Acetyl substitution of the cyclopentadienyl ligand in molybdenum complexes; nucleophilic additions to coordinated allyl groups

An unusual acetyl substitution of the cyclopentadienyl ligand is observed during the synthesis of allyl(η⁵-Cp)Mo(CO)₂ (I) be nucleophilic displacement on Cl(allyl)Mo(CO)₂(NCMe)₂ with lithiocyclopentadiene according to Hayter. The origin of the acetyl group is established by deuterium labelling studies, and it is rationalized in terms of the activation of the coordinated acetonitrile to nucleophilic addition with LiCp. The X-ray crystal structure of (η⁵-AcCp)Mo(CO)₂(η³-allyl) (II) reveals a slightly distorted cyclopentadienyl ring and an effective enlargement (i.e., expanded locus) of the ligand as a result of acetyl substitution. The stereoelectronic consequences of the substituted cyclopentadienyl ligand (η⁵-AcCp) are found in the relative populations of the exo- and endo-conformations of the coordinated allyl ligands in both II as well as in its derived cation IV (η⁵-AcCp)Mo(CO)(NO)(η³-allyl)⁺ by comparison with their unsubstituted analogues I and III, respectively. The stereochemistry resulting from this steric change is also examined in the course of nucleophilic additions to the cationic allyl complexes IV with hydride, thiolate anions and carbanions.     

Methylation reaction for four DNA base molecules by methanediazonium ions

The methylation reactions at ten nucleophilic sites in four DNA base molecules with methanediazonium ions (CH₃N₂ ⁺) have been theoretically investigated including solvent effects at the B3LYP/6-31G^** and MP2/6-31G^** levels. The results show that all the methylation reactions have relatively small activation energy (<33.5 kJ/mol), and the methylation process is exothermic reaction and easy to occur. This study shows that the ultimate carcinogen CH₃N₂ ⁺ by NDMA can easily methylate DNA base molecules and form carcinogenic products. Supported by the Shanghai Municipal Education Commission (Grant No. YYY-07015) and Shanghai Institute of Technology (Grant No. YJ2007-36)     

Stereoselective aziridination of imines via ammonium ylides: A molecular electron density theory study

The highly trans-stereoselective reaction of ammonium salt ( AS 2 ) toward (E)-N-benzylidene-4-methylbenzenesulfonamide ( IM 4 ) in the presence of Na₂CO₃ leading to an aziridine derivative, trans -Az 6 , was theoretically studied using Molecular Electron Density Theory (MEDT) at the B3LYP/6-31G(d) computational level to probe energy transformation, selectivities, and molecular mechanism. The reaction starts by a nucleophilic substitution reaction between 1,4-diazabicyclo [2.2.2]octane ( DABCO ) and phenacyl bromide ( PB ) to form AS 2 which undergoes a proton abstraction by Na₂CO₃ to produce Ammonium Ylide ( AY 3) . Subsequently, nucleophilic addition of AY 3 to the double bond in IM 4 leads to form a betaine-like intermediate, namely, IN-Ta which named IN-Ta . Finally, trans -Az 6 is produced as a result of the nucleophilic attack of the negatively charged nitrogen atom on the carbon atom bearing DABCO in IN-Ta . Analysis of the relative Gibbs free energies shows that the ring closure step is the rate-determining step (RDS). By an investigation of the conceptual density functional theory, CDFT reactivity indices AY 3 and IM 4 are classified as a strong nucleophilic molecular system and as a strong electrophilic molecular system, respectively, which implies that the addition step of AY 3 to IM 4 has a high polar character. An analysis of the calculated electrophilic and nucleophilic Parr functions at the reactive sites of reagents clarifies the regioselectivity observed experimentally within the C₁–C₂ bond creation process.     

Synthesis and some reactions of the stable vinyl cation stabilized by the 3-η5-cyclopentadienyl-η5-(3)-1,2-dicarbollyliron(II)-1 group

An individual vinyl cation in the form of a zwitterion stabilized by the 3-η⁵-C₅H₅Fe¹¹-η⁵-(3)-1,2-C₂B₉$\text{H}$₁₀-1 group has been produced for the first time, and its reactions with nucleophilic agents have been studied. Deprotonation yielding an acetylene derivative is the main reaction in the interaction of the vinyl cation with MeLi, NaBH₄ and C₅H₅N.     

