Racemic and chiral 1‐[N‐(chloro­acetyl)carbamoylamino]‐2,3‐dihydro‐1H‐inden‐2‐yl chloroacetate

In the racemic crystals of (1S,2R)‐ or (1R,2S)‐1‐[N‐(chloro­acetyl)­carbamoyl­amino]‐2,3‐di­hydro‐1H‐inden‐2‐yl chloro­acetate, C₁₄H₁₄Cl₂N₂O₄, (I), the enantiomeric mol­ecules form a dimeric structure via the N—H?O cyclic hydrogen bond of the carbamoyl moieties. In the chiral crystals of (—)‐(1S,2R)‐1‐[N‐(chloro­acetyl)­carbamoyl­amino]‐2,3‐di­hydro‐1H‐inden‐2‐yl chloro­acetate, C₁₄H₁₄Cl₂N₂O₄, (II), the N—­H?O intermolecular hydrogen bond forms a zigzag chain around the twofold screw axis. The melting points and calculated densities of (I) and (II) are 446 and 396 K, and 1.481 and 1.445 Mg m^?3, respectively.     

Azadirachtol,a tetranortriterpenoid from neem kernels

The title compound, di­methyl (?)‐(2aR,3R,4R,4aS,5R,7aS,8R,10S,10aR)‐3,8,10‐tri­hydroxy‐4‐[(2R,6R)‐2‐hydroxy‐11‐methyl‐5,7,10‐trioxatetra­cyclo­[6.3.1.0^2,60^9,11]­dodec‐3‐en‐9‐yl]‐4‐methyl­per­hydro­isobenzo­furano­[5,4,3a‐cd]­isobenzofuran‐5,10a‐di­acetate, C₂₈H₃₆O₁₃, which exhibits higher antifeedant activity than azadirachtin‐A, a known potent antifeedant, was isolated from neem kernels. The asymmetric unit of the structure contains two independent mol­ecules, which differ in the conformations of their functional groups and also in the conformations of some of the rings. The relative orientation between the decalin and furan­yl moieties is similar to that observed in the majority of azadirachtin structures, but is different from that in azadirachtin‐A. The two symmetry‐independent mol­ecules are linked into dimeric units by intermolecular O—H?O hydrogen bonds.     

The sesquiterpenoid nootkatone and the absolute configuration of a di­bromo derivative

Nootkatone, or (4R,4aS,6R)‐4,4a,5,6,7,8‐hexa­hydro‐4,4a‐di­methyl‐6‐(1‐methyl­ethenyl)­naphthalen‐2(3H)‐one, C₁₅H₂₂O, a sesquiterpene with strong repellent properties against Formosan subterranean termites and other insects, has the valencene skeleton. The di­bromo derivative (1S,3R,4S,4aS,6R,8aR)‐1,3‐di­bromo‐6‐iso­propyl‐4,4a‐di­methyl‐1,2,3,4,5,6,7,8‐octa­hydro­naphthalen‐2‐one, C₁₅H₂₄Br₂O, has two independent mol­ecules in the asymmetric unit, which differ in the rotation of the iso­propyl group with respect to the main skeleton. The C—Br distances are in the range 1.950 (4)–1.960 (4) Å. Both independent molecules form zigzag chains, with very short intermolecular carbonyl–carbonyl interactions, having the perpendicular motif and O⋯C distances of 2.886 (6) and 2.898 (6) Å. These chains are flanked by intermolecular Br⋯Br interactions of distances in the range 4.067 (1)–4.218 (1) Å. The absolute configuration of the di­bromo derivative was determined, from which that of nootkatone was inferred.     

Precursors to dodecahedrane

The title compounds, (2R,2′′S,3b′S,4a′R,7b′S,8a′R)‐per­hydro­di­spiro­[furan‐2,3′‐di­cyclo­penta­[a,e]­pentalene‐7′,2′′‐furan]‐5,5′′‐dione, C₂₀H₂₆O₄, and (3aR,3bR,4aR,4bS,5aS,8aR,8bR,9aR,9bS,10aS)‐per­hydro­dipentaleno­[2,1‐a:2′,1′‐e]­pentalene‐1,6‐dione, C₂₀H₂₆O₂, are intermediates identified during the synthesis of dodecahedrane. Crystallographic studies have established the ring‐junction stereochemistry for these important intermediates. All the ring junctions are cis‐fused, and the molecular packing is stabilized by van der Waals interactions.     

