On the adhesion between fine particles and nanocontacts: an atomic force microscope study

In this study we measured the adhesion forces between atomic force microscope (AFM) tips or particles attached to AFM cantilevers and different solid samples. Smooth and homogeneous surfaces such as mica, silicon wafers, or highly oriented pyrolytic graphite, and more rough and heterogeneous surfaces such as iron particles or patterns of TiO2 nanoparticles on silicon were used. In the first part, we addressed the well-known issue that AFM adhesion experiments show wide distributions of adhesion forces rather than a single value. Our experiments show that variations in adhesion forces comprise fast (i.e., from one force curve to the next) random fluctuations and slower fluctuations, which occur over tens or hundreds of consecutive measurements. Slow fluctuations are not likely to be the result of variations in external factors such as lateral position, temperature, humidity, and so forth because those were kept constant. Even if two solid bodies are brought into contact under precisely the same conditions (same place, load, direction, etc.) the result of such a measurement will often not be the same as that of the previous contact. The measurement itself will induce structural changes in the contact region, which can change the value for the next adhesion force measurement. In the second part, we studied the influence of humidity on the adhesion of nanocontacts. Humidity was adjusted relatively fast to minimize tip wear during one experiment. For hydrophobic surfaces, no signification change in adhesion force with humidity was observed. Adhesion force versus humidity curves recorded with hydrophilic surfaces either showed a maximum or continuously increased. We demonstrate that the results can be interpreted with simple continuum theory of the meniscus force. The meniscus force is calculated based on a model that includes surface roughness and takes into account different AFM tip (or particle) shapes by a two-sphere model. Experimental and theoretical results show that the precise contact geometry has a critical influence on the humidity dependence of the adhesion force. Changes in tip geometry on the sub-10-nm length scale can completely change adhesion force versus humidity curves. Our model can also explain the differences between earlier AFM studies, where different dependencies of the adhesion force on humidity were observed.     

A strategic study towards constructing the nine-membered azonane ring system of palhinine A via an azidoketol fragmentation reaction

A proposed strategy for constructing the nine-membered azonane ring system embedded in the isotwistane framework of palhinine A has been preliminarily studied on the basis of an azidoketol fragmentation reaction together with a SmI2-mediated pinacol coupling. Albeit negative results for building the azonane ring scaffold via a tertiary azidoketol fragmentation, the present exploration strategically provided an endeavor to probe the synthetically challenging issue in the synthetic study of palhinine A.     

The initial oxidation of magnesium: an in situ study with XPS,HERDA and ellipsometry

The initial oxidation of magnesium at oxygen partial pressures between 1.3 × 10^?8 and 1.3 × 10^?5 Pa and at temperatures ranging from 273 to 550 K has been investigated in situ with X‐ray photoelectron spectroscopy (XPS), ellipsometry and high resolution elastic recoil detection analysis (HERDA). Quantitative analysis of the XPS spectra showed a clear oxygen deficiency with respect to MgO for the initial oxide. HERDA measurements confirmed this relatively low oxygen content in the thin oxide layers formed. Ellipsometry measurements showed that the electronic structure of the initially formed oxide differs significantly from that of bulk MgO. The band gap values at room temperature for the oxide layers investigated are clearly smaller than the value for bulk MgO. Copyright © 2006 John Wiley & Sons, Ltd.     

A peptide hydroxamate library for enrichment of metalloproteinases: towards an affinity-based metalloproteinase profiling protocol

A compound library of 96 enantiopure N-terminal succinyl hydroxamate functionalized peptides was synthesized on solid phase. All compounds were tested for their inhibitory potential towards MMP-9, MMP-12 and ADAM-17, which led to the identification of both broad spectrum inhibitors and metalloproteinase-selective ones. Eight potent and less potent inhibitors were immobilized on Sepharose beads and evaluated in solid-phase enrichment of active MMP-9, MMP-12 and ADAM-17. In addition, one of these inhibitors was used for solid-phase enrichment of endogenous ADAM-17 from a complex proteome (a lysate prepared from cultured A549 cells).     