Synthesis of pyrazolide-bridged heterometallic binuclear complexes

A convenient synthetic procedure is described for the synthesis of heteronuclear bimetallic complexes involving platinum and one other group VIII metal with a single bridging pyrazolide group. The reagent used is the nucleophilic anion, trans-[Pt(Cl₂)(pz)(C₂H₄)]^-, (pz  C₃H₃N₂^-) generated in situ by deprotonation of the Zeise's adduct of pyrazole which will react with reasonably labile substrates to yield binuclear products. Spectroscopic and chemical properties of the products are discussed.     

Synthesis of new conducting poly(2,5-thienylene)s containing alkylhydroxy and alkylester side chains

The chemical synthesis of new electroconducting poly(2,5-thienylene)s containing alkylhydroxy and alkylester side-chains in the β-position of the thiophene rings is reported. The polymers were obtained by oxidative homopolymerization or copolymerization of 2-(3-thienyl)ethanol and 2-(3-thienyl)ethyl hexanoate by FeCl₃ in nitromethane. Structural characterization using elemental analysis, FT-IR and NMR spectroscopy shows that a partial nucleophilic substitution of the hydroxy group by chlorine and a partial cleavage of the ester function take place during polymerization. The presence of the ester function with a long aliphatic chain makes the polymers soluble and allows them to be processed into films. The polymers can be doped using a solution of FeCl₃ to the maximum electrical conductivity of 10⁻³ Ω⁻¹ cm⁻¹.     

Nucleophilic ligand substitution in triply deprotonated tetrapeptide complexes of copper(II) and nickel(II) with 1,10-phenanthroline and 2,2-bipyridine

Ligand substitution of the triply deprotonated tetrapeptide ligand with bulky α-carbon substituents, in the tetrapeptide complexes of Cu(II) and Ni(II) by the bidentate ligands 2,2-bipyridine and 1,10-phenanthroline has been studied. The mechanism in the Cu^II(H_-3A₄)^2? and the Cu^II(H_-3F₄)^2? complexes shows a proton-assisted nucleophilic attack, and the Cu^II(H_-3V₄)^2? shows both proton-assisted and direct equatorial nucleophilic attack by the bidentate ligands. A factor of ten decrease in the rate of substitution from Cu^II(H_-3A₄)^2? to Cu^II(H_-3V₄)^2?, and also Cu^II(H_-3F₄)^2? is an indication of a steric hindrance on the substitution rate because of atom overcrowding due to the size of the α-carbon substituents in the Cu^II(H_-3V₄)^2? and Cu^II(H_-3F₄)^2? complexes. The substitution of the triply deprotonated tetrapeptide ligand in Ni^II(H_-3A₄)^2? by 2,2-bipyridine and 1,10-phenanthroline shows a kinetic behaviour completely different to that of the Cu(II)-tetrapeptide complexes. Only a direct equatorial nucleophilic attack by the bidentate ligands has been observed.     

Nucleophilic substitution at phosphorus: stereochemistry and mechanisms

This review is devoted to the stereochemistry of nucleophilic substitution reactions at phosphorus. The study of the reactions of phosphoryl group transfer is important for biological and molecular chemistry. The stereochemistry and mechanisms of S_N1(P) monomolecular and S_N2(P) bimolecular nucleophilic substitution reactions of organophosphorus compounds are discussed. It has been shown that hydrolysis of many natural phosphates proceeds according to the monomolecular S_N1(P) mechanism via the formation of metaphosphate intermediate (PO₃^?). S_N2(P) nucleophilic substitution at chiral trivalent or pentavalent phosphorus compounds proceeds via the formation of penta-coordinated transition state or pentacoordinate intermediate.     

Decarboxylative nucleophilic difluoromethylation of aldehydes and imines

The high demand for the biologically active CF₂H-molecules has stimulated significant efforts to develop efficient methods for the installation of CF₂H functionality. We found that phenylsulfonyl difluoroacetate salt (PhSO₂CF₂CO₂^? K⁺) could directly undergo decarboxylation under warming conditions to produce active anion (PhSO₂CF₂^?) without the need of any base or additive, thus allowing for the subsequent nucleophilic (phenylsulfonyl)difluoromethylation of aldehydes or imines to give PhSO₂CF₂-alcohols or -amines, respectively. Interestingly, the removal of PhSO₂ group was achieved simply by elevating the reaction temperature for the conversion of aldehydes to afford CF₂H-ketones.     