Three ginkgolide hydrates from Ginkgo biloba L.: ginkgolide A monohydrate,ginkgolide C sesquihydrate and ginkgolide J dihydrate,all determined at 120 K

A low‐temperature structure of ginkgolide A monohydrate, (1R,3S,3aS,4R,6aR,7aR,7bR,8S,10aS,11aS)‐3‐(1,1‐dimethylethyl)‐hexa­hydro‐4,7b‐di­hydroxy‐8‐methyl‐9H‐1,7a‐epoxymethano‐1H,6aH‐cyclo­penta­[c]­furo­[2,3‐b]­furo­[3′,2′:3,4]­cyclopenta­[1,2‐d]­furan‐5,9,12(4H)‐trione monohydrate, C₂₀H₂₄O₉·H₂O, obtained from Mo Kα data, is a factor of three more precise than the previous room‐temperature determination. A refinement of the ginkgolide A monohydrate structure with Cu Kα data has allowed the assignment of the absolute configuration of the series of compounds. Ginkgolide C sesquihydrate, (1S,2R,3S,3aS,4R,6aR,7aR,7bR,8S,10aS,11S,11aR)‐3‐(1,1‐di­methyl­ethyl)‐hexa­hydro‐2,4,7b,11‐tetrahydroxy‐8‐methyl‐9H‐1,7a‐epoxy­methano‐1H,6aH‐cyclopenta­[c]­furo­[2,3‐b]­furo­[3′,2′:3,4]­cyclo­penta­[1,2‐d]­furan‐5,9,12(4H)‐trione sesquihydrate, C₂₀H₂₄O₁₁·1.5H₂O, has two independent diterpene mol­ecules, both of which exhibit intramolecular hydrogen bonding between OH groups. Ginkgolide J dihydrate, (1S,2R,3S,3aS,4R,6aR,7aR,7bR,8S,10aS,11aS)‐3‐(1,1‐di­methyl­ethyl)‐hexa­hydro‐2,4,7b‐tri­hydroxy‐8‐methyl‐9H‐1,7a‐epoxy­methano‐1H,6aH‐cyclo­penta­[c]­furo­[2,3‐b]furo[3′,2′:3,4]­cyclo­penta­[1,2‐d]­furan‐5,9,12(4H)‐trione dihydrate, C₂₀H₂₄O₁₀·2H₂O, has the same basic skeleton as the other ginkgolides, with its three OH groups having the same configurations as those in ginkgolide C. The conformations of the six five‐membered rings are quite similar across ­ginkgolides A–C and J, except for the A and F rings of ginkgolide A.     

Two new conformationally restricted 4,5‐dihydroxynorvaline analogues with a norbornane skeleton

The structures of two conformationally restricted 4,5‐di­hydroxy­norvaline analogues with a norbornane skeleton, namely methyl (1S,2S,3R,4R)‐2‐benz­amido‐3‐(1,2‐di­hydroxy­ethyl)­bi­cyclo[2.2.1]­heptane‐2‐carboxyl­ate, C₁₈H₂₃NO₅, and methyl (1R,2S,3R,4S)‐2‐benz­amido‐3‐(1,2‐di­hydroxy­ethyl)­bi­cyclo[2.2.1]­heptane‐2‐carboxyl­ate, C₁₈H₂₃NO₅, exhibit a conformation in the helical region of the ?,ψ map but their handedness is opposite. In both cases, the torsion angles (χ^1,1) giving the relative orientation of the 1,2‐di­hydroxy­ethyl group of the amino acid side chain and the benz­amide group of the peptide chain indicate that these groups adopt a nearly eclipsed conformation. Both compounds show a complex hydrogen‐bonding pattern.     

