Packing considerations of bis‐dimedone derivatives

We have determined the crystal structures of 2,2′‐(4‐fluoro­phenyl)­methyl­enebis(3‐hydroxy‐5,5‐di­methyl‐2‐cyclo­hexen‐1‐one), C₂₃H₂₇FO₄, (I), 2,2′‐(4‐chloro­phenyl)­methyl­enebis(3‐hy­droxy‐5,5‐dimethyl‐2‐cyclo­hexen‐1‐one), C₂₃H₂₇ClO₄, (II), 2,2′‐(4‐hydroxy­phenyl)­methyl­enebis(3‐hydroxy‐5,5‐di­methyl‐2‐cyclo­hexen‐1‐one), C₂₃H₂₈O₅, (III), 2,2′‐(4‐methyl­phenyl)­methyl­enebis(3‐hydroxy‐5,5‐di­methyl‐2‐cyclo­hexen‐1‐one), C₂₄H₃₀O₄, (IV), 2,2′‐(4‐methoxy­phenyl)­methyl­enebis(3‐hy­droxy‐5,5‐di­methyl‐2‐cyclo­hexen‐1‐one), C₂₄H₃₀O₅, (V), and 2,2′‐(4‐N,N′‐di­methyl­amino­phenyl)­methyl­enebis(3‐hydroxy‐5,5‐di­methyl‐2‐cyclo­hexen‐1‐one), C₂₅H₃₃NO₄, (VI). Structures (III) to (VI) of these bis‐dimedone derivatives show nearly the same packing pattern irrespective of the different substituent in the para position of the aromatic ring. However, (II) does not fit into this scheme, although the Cl atom is a substituent not too different from the others. The different packing of the fluoro compound, (I), can be explained by the fact that it crystallizes with two mol­ecules in the asymmetric unit, which show a different conformation of the dimedone ring. On the other hand, (I) shows a similar packing pattern to bis(2‐hydroxy‐4,4‐di­methyl‐6‐oxo‐1‐cyclo­hexenyl)­phenyl­methane, a compound containing an aromatic ring without any substituent and with Z′ = 2.     

A zinc–lithium complex of 4,7‐bis(2‐aminoethyl)‐1,4,7‐triazacyclononane‐1‐acetate

The asymmetric unit of {[4,7‐bis(2‐amino­ethyl)‐1,4,7‐tri­aza­cyclo­nonan‐1‐yl]acetato}zinc(II) triaqua{μ‐[4,7‐bis(2‐amino­ethyl)‐1,4,7‐tri­aza­cyclo­nonan‐1‐yl]acetato}lithium(I)zinc(II) chloride diperchlorate, [Zn(C₁₂H₂₆N₅O₂)][LiZn(C₁₂H₂₆N₅O₂)(H₂O)₃]Cl(ClO₄)₂, obtained from the reaction between the lithium salt of 4,7‐bis(2‐amino­ethyl)‐1,4,7‐tri­aza­cyclo­nonane‐1‐acetate and Zn(ClO₄)₂, contains two Zn^II complexes in which each Zn^II ion is six‐coordinated by five N‐atom donors and one O‐­atom donor from the ligand. One carboxyl­ate O‐atom donor is not involved in coordination to a Zn^II atom, but coordinates to an Li⁺ ion, the tetrahedral geometry of Li⁺ being completed by three water mol­ecules. The two complexes are linked via a hydrogen bond between a primary amine N—H group and the carboxyl­ate‐O atom not involved in coordination to a metal.     

Piv‐Proψ[CH2–NH–O]Gly–NHiPr

The pseudodipeptide, (S)‐N‐iso­propyl {[N‐(pivaloyl)­pyrrol­idin‐2‐yl]­methyl­amino­oxy}acet­amide, C₁₅H₂₉N₃O₃, adopts a global extended conformation with the hydroxy­l­amine group in the g⁺/g^? structure. The C‐terminal amide NH interacts intramolecularly with the hydroxy­lamine O atom. Both NH bonds of each mol­ecule are hydrogen bonded to the C‐­terminal amide carbonyl of a neighbouring mol­ecule.     