Synthesis and conformational properties of 2′-deoxy-2′-methylthio-pyrimidine and -purine nucleosides: Potential antisense applications

A convenient and shorter synthesis of 2′-deoxy-2′-methylthiouridine analogs 5 , ?5-methyluridine 6 , -cyti-dine 15 , ?5-methylcytidine 16 , -adenosine 27 and -guanosine 34 was accomplished. Successful conversion of ribonucleosides (5-methyl U, U, A, G) into the corresponding 2′-substituted nucleosides involves nucleophilic displacement (S_N2) of an appropriate leaving group at the 2′-position by methanethiol, a soft nucleophile. Reaction between 2,2′-anhydrouridine and methanethiol in the presence of N¹,N¹,N³,N³-tetramethylguani-dine in N,N-dimethylformamide gave 5 , in 75% yield. Preparation of 6 by a similar route was described. Acylated 5 and 6 were transformed into their triazole derivatives, which on ammonolysis furnished 15 and 16 , respectively in good yield. Similarly, tetraisopropyldisiloxanyl (TIPS) protected 2′-O-aratriflates- of-adenosine and -guanosine reacted with methanethiol in the presence of 1,8-diazabicyclo[5.4.0]undec-7-ene at - 25°, followed by deblocking of the TIPS protecting group furnished 27 and 34 , respectively. The confor-mational flexibility (N/S equilibrium) of the sugar moiety in nucleosides 5 , 15 , 27 and 34 was studied utilizing nmr spectroscopy, suggesting that the 2′-methylthio group influenced the sugar conformation to adopt a rigid S-pucker in all cases. The extra stiffness of the sugar moiety in these analogs is believed to be due to the electronegativity of the substituent and the steric bulk. The usefulness of these nucleosides to prepare uniformly modified 2′-deoxy-2′-methylthio oligonucleotides for antisense therapeutics is proposed.     

Reactions of 4-acyl-1-alkoxyaryl-5-aryl-3-hydroxy-2,5-dihydro-1H-pyrrol-2-ones with nucleophilic reagents

4-Acetyl-1-alkoxyaryl-5-aryl-3-hydroxy-2,5-dihydro-1H-pyrrol-2-ones reacted with amines to give 1-alkoxyaryl-5-aryl-4-(1-R-aminoethylidene)pyrrolidine-2,3-diones. Reactions of amines with 4-benzoyl-substituted analogs involve nucleophilic attack on the C³ atom in the heteroring to produce the corresponding 3-R-amino-1-alkoxyaryl-5-aryl-4-benzoyl-2,5-dihydro-1H-pyrrol-2-ones. Reactions of the title compounds with hydrazine hydrate, regardless on the substituent on C₄, afforded 4-aryl-3-methyl(phenyl)-5-[2(4)-methoxyphenyl]-4,6-dihydropyrrolo[3,4-c]pyrazol-6-ones.     

Poly(ether sulfone)s using a rigid dibenzothiophene dioxide heterocycle

Poly(aryl ether)s were prepared by nucleophilic aromatic substitution using conformationally restricted dichloro‐ and difluorodibenzothiophene dioxide heterocyclic monomers with bisphenol A or bisphenol AF. The heterocyclic monomers were prepared from the bis(4‐halophenyl) sulfones in two steps via lithiation followed by copper catalyzed intramolecular coupling and characterized by ¹H, ¹³C, ¹⁹F NMR spectroscopy and GC/MS. Reactivity of the fluorine containing monomer was examined using semi‐empirical methods and NMR spectroscopy measurements and found to be potentially more reactive than bis(4‐fluorophenyl) sulfone, even with a conformationally locked sulfone as the electron withdrawing group. Successful polymerizations of both the fluorine and chlorine containing monomers with bisphenol A and bisphenol AF nucleophiles were accomplished, providing polymers with number average molecular weights of approximately 45 kg/mol (difluoro monomer) and 10–20 kg/mol (dichloro monomer). The polymers exhibited high T_gs ranging from 238 to 256 °C and displayed good thermal stability with 5% degradation temperatures in air from 453–510 °C, depending on molecular weight and bisphenol composition. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2016 , 54, 3127–3131     

Tetrazoloazines. 15N nuclear magnetic resonance and infrared absorption spectroscopy

The reaction of 4-chloro-2-phenylquinazoline with K¹⁵NN₂ has been studied by ¹⁵N-NMR. spectroscopy. ¹⁵N-chemical shifts in 5-phenyl-1 (3)-[¹⁵N]-tetrazolo[1,5-c]quinazoline and -Nα(Nγ)-[¹⁵N]-4-azido-2-phenylquinazoline are reported. The characteristic IR. absorption frequencies of the tetrazole group have been determined in a series of annelated ¹⁵N-labelled compounds. From these studies and the chemistry of the labelled tetrazoles, it is concluded that all haloazines examined react with KN₃ by the direct nucleophilic substitution mechanism. An addition of nucleophile-ring opening-ring closure (ANRORC) mechanism was not observed. The synthesis of several ¹⁵N-labelled tetrazoloazines is described.     