New electron‐deficient chiral phosphines: (4R,5R)‐1,3‐bis(trifluoromethanesulfonyl)perhydro‐1,3,2‐benzodiazaphosphol‐2‐yl] substituted amines

Three chiral electron‐deficient phosphine ligands, [(4R,15R)‐,3‐bis­(tri­fluoro­methane­sulfonyl)­per­hydro‐1,3,2‐benzodiazaphosphol‐2‐yl]­diethyl­amine, C₁₂H₂₀F₆N₃O₄PS₂, (IIIa), [(4R,5R)‐1,3‐bis­(tri­fluoro­methane­sulfonyl)­per­hydro‐1,3,2‐benzodi­aza­phosphol‐2‐yl]­di­methyl­amine, C₁₀H₁₆F₆N₃O₄PS₂, (IIIb), and bis­[(4R,5R)‐1,3‐bis­(tri­fluoro­methane­sulfonyl)­per­hydro‐1,3,2‐benzodi­aza­phosphol‐2‐yl]­methyl­amine, (IV), as the chloroform solvate, C₁₇H₂₃F₁₂N₅O₈P₂S₄·0.98CHCl₃, have been prepared from (1R,2R)‐N,N′‐bis­(tri­fluoro­methane­sulfonyl)‐1,2‐cyclo­hexane­di­amine and diethyl phosphor­amido­us dichloride, dimethyl phosphoramidous dichloride or methyl imidodi­phosphorus tetrachloride. The π‐acceptor abilities of these new types of ligands have been evaluated by X‐ray determination of the P—N bond lengths; it has been found that the most promising ligand is the bis­(phosphine) (IV).     

Preference for the Diels–Alder addition of dienes syn to the O atom in cross‐conjugated spiro­cyclic cyclo­hexadienones

In the Diels–Alder reaction, the preferred addition of dienes syn to the O atom in cross‐conjugated cyclo­hexadienones containing an oxa‐­spiro ring system is observed. The two structures reported here, namely rel‐(1R,4aR,9S,9aS,10R)‐4a,9,9a,10‐tetra­hydro‐9,10‐di­phenyl­spiro­[9,10‐epoxy­anthra­cene‐1(4H),2′‐oxiran]‐4‐one, C₂₇H₂₀O₃, and rel‐(1R,4aS,9R,9aS,10S)‐4a,9,9a,10‐tetra­hydro‐9,10‐di­phenyl­spiro­[9,10‐epoxy­anthracene‐1(4H),2′‐oxetane]‐4‐one, C₂₈H₂₂O₃, are the minor and sole products, respectively, of the reactions of di­phenyl­isobenzo­furan with two slightly different cyclo­hexadienones. These structures differ in the size of the oxa‐­spiro ring, by one C atom, and in the relative configuration at the spiro­cyclic ring C atom, leading to some minor conformational differences between the two compounds.     

Disappearance of intramolecular stacking due to one‐atom movement or increment of a `propyl­ene linker' in pyrazolo­[3,4‐d]­pyrimidine‐based ­flexible models

In the crystal structures of 4,6‐di­methyl­thio‐1‐[3‐(4,6‐di­methyl­thio‐2H‐pyra­zolo­[3,4‐d]­py­rimi­din‐2‐yl)­propyl]‐1H‐py­ra­­zolo­[3,4‐d]­py­rimi­dine, C₁₇H₂₀N₈S₄, and 1‐[4‐(4‐meth­oxy‐6‐methyl­thio‐1H‐pyra­zolo­[3,4‐d]py­rimi­din‐1‐yl)­butyl]‐5‐meth­yl‐6‐methyl­thio‐4,5‐di­hydro‐1H‐pyra­zolo­[3,4‐d]py­rimi­din‐4‐one, C₁₈H₂₂N₈O₂S₂, only intermolecular stacking due to aromatic π–π interactions between pyrazolo­[3,4‐d]­pyrimidinerings is present.     

Absolute configuration of (−)‐4‐(3,4‐di­chloro­phenyl)‐4‐(2‐pyridyl)­butanoic acid: essential information to determine crucial steric features of ­arpromidine‐type hist­amine H2 receptor agonists

The structural information gained from the study of the chiral building block (R)‐(?)‐4‐(3,4‐di­chloro­phenyl)‐4‐(2‐pyridyl)­butanoic acid–l ‐(?)‐ephedrine [methyl(1‐hydroxy‐1‐phenyl­prop‐2‐yl)ammon­ium 4‐(3,4‐di­chloro­phenyl)‐4‐(2‐pyrid­yl)but­an­oate], C₁₀H₁₆NO⁺·C₁₅H₁₂Cl₂NO₂^?, can be used to deduce the absolute configuration of highly potent arpromidine‐type hist­amine H₂ receptor agonists, as the chiral butanoic acid can be converted to (R)‐(?)‐3‐(3,4‐di­chloro­phenyl)‐3‐(2‐pyridyl)­propyl­amine and to the corresponding R‐configured arpromidine analogue.     

