of bifunctional ligands for calmodulin from a dynamic combinatorial library

A well known strategy to prepare high affinity ligands for a biological receptor is to link together low affinity ligands. DCC (dynamic combinatorial chemistry) was used to select bifunctional protein ligands with high affinity relative to the corresponding monofunctional ligands. Thiol to disulfide linkage generated a small dynamic library of bifunctional ligands in the presence of calmodulin, a protein with two independently mobile domains. The binding constant of the bifunctional ligand (disulfide) most amplified by the presence of calmodulin is nearly two orders of magnitude higher than that of the corresponding monofunctional ligand (thiol).     

Studies on penem and carbapenem. I. Syntheses and oral absorption of ester-type prodrugs of sodium (5R,6S)-2-(2-fluoroethylthio)-6-[(1R)-1-hydroxyethyl]penem-3-c arboxylat e

Acyloxyalkyl esters (2a-d), alkyloxycarbonyloxyalkyl esters (2e-g) and (5-methyl-2-oxo-1,3-dioxol-4-yl)methyl ester (2h) of (5R,6S)-2-(2-fluoroethylthio)-6-[(1R)-1-hydroxyethyl]penem-3- carboxylic acid (1) were synthesized. Enhanced oral absorption was observed in mice reflecting increased lipophilicity, compared with the parent 1 itself. Among them, the ester 2h showed a prolonged plasma level and a large area under the blood concentration-time curve (AUC) in rats. These ester-type prodrugs of penem 1 in phosphate buffer (pH 6.86) were much more stable than those of cephalosporins which easily degraded via isomerization to delta 2 cephalosporins.     

Monte Carlo study of supramolecular polymer fractionation: selective removal of chain stoppers by phase separation

Supramolecular polymers consist of bifunctional monomers that join and break reversibly. Supramolecular polymer solutions are often polluted by monofunctional contaminants, which drastically reduce the chain-forming capabilities of the system. Unfortunately, the monofunctional contaminants are difficult to remove due to the physical and chemical resemblance with the bifunctional counterparts. In this paper, we present a method to specifically remove the monofunctional contaminants from a supramolecular polymer solution. The general idea is to induce phase separation by decreasing the solvent quality and to remove the most dilute phase. This concept is explored by means of a recently developed Monte Carlo scheme to calculate the compositions of the coexisting liquid phases. The simulations provide a proof of principle that the proposed purification method is suitable to remove the monofunctional contaminants efficiently. The calculations indicate that, at the right experimental conditions, the vast majority of the monofunctional contaminants can be removed in this way while retaining most of the bifunctional monomers. Because of the general nature of the arguments presented here, it is to be expected that the results are applicable to a large variety of supramolecular systems. Moreover, the method is very suitable for large-scale applications because only solvent is added and no tedious chromatographic steps are required.     

Preparation and reactivity of a primary amino group attached to the centre of a polymethylene chain

Polymethylenes with different chain lengths and having a central primary amino group were prepared. Rates of the reaction of the amines with 1,5-naphthalenedisulphonyl dichloride, a bifunctional fluorescent reagent, were measured by fluorometry in dilute solution. The rate constants obtained are equivalent to those for the reaction of two chain molecules having a functional group at each centre. Rates of the reactions of the amines with 5-dimethylamino-1-naphthalenesulphonyl chloride (a monofunctional fluorescent reagent), i.e. the reactions between a low molecular weight species and a functional group at the centre of a chain molecule, were also measured. Effects of chain length on reactivity of the central functional group, e.g. “local solvent medium effect” and “kinetic excluded volume effect,” are discussed briefly.     

Mass spectrometry of cis-diamminedichloroplatinum(II) adducts with the dinucleosidemonophosphates d(ApG), d(GpG) and d(TpC) in an ion trap

The detection and fragmentation behaviour of adducts of the chemotherapeutic cis-diamminedichloroplatinum(II) (cisplatin) with the dinucleosidemonophosphates d(ApG), d(GpG) and d(TpC) as model compounds for DNA adducts in an ion trap with electrospray ionization were studied. Mainly the monofunctional adduct, the bifunctional adduct and the bifunctional adduct with platinum bridging two dinucleosidemonophosphates were detected. In addition, several more complex adducts were seen resulting from reactions among these species. Adduct formation was low in the case of d(TpC). Fragmentation could be controlled strongly by varying the temperature of the transfer capillary; furthermore, tandem mass spectrometric (MS/MS) experiments on both the monofunctional and the bifunctional adducts were performed. For the adducts of d(ApG) and d(GpG) losses of NH(3) and HCl were the most dominant reactions, followed by the losses of one, then another two units of 98 amu from the sugar-phosphate backbone, whereas d(TpC)-Pt predominantly forms the dinucleosidemonophosphate. In the gas phase, the conversion of the monofunctional into the bifunctional adducts through binding to another site in the dinucleotide accompanied by loss of NH(3) or HCl could also be observed. The removal of a ligand from the coordination sphere of the square-planar platinum complexes appeared to be the crucial step for the induction of further fragmentation of the dinucleotide ligand. MS(n) experiments of the bifunctional adducts of d(ApG) and d(GpG) revealed different fragmentation pathways involving the loss of phosphoric acid, metaphosphoric acid, deoxyribose units (intact or dehydrated) and the nucleobases in different orders, leaving characteristic binding site-determining fragments. Fragmentation of these ions was also performed, mainly resulting in fragmentation of the bases. The study confirmed the remarkable stability of the platinum-guanine bond compared with other nucleobases.     