{(E)‐ and {(Z)‐2‐[α,β‐bis­(methoxy­carbonyl)­vinyl]­cyclo­pentadien‐1‐yl­idene}tri­phenyl­phospho­rane

The Ramirez yl­ide undergoes electrophilic substitution with di­alkyl acetyl­ene­di­carboxyl­ates, yielding a mixture of the Z and E adducts. The crystal structure analyses of the two adducts formed using di­methyl­acetyl­ene, viz. di­methyl (E)‐ and (Z)‐1‐[2‐(tri­phenyl­phospho­ranyl­idene)­cyclo­pentadien‐1‐yl]­ethyl­ene­di­carboxyl­ate, both C₂₉H₂₅O₄P, explain an unusual chemical shift observed for the vinyl H atom of the Z adduct, which had previously precluded a definitive assignment of the isomers. In addition, the structures explain why only one of the isomers reacts further with acetyl­ene esters to produce azulenes with a rare substitution pattern.     

4,5,9,10‐Tetrahydro‐4‐methyl‐2‐phenyl‐9,10‐epoxy‐3H,10aH‐cyclobuta[a]benzo[2,3,4‐de]isoquinoline‐3,5‐dione

In the title compound, C₂₁H₁₅NO₃, which is one of the photoreaction products of N‐methyl‐1,8‐naphthalene­dicar­box­imide with phenyl­acetyl­ene, the cyclo­butene and epoxy rings are trans to each other across the cyclo­hexene ring of the tetralin moiety. The dihedral angle between the mean planes of the cyclo­butene and cyclo­hexene rings is 112.80 (2)°, while the latter makes a dihedral angle of 103.70 (9)° with the epoxy ring. The crystal structure is stabilized by C—H⋯O intermolecular interactions.     

Bis(2,5‐dimethoxy‐4‐methylphenyl)methane and bis(2,5‐dimethoxy‐3,4,6‐trimethylphenyl)methane

Bis(2,5‐di­methoxy‐4‐methyl­phenyl)­methane, C₁₉H₂₄O₄, (IIa), was obtained and characterized as a minor product from the reaction of tolu­hydro­quinone di­methyl ether (1,4‐dimethoxy‐2‐methylbenzene) with N‐(hydroxy­methyl)­tri­fluoro­acet­amide. Similarly, bis(2,5‐di­methoxy‐3,4,6‐tri­methyl­phenyl)­methane, C₂₃H₃₂O₄, (IIb), was prepared from the corresponding reaction of tri­methyl­hydro­quinone di­methyl ether (2,5‐dimethoxy‐1,3,4‐trimethylbenzene). The mol­ecules of (IIa) and (IIb) each lie on a twofold axis passing through the methyl­ene group. The dihedral angle between the planar phenyl rings is 73.4 (1)° in (IIa) and 77.9 (1)° in (IIb). The external bond angles around the bridging methyl­ene group are 116.6 (2) and 117.3 (2)° for (IIa) and (IIb), respectively. In (IIa), the methoxy substituents lie in the plane of the ring and are conjugated with the aromatic system, whereas in (IIb), they are almost perpendicular to the phenyl ring and are positioned on opposite sides.     

The 1:1 adduct of Kemp's triacid with 2‐aminopyridine

The crystal structure determination of the molecular proton‐transfer adduct of Kemp's triacid (cis‐cis‐1,3,5‐tri­methyl­cyclo­hexane‐1,3,5‐tri­carboxylic acid, KTA) with 2‐amino­pyridine (2‐APY), namely 2‐amino­pyridinium 3,5‐di­carboxy‐1,3,5‐tri­methyl­cyclo­hexane­carboxyl­ate, 2‐APY⁺·KTA^? or C₅H₇N₂⁺·C₁₂H₁₇O₆^?, has revealed a centrosymmetric hydrogen‐bonded cyclic KTA homodimer repeating unit [O?O 2.524 (4) Å] linked into a polymer structure through the pyridinium and amino groups of the 2‐APY mol­ecule [O?N 2.736 (4), 2.989 (4) and 2.999 (4) Å].     