The diastereoisomers methyl 5‐(S)‐[2‐(R)/(S)‐methoxycarbonyl)‐2,3,4,5‐tetrahydropyrrol‐1‐ylcarbonyl]‐1‐(4‐methylphenyl)‐4,5‐dihydropyrazole‐3‐carboxylate

The title diastereoisomers, methyl 5‐(S)‐[2‐(S)‐methoxy­carbonyl)‐2,3,4,5‐tetra­hydro­pyrrol‐1‐yl­carbonyl]‐1‐(4‐methyl­phenyl)‐4,5‐di­hydro­pyrazole‐3‐carboxyl­ate and methyl 5‐(S)‐[2‐(R)‐methoxycarbonyl)‐2,3,4,5‐tetrahydropyrrol‐1‐ylcarbonyl]‐1‐(4‐methyl­phenyl)‐4,5‐di­hydro­pyrazole‐3‐carboxylate, both C₁₉H₂₃N₃O₅, have been studied in two crystalline forms. The first form, methyl 5‐(S)‐[2‐(S)‐methoxy­carbonyl)‐2,3,4,5‐tetrahydropyrrol‐1‐ylcarbonyl]‐1‐(4‐methylphenyl)‐4,5‐di­hydro­pyrazole‐3‐carboxyl­ate–methyl 5‐(S)‐[2‐(R)‐methoxy­carbonyl)‐2,3,4,5‐tetra­hydro­pyrrol‐1‐yl­carbonyl]‐1‐(4‐methylphenyl)‐4,5‐dihydropyrazole‐3‐carboxylate (1/1), 2(S),5(S)‐C₁₉H₂₃N₃O₅·2(R),5(S)‐C₁₉H₂₃N₃O₅, contains both S,S and S,R isomers, while the second, methyl 5‐(S)‐[2‐(S)‐methoxycarbonyl)‐2,3,4,5‐tetrahydro­pyrrol‐1‐ylcarbonyl]‐1‐(4‐methyl­phenyl)‐4,5‐di­hydro­pyrazole‐3‐carboxyl­ate, 2(S),5(S)‐C₁₉H₂₃N₃O₅, is the pure S,S isomer. The S,S isomers in the two structures show very similar geometries, the maximum difference being about 15° on one torsion angle. The differences between the S,S and S,R isomers, apart from those due to the inversion of one chiral centre, are more remarkable, and are partially due to a possible rotational disorder of the 2‐­(methoxycarbonyl)tetrahydropyrrole group.     

Two key chiral intermediates in a new 4‐hydroxy­isoleucine synthesis

We present the crystal and molecular structure of two key compounds of a new synthesis strategy for isomers of natural (2S,3R,4S)‐4‐hydroxyisoleucines, 2,3,5,6,7,8‐hexa­hydro‐3‐(1‐hydroxy‐1‐methyl‐2‐oxo­propyl)‐6,8‐methano‐7,7,8a‐tri­meth­yl‐5H‐1,4‐benzoxazin‐2‐one, C₁₆H₂₃NO₄, and 2,3,5,6,7,8‐hexa­hydro‐3‐(1‐methyl‐2‐oxo­propyl)‐6,8‐methano‐7,7,8a‐tri­meth­yl‐5H‐1,4‐benzoxazin‐2‐one, C₁₆H₂₃NO₃. A new optically pure chiral oxazinone auxiliary derived from (1R,2R,5R)‐2‐hydroxy­pinan‐3‐one was used.     

Azole. 45.