Studies directed towards the total synthesis of clavosolides: synthesis of an isomer of clavosolide A

The total synthesis of clavosolide A, employing a radical-mediated route to build its substituted tetrahydropyran unit, a Yamaguchi reaction to construct the diolide aglycon and the Schmidt method for the final glycosidation step, revealed that the reported structure is an isomer of the natural product.     

A molecular modeling study on full-length insulin: insight into initial events of amyloid formation

Studies on the structure and physico-chemical properties of amyloid fibrils are important with regard to a better understanding of amyloid diseases such as Alzheimer’s. Insulin is used as a protein model which is easily driven toward amyloid formation. In the present study, five sets of 15 ns molecular dynamics simulations were performed on insulin in order to observe the initial structural changes that occur in the process of amyloid formation. Potential energy, RMSD, and secondary structure percentage of sampled structures were analyzed in all experiments. Common residues that undergo the first conformational changes were detected to be S9 and V10 of the A chain, as well as G8 and S9 of the B chain. The RMSD of truncated insulin increased much more than full-length insulin to about 18 Å. However, the beta-sheet structures percentage of full-length insulin, which is an indicative of amyloid formation, was higher than the truncated form in the presence of salt. This is indicative of the importance of the five residues of the B chain C-terminal in the insulin misfolding process. Overall, simulating full-length insulin under high temperature and in the presence of KCl could be used to assess amyloid formation and potential amyloid inhibitors of this protein.     

A theoretical study on structures, energetics, and spectra of Br-.nCO2 clusters: towards bridging the gap between micro-domain and macro-domain

Structures, energetics, and spectra of Br(-).nCO(2) (n = 1-8) clusters are studied based on ab initio electronic structure theory. The geometry of each size of clusters is evaluated by employing second-order Moller-Plesset (MP2) perturbation theory. It is observed that the solvent CO(2) molecules approach the bromide moiety from one side in an asymmetric fashion except for the Br(-).8CO(2) cluster. Simple electrostatic model for charge-quadrupole interactions is valid for the Br(-).nCO(2) clusters. Reduced variational space based energy decomposition method shows that the electrostatic interaction is the major component and polarization and charge transfer energies are the other significant components of the total interaction energy. Both adiabatic and vertical electron detachment energies and solvation energies are calculated at MP2 level of theory. We have observed an excellent agreement between theory and experiment for the vertical detachment and solvation energies. Calculated quantities based on the analytical expression which connects the finite domain to macroscopic one are found to be very good in agreement with the available experimental results. The present study reveals a 2.6 eV increase in the detachment energy of bromide anion due to the solvation effect of CO(2), which is relatively small compared to that of the corresponding 4.7 eV increase in detachment energy in water.     

Impact of scoring functions on enrichment in docking-based virtual screening: an application study on renin inhibitors

The docking program LigandFit/Cerius(2) has been used to perform shape-based virtual screening of databases against the aspartic protease renin, a target of determined three-dimensional structure. The protein structure was used in the induced fit binding conformation that occurs when renin is bound to the highly active renin inhibitor 1 (IC(50) = 2 nM). The scoring was calculated using several different scoring functions in order to get insight into the predictability of the magnitude of binding interactions. A database of 1000 diverse and druglike compounds, comprised of 990 members of a virtual database generated by using the iLib diverse software and 10 known active renin inhibitors, was docked flexibly and scored to determine appropriate scoring functions. All seven scoring functions used (LigScore1, LigScore2, PLP1, PLP2, JAIN, PMF, LUDI) were able to retrieve at least 50% of the active compounds within the first 20% (200 molecules) of the entire test database. A hit rate of 90% in the top 1.4% resulted using the quadruple consensus scoring of LigScore2, PLP1, PLP2, and JAIN. Additionally, a focused database was created with the iLib diverse software and used for the same procedure as the test database. Docking and scoring of the 990 focused compounds and the 10 known actives were performed. A hit rate of 100% in the top 8.4% resulted with use of the triple consensus scoring of PLP1, PLP2, and PMF. As expected, a ranking of the known active compounds within the focused database compared to the test database was observed. Adequate virtual screening conditions were derived empirically. They can be used for proximate docking and scoring application of compounds with putative renin inhibiting potency.     