The peptide (Z)‐Pro–Leuol

The structure of the synthetic protected dipeptide (Z)‐Pro–Leuol [systematic name: benzyl 2‐(1‐hydroxy­methyl‐3‐methyl­butyl­amino­carbonyl)­pyrrolidine‐1‐carboxyl­ate], C₁₉H₂₈N₂O₄, was determined by X‐ray crystallography. The peptide adopts a novel backbone conformation compared with other longer oligopeptides containing Pro–Leuol.     

Hydro­gen‐bonded assemblages in 2,6‐bis­(hydroxy­methyl)‐4‐R‐phenol,with R = methyl,methoxy, phenoxy and 1‐(4‐methoxy­phenyl)‐1‐methyl­ethyl

Four derivatives of 2,6‐bis­(hydroxy­methyl)­phenol, with various para substituents, have been investigated; these are 2,6‐bis­(hydroxy­methyl)‐4‐methyl­phenol, C₉H₁₂O₃, (I), 2,6‐bis­(hydroxy­methyl)‐4‐methoxy­phenol, C₉H₁₂O₄, (II), 2,6‐bis­(hydroxy­methyl)‐4‐phenoxy­phenol, C₁₄H₁₄O₄, (III), and 2,6‐bis­(hydroxy­methyl)‐4‐[1‐(4‐methoxy­phenyl)‐1‐methyl­ethyl]­phenol, C₁₈H₂₂O₄, (IV). All four structures display hydrogen‐bonding networks resulting in sheets, with possible weak inter‐sheet π–π interactions in one case. In all the structures but one, the mol­ecules form centrosymmetric dimeric subunits held together by two hydrogen bonds between the hydroxy­methyl groups and, in two cases, by probable π–π interactions.     

Transition metal complexes with thiosemicarbazide‐based ligands. XLIV. Aqua(3‐hydroxy‐5‐hydroxymethyl‐2‐methylpyridine‐4‐carboxaldehyde 3‐­methylisothiosemicarbazone‐κ3O,N1,N4)nitratocopper(II) nitrate

The title complex, [Cu(NO₃)(C₁₀H₁₄N₄O₂S)(H₂O)](NO₃), is the first metal complex with a Schiff base derived from iso­thio­semicarbazide and pyridoxal (pyridoxal is 3‐hydroxy‐5‐­hydroxy­methyl‐2‐methyl­pyridine‐4‐carbox­aldehyde). The Cu^II environment is a square pyramid, the equatorial plane of which is formed by the tridentate ONN‐coordinated iso­thio­semicarbazone and one water mol­ecule, while the nitrate ligand is in the apical position. The existence of numerous strong intermolecular hydrogen bonds, and weak C—H?O and C—H?π interactions, leads to a three‐dimensional supramolecular structure.     

Ethyl N‐[2‐(hydroxy­acetyl)­phenyl]­carbamate,ethyl N‐[2‐(hydroxy­acetyl)‐4‐iodo­phenyl]­carbamate and ethyl N‐[2‐(hydroxy­acetyl)‐4‐methyl­phenyl]­carbamate

In ethyl N‐[2‐(hydroxy­acetyl)phenyl]carbamate, C₁₁H₁₃NO₄, all of the non‐H atoms lie on a mirror plane in the space group Pnma; the mol­ecules are linked into simple chains by a single C—H⋯O hydrogen bond. The mol­ecules of ethyl N‐[2‐(hydroxy­acetyl)‐4‐iodo­phenyl]carbamate, C₁₁H₁₂INO₄, are linked into sheets by a combination of O—H⋯I and C—H⋯O hydrogen bonds and a dipolar I⋯O contact. Ethyl N‐­[2‐(hydroxy­acetyl)‐4‐methyl­phenyl]carbamate, C₁₂H₁₅NO₄, crystallizes with Z′ = 2 in the space group P; pairs of mol­ecules are weakly linked by an O—H⋯O hydrogen bond and these aggregates are linked into chains by two independent aromatic π–π stacking inter­actions.     