The three title compounds, namely (Z)‐1‐(4,5‐di­nitro­imidazol‐1‐yl)‐3‐morpholinopropan‐2‐one 2,4‐di­nitro­phenyl­hydrazone, C₁₆H₁₇N₉O₉, (IV), (Z)‐3‐morpholino‐1‐(4‐morpholino‐5‐nitro­imidazol‐1‐yl)propan‐2‐one 2,4‐di­nitro­phenyl­hydrazone, C₂₀H₂₅N₉O₈, (Va), and (E)‐3‐morpholino‐1‐(4‐morpholino‐5‐nitro­imidazol‐1‐yl)propan‐2‐one 2,4‐di­nitro­phenylhydra­zone tetra­hydro­furan solvate, C₂₀H₂₅N₉O₈·C₄H₈O, (Vb), have been prepared and their structures determined. In (IV), the C‐4 nitro group is nearly perpendicular to the imidazole ring and the C‐4—NO₂ bond length is comparable to the value for a normal single Csp²—NO₂ bond. In (IV), (Va) and (Vb), the C‐­5 nitro group deviates insignificantly from the imidazole plane and the C‐5—NO₂ bond length is far shorter in all three compounds than C‐4—NO₂ in (IV). In consequence, the C‐4 nitro group in (IV) is easily replaced by morpholine, while the C‐5 nitro group in (IV), (Va) and (Vb) shows an extraordinary stability on treatment with the amine. The E configuration in (Vb) is stabilized by a three‐centre hydrogen bond.     

Stereochemistry of two new polyfunctionalized gem‐dihalo­cyclo­propanes

The two new gem‐dihalogeno­cyclo­propanes (1′S,3R)‐3‐(2′,2′‐di­chloro‐1′‐methyl­cyclo­propyl)‐6‐oxoheptanoic acid, C₁₁H₁₆­Cl₂O₃, (2), and (1′S,3R)‐3‐(2′,2′‐di­bromo‐1′‐methyl­cyclo­propyl)‐6‐oxoheptanoic acid, C₁₁H₁₆Br₂O₃, (3), are isostructural. Both present two stereogenic centers at C1′ and C3. The absolute configuration was determined by X‐ray methods. The cyclo­propyl rings are unsymmetrical, the shortest bond being distal with respect to the alkyl‐substituted C atom.     

The absolute configuration of (2S,4S)‐ and (2R,4R)‐2‐tert‐butyl‐4‐methyl‐3‐(4‐tolyl­sulfon­yl)‐1,3‐oxazolidine‐4‐carbaldehyde

The title enanti­omorphic compounds, C₁₆H₂₃NO₄S, have been obtained in an enanti­omerically pure form by crystallization from a diastereomeric mixture either of (2S,4S)‐ and (2R,4S)‐ or of (2R,4R)‐ and (2S,4R)‐2‐tert‐butyl‐4‐methyl‐3‐(4‐tolyl­sulfon­yl)‐1,3‐oxazolidine‐4‐carbaldehyde. These mixtures were prepared by an aziridination rearrangement process starting with (S)‐ or (R)‐2‐tert‐butyl‐5‐methyl‐4H‐1,3‐dioxine. The crystal structures indicate an envelope conformation of the oxazolidine moiety for both compounds.     

(Z)‐2‐Methylbuten‐1‐yl(aryl)iodonium trifluoromethanesulfonates containing electron‐withdrawing groups on the aryl moiety

The crystal structures of [(Z)‐2‐methyl­but‐1‐en‐1‐yl]­[4‐(tri­fluoro­methyl)­phenyl]­iodo­nium tri­fluoro­methane­sulfonate, C₁₂H₁₃F₃I⁺·CF₃O₃S^?, (I), (3,5‐di­chloro­phenyl)­[(Z)‐2‐methyl­but‐1‐en‐1‐yl]­iodo­nium tri­fluoro­methane­sulfonate, C₁₁H₁₂­Cl₂I⁺·CF₃O₃S^?, (II), and bis{[3,5‐bis­(tri­fluoro­methyl)­phenyl][(Z)‐2‐methyl­but‐1‐en‐1‐yl]­iodo­nium} bis­(tri­fluoro­methane­sulfonate) di­chloro­methane solvate, 2C₁₃H₁₂F₆I⁺·­2CF₃­O₃S^?·CH₂Cl₂, (III), are described. Neither simple acyclic β,β‐di­alkyl‐substituted alkenyl­(aryl)­idonium salts nor a series containing electron‐deficient aryl rings have been described prior to this work. Compounds (I)–(III) were found to have distorted square‐planar geometries, with each I atom interacting with two tri­fluoro­methane­sulfonate counter‐ions.     