A computer simulation study of the segregation of amphiphiles in binary immiscible matrices: short asymmetric copolymers in short homopolymers

The bulk and interfacial properties of ternary mixtures with asymmetric amphiphiles (A2B8) in A2 and B2 matrices and in A2 and B10 matrices are investigated by the dissipative particle dynamics type of molecular-dynamics simulations. The monomer concentrations of A2B8(phiA2B8) studied are below the critical micelle concentration (phiA2B8(cmc)) for the formation of micelles in the presence of an adsorbed amphiphilic monolayer at the interface. Macrophase separation from the mixed phase to the segregated state with A-rich and B-rich coexisting phases and the segregation of A2B8 at the interface are thermodynamically gradual but are accompanied by a pronounced stretching and orientation of the constituent chains. The segregation of A2B8 at the interface broadens the interfacial region and reduces the interfacial tension. The chain conformation of the asymmetric amphiphilic molecules and the interfacial properties are dominated by the majority block in the amphiphilic chain and dependent on the composition of the matrix in contact with the majority block. In the A2 and B2 matrices, the B8 blocks in A2B8 chains at the interface resemble a wet brush swollen by short B2 chains. Swelling is responsible for the pronounced stretching and orienting of the amphiphilic chains and the reduced interfacial amphiphile enrichment. At the same interfacial amphiphile excess, however, swollen amphiphiles are more efficient in reducing the interfacial tension than nonswollen amphiphiles.     

Use of diagnostic neutral losses for structural information on unknown aromatic metabolites: an experimental and theoretical study

This work presents the use of neutral losses (NL) for the identification of compounds related to the metabolism of tyrosine. The mass spectra of all the studied compounds, recorded at several collision energies, are compared. The fragmentation mechanism of protonated molecules, MH⁺, is explained by combining collision‐induced dissociation (CID) mass spectra and density functional theory (DFT) calculations. The results show that the first fragmentation is the elimination from MH⁺ of a neutral molecule including a functional group of the linear chain. Three primary neutral losses are observed: 17 u (NH₃), 18 u (H₂O) and 46 u (H₂O+CO) characterizing amino, hydroxyl and carboxylic functions on the linear chain. The presence and abundance of ions corresponding to these losses are dependent on (i) the position of the functional group on the linear chain, (ii) the initial localisation of the protonating hydrogen, and (iii) the substitution of the aromatic ring. For compounds including a functional group on the benzylic carbon atom, the investigation of the other functions requires the knowledge of secondary fragmentations. Among these secondary fragmentations we have retained the loss of NH₃ from [MH–18u]⁺ and the loss of ketene from [MH–17u]⁺. Experimentally these fragmentations are detected using losses of 35 u and 59/73 u. In other words, NL35 identifies hydroxy and amino compounds and NL 46 and/or NL59/73 identify carboxylic acids. The search for characteristic neutral losses is used for the analysis of compounds in a mixture and the analysis of biological fluid. We show that selective search of several neutral losses allows also the unambiguous differentiation of isomers and gives the opportunity to identify compounds in biological fluids. Copyright © 2008 John Wiley & Sons, Ltd.     

Comparison of the efficacy of 177Lu-EDTMP, 177Lu-DOTMP and 188Re-HEDP towards bone osteosarcoma: an in vitro study

Among the radiopharmaceuticals harnessed for palliation of bone pain in osseous metastases patients, ¹⁷⁷Lu labeled phosphonates such as EDTMP (Ethylene diamine tetramethylene phosphonic acid) as well as DOTMP (1,4,7,10-tetraaza-cyclo-dodecane-1,4,7,10 tetraethylene phosphonic acid) and ¹⁸⁸Re-labeled HEDP (1,1-hydroxyethylene diphosphonic acid) seem to be the most favorable for treatment of small and medium/large size bone lesions, respectively. A comparative assessment of ¹⁷⁷Lu-EDTMP, ¹⁷⁷Lu-DOTMP and ¹⁸⁸Re-HEDP in osteosarcoma tumor cell line was carried out to evaluate their relative efficacy. It was found that ¹⁸⁸Re-HEDP is more potent in induction of cell toxicity and apoptosis compared to the ¹⁷⁷Lu-EDTMP and ¹⁷⁷Lu-DOTMP, thus ¹⁸⁸Re-HEDP might have great clinical significance.