(4R,4aR,6S,7S,7aS)‐6‐Hydro­xy‐7‐hy­droxy­methyl‐4‐methyl­per­hydro­cyclo­penta­[c]­pyran‐1‐one chloro­form solvate from Valeriana laxiflora

The structure of an iridolactone isolated from Valeriana laxiflora was established as (4R,4aR,6S,7S,7aS)‐6‐hydroxy‐7‐hydroxy­methyl‐4‐methyl­per­hydro­cyclo­penta­[c]­pyran‐1‐one chloro­form solvate, C₁₀H₁₆O₄·CHCl₃. The two rings are cis‐fused. The δ‐lactone ring adopts a slightly twisted half‐chair conformation with approximate planarity of the lactone group and the cyclo­pentane ring adopts an envelope conformation. The hydroxy group, the hydroxymethyl group and the methyl group all have β orientations. The absolute configuration was determined using anomalous dispersion data enhanced by the adventitious inclusion of a chloro­form solvent mol­ecule. Hydro­gen bonding, crystal packing and ring conformations are discussed in detail.     

(1R,3S)‐Camphoramic acid

The title chiral compound, 3‐amino­carbonyl‐1,2,2‐tri­methyl­cyclo­pentane‐1‐carboxylic acid, C₁₀H₁₇NO₃, was prepared from (1R,3S)‐camphoric acid. The five‐membered ring adopts a conformation which is intermediate between a twist and an envelope. Elongations of the C—C bonds and contractions of the C—C—C bond angles are observed within the five‐membered ring. A ¹H NMR spectrum was recorded to assist in distinguishing the amide group from the carboxyl group.     

Di‐μ‐iodo‐bis{[1,1′‐methyl­enebis(3,5‐dimethyl‐1H‐pyrazole‐κN2)]copper(I)}

In the title compound, [Cu₂I₂(C₁₁H₁₆N₄)₂], each of the two crystallographically equivalent Cu atoms is tetrahedrally coordinated by two N atoms from one 1,1′‐methyl­ene­bis(3,5‐di­methyl‐1H‐pyrazole) ligand and two bridging iodide anions. The mol­ecule has a crystallographic center of symmetry located at the mid‐point of the Cu·Cu line. One H atom of the CH₂ group of the 1,1′‐methyl­ene­bis(3,5‐di­methyl‐1H‐pyrazole) ligand interacts with an iodide ion in an adjacent mol­ecule to afford pairwise intermolecular C—H·I contacts, thereby forming chains of mol­ecules running along the [101] direction.     

An intermediate in a new synthesis approach to β‐substituted β‐hydroxy­aspartame

The crystal and molecular structure of 1‐tert‐butyl 4‐ethyl (2′R,3′R,5′R,2S,3S)‐3‐bromo­methyl‐3‐hydroxy‐2‐[(2′‐hydroxy‐2′,6′,6′‐tri­methyl­bi­cyclo­[3.1.1]­hept‐3′‐yl­idene)­amino]­succinate, C₂₁H₃₄BrNO₆, is presented. This compound is an intermediate in the new synthetic route to β‐substituted β‐hydroxy­aspartates, which are blockers of glutamate transport.     

[Hydroxy(aryl)methylene]diphos­phonic acids,a class of drugs in bone pathology treatments,crystallize as head‐to‐head dimers

Two [hydroxy­(aryl)­methyl­ene]­di­phospho­nic acids have been crystallized as dimers. The first compound, [hydroxy­(phenyl)­methyl­ene]­di­phospho­nic acid monohydrate, C₇H₁₀O₇P₂·H₂O, crystallizes in the non‐centrosymmetric space group P2₁, with the two enantiomers related by a non‐crystallographic centre of inversion, while the second compound, [hydroxy(4‐nitro­phenyl)­methyl­ene]­di­phospho­nic acid tetra­hydro­furan disolvate, C₇H₉NO₉P₂·2C₄H₈O, crystallizes in the centrosymmetric space group P2₁/c and uses the centre of symmetry to form the same dimer.     