Synthesis and X-ray structure of methyl esters of the dicarboxyphenylsulfide iron(II) clathrochelates

All six constitutional isomers of the dimethoxy-terminated clathrochelate FeBd₂((CH₃OOCC₆H₄S)₂Gm)(BF)₂ (where Bd^2? is α-benzildioxime dianion, Gm is glyoxime residue, and BF is fluoroboron capping group) were obtained under mild reaction conditions by nucleophilic substitution of their dichloroclathrochelate precursor with the corresponding methyl ester of carboxyphenylthiolate anion generated in situ in the presence of triethylamine. In the case of homodifunctionalized cage complexes with equivalent ortho-, meta-, or para-substituted arylsulfide groups, 1.5-fold excess of methyl ester of the corresponding mercaptobenzoic acid was added. In the case of their heterodifunctionalized macrobicyclic analogs, subsequent addition of one equivalent of the first nucleophilic agent and one equivalent of the second nucleophile was used. The complexes were characterized using elemental analysis, MALDI-TOF mass spectrometry, IR, UV–vis, ¹H and ¹³C{¹H} NMR spectra, and by single-crystal X-ray diffraction. In all these molecules, the encapsulated iron(II) is situated in the center of FeN₆-coordination polyhedron, the geometry of which is intermediate between a trigonal prism and a trigonal antiprism with the average distortion angles φ from 24.7 to 25.2°. The absence of strong intermolecular interactions and the substantial sterical clashes hampering a rotation around the single C–S bonds, resulted in different orientations of the functionalizing arylsulfide substituents at a cage framework.     

Action de nucléophiles simples sur un bromoénurononitrile,précurseur et équivalent synthétique partiel d'un ynurononitrile

Reactions of Mononucleophiles with a Bromoenurononitrile, Precursor and Partial Synthetic Equivalent of an Ynurononitrile Several mononucleophiles (bases) have been reacted with one or the other of the geometrical isomers of the bromoenurononitrile 1. Depending on the nucleophile and the conditions, many different mechanistic pathways were followed, f. ex.: with OH^?, stereospecific elimination from (Z)- 1 leading to 2 , with N^?₃ and F^?, stereospecific E-A_N reactions leading from (Z)- 1 to (Z)- 8 and (Z)- 12 respectively, with PhCH₂SH, conjugate nucleophilic addition to 7, with Me₂NH, conjugate nucleophilic addition followed by a S_N2 to 11 , as well as several cases of nonstereoselective, probably A_N-E, reactions leading to 3,6,9 and 10. In spite of their diversified reactivity, bromoenurononitriles like 1 , partial synthetic equivalent of 2 , constitute useful synthetic intermediates.     

Regio- and Stereocontrolled Nucleophilic Addition Reactions of An Unsymmetrically Disbustituted Butadiene η4-Molybdenum Cationic Complex

The reactions of a new cationic complex, [Cp(CO)₂Mo(η⁴-2-methyl-3-SPh-C₄H₄)]⁺ PF^?₆ (3), with carbon, hydride, and nitrogen nucleophiles were found to give only the C-1 addition products in good yield. The X-ray crystal structures of two of the addition products 4a and 4e confirm the regio- and stereochemistry of the nucleophilic additions.     

Amine catalysis in phosphoryl transfer from 2,4-dinitrophenyl phosphate in aprotic and protic solvents