Diphenyl(2‐thioxo‐1,3‐dithiole‐4,5‐di­thiolato‐S,S′)plumbane at 295 K and diphenyl(2‐thioxo‐1,3‐dithiole‐4,5‐di­thiolato‐S,S′)stannane at 150 K

Molecules of di­phenyl(2‐thio­xo‐1,3‐di­thiole‐4,5‐di­thiol­ato‐S,S′)­plumbane, [Pb(C₃S₅)(C₆H₅)₂], are linked into sheets via two intermolecular Pb?S_thione interactions of 3.322 (4) and 3.827 (4) Å; the Pb centre has a distorted octahedral geometry. In contrast, mol­ecules of ­di­phenyl(2‐thio­xo‐1,3‐di­thiole‐4,5‐di­thiol­ato‐S,S′)­stannane, [Sn(C₃S₅)(C₆H₅)₂], are linked into chains via a single intermolecular Sn—S_thione interaction of 2.8174 (9) Å; the Sn centre has a distorted trigonal‐bipy­ramidal geometry.     

Two isomeric di­deoxy­nucleosides

We have synthesized two isomeric di­deoxy­nucleosides. 4(S)‐(6‐Amino‐9H‐purin‐9‐yl)‐3‐methyl­ene‐2,3,4,5‐tetra­hydrofuran‐2(S)‐yl­methanol, C₁₁H₁₃N₅O₂, is an analogue of the anti‐HIV compound (S,S)‐isodi­deoxy­adenosine (isoDDA) with an exocyclic methyl­ene group and is found to be anti‐HIV inactive. The solid‐state comformation is very similar to that of isoDDA. 4(S)‐(6‐Amino‐3H‐purin‐3‐yl)‐3‐methyl­ene‐2,3,4,5‐tetra­hydro­furan‐2(S)‐ylmethanol, C₁₁H₁₃N₅O₂, has an isomeric arrangement of the carbohydrate and base moieties, as confirmed by the crystal structure analysis. The asymmetric unit contains two independent mol­ecules that differ in conformations at the sugar moiety.     

Samaderin B and C from Samadera indica

Samaderin B, or (1R,2S,5R,5aR,7aS,11S,11aS,11bR,14S)‐1,7,7a,11,11a,11b‐hexa­hydro‐1,11‐di­hydroxy‐8,11a,14‐tri­methyl‐2H‐5a,2,5‐(methan­oxy­metheno)­naphth­[1,2‐d]­oxepine‐4,6,10(5H)‐trione, C₁₉H₂₂O₇, and samaderin C, or (1R,2S,5R,5aR,7aS,10S,11S,11aS,11bR,14S)‐7,7a,10,11,11a,11b‐hexa­hydro‐1,10,11‐tri­hydroxy‐8,11a,14‐tri­methyl‐2H‐5a,2,5‐(methan­oxy­metheno)­naphth­[1,2‐d]­oxepine‐4,6(1H,5H)‐dione, C₁₉H₂₄O₇, were isolated from the seed kernels of Samadera indica and were shown to exhibit antifeedant activity against Spodoptera litura third‐instar larvae. The replacement of the carbonyl group in samaderin B by a hydroxy group in samaderin C causes conformational changes at the substitution site, but the overall conformation is not affected; however, the compounds pack differently in the crystal lattice.     

A new optically pure half‐sandwich Cp–Ru diphosphine complex with a chiral metal centre, (S)‐Ru(η5‐C5H5)(EPHOS)Cl {EPHOS is (+)‐(1R,2S)‐2‐[(diphenylphosphino)methylamino]‐1‐phenylpropyl diphenylphosphinite}

The crystal structure of the title compound, chloro(η⁵‐cyclopenta­dienyl){(1R,2S)‐2‐[(di­phenyl­phosphino)­methyl­amino]‐1‐phenyl­propyl di­phenyl­phosphinite‐κ²P,P′}ruthenium(II), [Ru(C₅H₅)Cl(C₃₄H₃₃NOP₂)], is reported. The pseudo‐octa­hedral complex is chiral and the configuration at the Ru atom is S. The seven‐membered metallacycle adopts a boat‐like conformation.