The hydrogen‐bonded adduct 7,16‐diazonia‐18‐crown‐6–4‐aminobenzenesulfonate–water (1/2/2)

In the title hydrated adduct, 1,4,10,13‐tetraoxa‐7,16‐diazo­nia­cyclo­octa­decane bis(4‐amino­benzene­sulfonate) dihydrate, C₁₂H₂₈N₂O₄²⁺·2C₆H₆NO₃S⁻·2H₂O, formed between 7,16‐di­aza‐18‐crown‐6 and the dihydrate of 4‐amino­benzene­sulfonic acid, the macrocyclic cations lie across centres of inversion in the orthorhombic space group Pbca. The anions alone form zigzag chains, and the cations and anions together form sheets that are linked via water mol­ecules and anions to form a three‐dimensional grid.     

The new polynuclear titanium(IV) complex [(Cp*TiCl)(μ‐O)2(Cp*Ti)2(μ‐O)(μ‐O)2]2Ti (Cp* is η5‐C5Me5)

A new polynuclear titanium(IV) complex, dichloro­deca‐μ₂‐oxo‐hexa­kis­(penta­methyl­cyclo­penta­dien­yl)hexa­titanium(IV), [Ti₆(C₁₀H₁₅)₆Cl₂O₁₀], has been synthesized by hydro­lysis of a titanium complex bearing an N‐(2‐hydr­oxy‐3,5‐dimethyl­benz­yl)diethano­lamine Mannich ligand. The mol­ecule has two O‐bridged Ti₃O₃ rings linked to two similar rings through a tetra­hedrally O‐coordinated Ti atom. All Ti atoms except the central one are coordinated to penta­methyl­cyclo­penta­dien­yl (Cp*) ligands. The Cp* ligands are arranged with approximate symmetry with respect to the Ti/O/Cl core.     

2′‐Hydroxy‐4′′‐dimethylaminochalcone

The title compound, 3‐[4‐(di­methyl­amino)­phenyl]‐1‐(2‐hydroxy­phenyl)­prop‐2‐en‐1‐one, C₁₇H₁₇NO₂, is a chalcone derivative substituted by 2′‐hydroxyl and 4′′‐di­methyl­amino groups. The crystal structure indicates that the aniline and hydroxy­phenyl groups are nearly coplanar, with a dihedral angle of 10.32 (16)° between their phenyl rings. The molecular planarity of this substituted chalcone is strongly affected by the 2′‐hydroxyl group.     

(Z)‐2‐Methylbuten‐1‐yl(aryl)iodonium trifluoromethanesulfonates containing electron‐withdrawing groups on the aryl moiety

The crystal structures of [(Z)‐2‐methyl­but‐1‐en‐1‐yl]­[4‐(tri­fluoro­methyl)­phenyl]­iodo­nium tri­fluoro­methane­sulfonate, C₁₂H₁₃F₃I⁺·CF₃O₃S^?, (I), (3,5‐di­chloro­phenyl)­[(Z)‐2‐methyl­but‐1‐en‐1‐yl]­iodo­nium tri­fluoro­methane­sulfonate, C₁₁H₁₂­Cl₂I⁺·CF₃O₃S^?, (II), and bis{[3,5‐bis­(tri­fluoro­methyl)­phenyl][(Z)‐2‐methyl­but‐1‐en‐1‐yl]­iodo­nium} bis­(tri­fluoro­methane­sulfonate) di­chloro­methane solvate, 2C₁₃H₁₂F₆I⁺·­2CF₃­O₃S^?·CH₂Cl₂, (III), are described. Neither simple acyclic β,β‐di­alkyl‐substituted alkenyl­(aryl)­idonium salts nor a series containing electron‐deficient aryl rings have been described prior to this work. Compounds (I)–(III) were found to have distorted square‐planar geometries, with each I atom interacting with two tri­fluoro­methane­sulfonate counter‐ions.