Studies on absorption, distribution, excretion and metabolism of ginseng saponins. VIII. Isotope labeling of ginsenoside Rb2.

To clarify the pharmacokinetics of absorption, distribution and excretion of ginsenoside Rb2 (Rb2), one of the major saponins of the root of Panax ginseng, following oral administration to rats, a tritium (3H) labeling of Rb2 was examined. The C-12 position of Rb2 was labeled with 3H-sodium borohydride (3H-NaBH4) and 12-3H Rb2 and 12-3H-epi Rb2 was synthesized. This method of specific position labeling of Rb2 may be applicable to other ginsenosides. In the near future, the pharmacokinetics of Rb2 in rats may be clarified with 3H labeled Rb2.     

含平面胺配体的反式二价钯配合物与DNA碱基的作用

含大的平面胺配体的二价钯金属配合物在当前的抗肿瘤药物设计中代表着一类具有重要发展前途的先导结构. 由于大的平面胺配体具有较大的空间位阻, 目前主要的问题是这类化合物能否和DNA碱基结合形成单功能和双功能加合物. 我们采用密度泛函理论和等电聚焦连续极化(IEF-PCM)溶剂化模型研究了trans-PdCl2L2(L:2-羟基吡啶)的钯配合物与DNA碱基的作用. 该化合物与DNA形成单功能和双功能加合物反应的活化自由能均低于铂类抗肿瘤药. 所有反应在水溶液中均为放热反应. 结果表明, 这一大的平面胺配体不会阻碍该化合物与DNA碱基形成双功能加合物, 而且该化合物与DNA的单功能和双功能结合的速率会大于铂类化合物.     

Atom-transfer radical polymerization of styrene with bifunctional and monofunctional initiators: Experimental and mathematical modeling results

Bulk atom transfer radical polymerization (ATRP) of styrene was carried out at 110 °C using benzal bromide as bifunctional initiator and 1-bromoethyl benzene as monofunctional initiator. CuBr/2,2′-bipyridyl was used as the ATRP catalyst. The polymerization kinetic data for styrene with both initiators was measured and compared with a mathematical model based on the method of moments and another one using Monte Carlo simulation. An empirical correlation was incorporated into the model to account for diffusion-controlled termination reactions. Both models can predict monomer conversion, polymer molecular weight averages, and polydispersity index. In addition, the Monte Carlo model can also predict the full molecular weight distribution of the polymer. Our experimental results agree with our model predictions that bifunctional initiators can produce polymers with higher molecular weights and narrower molecular weight distributions than monofunctional initiators. © 2007 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 45: 2212–2224, 2007     

Solid-phase extraction for the simultaneous preconcentration of organic (selenocystine) and inorganic [Se(IV), Se(VI)] selenium in natural waters

The recombinantly produced different forms of protein G, namely monofunctional immunoglobulin G (IgG) binding, monofunctional serum albumin (SA) binding and bifunctional IgG/SA binding proteins G, are compared with respect to their specific affinities to blood IgG and SA. The affinity mode of the recently developed high-performance monolithic disk chromatography has been used for fast quantitative investigations. Using single affinity disks as well as two discs stacked into one separation unit, one order of magnitude in adsorption capacities for IgG and SA were found both for monofunctional and bifunctional protein G forms used as specific affinity ligands. However, despite the adsorption difference observed, the measured dissociation constants of the affinity complexes seemed to be very close. The analytical procedure developed can be realized within a couple of minutes. Up-scaling of the developed technology was carried out using another type of monolithic materials, i.e. CIM affinity tubes.     

A new simple synthesis of soluble high molecular weight polyphenylenes by the cotrimerization of mono- and bifunctional terminal acetylenes

The monofunctional acetylenes, phenylacetylene and m-ethynyltoluene, were each copolymerized with diethynylbenzene in a 1:1 mole ratio by using TiCl₄/3AlEt₂Cl as cyclotrimerization catalyst. The aromatic polymers which were produced were polydisperse with a molecular weight of ～10,000. Variation of catalyst concentration had no effect on the molecular weight profile. An excess of bifunctional acetylene produced some insoluble gel but when some of the monofunctional acetylene was withheld and added only after an initial molecular weight build-up by the excess bifunctional acetylene, soluble polymers with molecular weights of approximately 50,000 were obtained in high yield, provided the overall ratio of mono- to bifunctional acetylene was maintained at 1:1. The resulting polyphenylenes were highly soluble in benzene and chlorinated solvents but gave brittle films. This was attributed to a highly branched structure resulting from a lack of specificity by the catalyst. Thermogravimetric analysis showed the polymers to have high thermal stability.