Reactions of tetra-n-butylammonium 2,4-dinitrophenyl hydrogen phosphate, (ArPH)^?(R₄N)⁺, in aprotic and protic solvents, in the absence and in the presence of alcohols or water, ROH, are compared with analogous reactions of the salt in the presence of hindered and unhindered amines, e.g. diisopropylethyl amine and quinuclidine. Similar studies are performed with the acid, ArPH₂, in the presence of variable amounts of amines. The release of phenol and the fate of the phosphorus compounds are followed by ¹H and ³¹P NMR spectrometry. In the absence of free unhindered amine, reactions of the monoanion are relatively slow, sensitive to steric hindrance in the alcohol, and incapable of producing t-butyl phosphate from t-butanol; reactions of the dianion are relatively fast, insensitive to steric hindrance in the alcohol, and produce t-butyl phosphate. In the presence of free unhindered amine, reactions of the monoanion are relatively fast but still sensitive to steric hindrance in the alcohol, and hence do not produce t-butyl phosphate. The intermediate CH(CH₂CH₂)₃⁺NP(O)(OH)O^? is detected in the presence of quinuclidine. Reactions of the dianion in the presence of unhindered amines are analogous to those observed in the presence of hindered amines. The uncatalyzed and the nucleophilic amine-catalyzed reactions of the monoanion are assumed to proceed via oxyphosphorane, P(5), intermediates. The dianion reactions, which are not susceptible to nucleophilic catalysis, are assumed to proceed via the monomeric metaphosphate ion intermediate, PO₃^?. Significant effects related to solvent properties are observed in these reactions.     

Structure–reactivity relationships and the rate–determining step in the reactions of methyl salicylate with primary amines

The aqueous cleavage of methyl salicylate has been studied in the buffer solutions of various primary mono- and di-amines as well as secondary amines at 30°C. Both ionized (MS^?) and nonionized (MSH) methyl salicylate are reactive toward primary mono- and di-amines. The second-order rate constants for the reactions of MS^? with primary mono- and di-amines of pK_a > 9.4 exhibit Bronsted plot of slope (β_nuc) of 0.82. This high value of β_nuc is attributed to an intramolecular proton transfer in a thermodynamically unfavorable direction in the rate-determining step in a stepwise process for the formation of monoanionic tetrahedral intermediate. However, a concerted process for the formation of a monoanionic tetrahedral intermediate in the reactions of MS^? with amine nucleophiles wherein expulsion of leaving group is a rate-determining step is not completely ruled out. The α-effect nitrogen nucleophiles hydroxylamine and hydrazine reveal, respectively, ca. 10⁴- and 10³-fold higher reactivity compared to other amine nucleophiles of comparable basicity. The value of β_nuc of 1.03 obtained for the reactions of primary monoamines with MSH is ascribed to the expulsion of leaving group as the rate-determining step. The significantly lower value of β_nuc of 0.60 obtained in the reactions of MSH with both monoprotonated and unprotonated diamines is explained in terms of possible occurrence of intramolecular general acid-base catalysis. Intramolecular general base catalysis is responsible for the enhanced nucleophilic reactivity of primary amines toward MS^?. Dimethylamine, piperidine, morpholine, and piperazine have no detectable nucleophilic reactivity toward MS^?.     

19F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis

Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use ¹⁹F NMR chemical shifts in the MgF₃^? transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO₃^? oxygens in the corresponding TS, implying that oxygen coordinated to Mg has the greatest electron density. This was validated by QM calculations giving a picture of the electronic properties of the transition state (TS) for nucleophilic attack of water on the γ‐PO₃^? group based on the structure of a RhoA/GAP‐GDP‐MgF₃^? TSA complex. The TS model displays a network of 20 hydrogen bonds, including the GAP Arg85′ side chain, but neither phosphate torsional strain nor general base catalysis is evident. The nucleophilic water occupies a reactive location different from that in multiple ground state complexes, arising from reorientation of the Gln‐63 carboxamide by Arg85′ to preclude direct hydrogen bonding from water to the target γ‐PO₃^? group.     

正硅酸乙酯水解过程的半经验量子化学研究

通过半经验量子化学方法研究了正硅酸乙酯的最优化分子几何结构并推断了催化水解机理。通过用MNDO方法求得正硅酸乙酯在不同条件下水解反应过程的位能曲线,研究了不同催化剂对正硅酸乙酯水解反应过程的影响。计算结果表明,碱催化过程是一个放热过程,硅原子可从原先的4配位的正四面体结构向6配位的八面体结构转变。而在酸性条件下,水合质子作为亲电试剂,可以使正硅酸乙酯的烷氧基质子化,从而增加了正硅酸乙酯的亲电能力。质子化后的正硅酸乙酯容易被亲核试剂所进攻,进攻过程是一个S_N2亲核取代反应过程。计算结果表明,在有氟离子参与的反应过程中,氟离子对正硅酸乙酯亲核进攻所形成的6配位结构易与亲核试剂水分子发生亲核反应。这些结论对实验研究将起到很重要的指导意义。