     

Synthesis of screening substrates for the directed evolution of sialic acid aldolase: towards tailored enzymes for the preparation of influenza A sialidase inhibitor analogues

The stereoselective synthesis of two epimeric screening substrates, (4R, 5R, 6R)- and (4S, 5R, 6R)-6-dipropylcarbamoyl-2-oxo-4,5,6-trihydroxy-hexanoic acid, for the directed evolution of sialic acid aldolase is described. The complementary methods relied on stereoselective indium-mediated additions of ethyl alpha-bromomethyl acrylate to functionalised aldehydes. With an alpha-hydroxy aldehyde, (2R, 3R)-2,3-dihydroxy-4-oxo butanoic acid dipropylamide, the addition was chelation controlled, and the syn product, (6R, 5R, 4S)-6-dipropylcarbamoyl-2-methylidene-4,5,6-trihydroxy-hexanoic acid ethyl ester, was obtained. In contrast, the stereochemical outcome of the addition to (2R, 3R)-N,N-dipropyl-2,3-O-isopropylidene-4-oxobutyramide was consistent with Felkin-Anh control, and the anti adduct, (4R, 5R, 6R)-6-dipropylcarbamoyl-2-methylidene-4-hydroxy-5,6-O-isopropylidene-hexanoic acid ethyl ester, was the major product. Ozonolysis and deprotection gave the screening substrates as mixtures of furanose and pyranose forms, in good yields.     

A novel way to study the initial stages of soap-free emulsion polymerizations: The intercalation of polystyrene oligomers into hydrotalcite

The dominant species in the early stages of an emulsifier-free emulsion polymerization of styrene has been found to be an oligomer of two to three monomer units using a novel trapping technique. This involved the intercalation of charged primary oligomers between the layers of a hydrotalcite, [Mg₄Al₂(OH)₁₂]²⁺[A]^2- (where A = dianion). Hydrotalcites are an important class of lamellar, inorganic compounds whose interlayer spacing can be mod-ified by anion exchange. Our approach first involved preparing a hydrotalcite precursor in which the layers were propped apart by an organic dianion (terephthalate = TA). This material was then used to capture the negatively charged polystyrene oligomers from the emulsion polymerization reaction mixture. We found that TA was rapidly ion-exchanged for the charged oligomers. The resulting pillared hydrotalcite material was characterized using XRD and SEC. We found that the interlayer spacing between the hydroxide layers increased to 23.2 Å on exposure to the emulsion reaction mixture. This represents an interlayer expansion of 18.3 Å (after subtraction of the hydroxide layer contribution), which is cnsistent with intercalation of oligomers with two to three monomer units arranged in a bilayer. This size estimate was confirmed by the results of size exclusion chromatography. © 1995 John Wiley & Sons, Inc.     

A theoretical study of the interfaces between aluminium and poly(ethylene terephthalate), polycaprolactone,and polystyrene: Illustration of the reactivity of aluminium towards ester groups and phenyl rings

The interfaces between aluminium and poly(ethylene terephthalate), poly(ε-caprolactone), and polystyrene are investigated theoretically in order to assess the reactivity of aluminium towards the functional groups (i.e., ester functions and phenyl rings) present at the surface of the polymers. The theoretical approach consists in performing quantum-chemical calculations on small molecular model systems interacting with a few Al atoms. The geometric structures of the organometallic complexes are optimized and their stabilities and changes in charge densities due to Al bonding are evaluated. The results are compared to experimental X-ray photoelectron spectroscopy data collected during the early stages of interface formation following aluminium deposition on the polymer surfaces. In agreement with experimental data, it emerges from this study that aluminium interacts strongly wirth both polyesters by forming covalent bonds with the carbon and oxygen atoms of the ester functions. The attack of the poly(ethylene terephthalate) phenyl rings occurs only for high metal coverage and does not hamper the interaction with the ester sites. Furthermore, our theoretical investigation has confirmed, on one hand, that the aluminium/polystyrene interactions are weak, and on the other hand, the absence of strong reactions at the interfaces between aluminium and saturated hydrocarbon polymers.