Gas phase structures, energetics, and potential energy surfaces of disilacyclohexanes

The molecular structures of 1,4-, 1,3-, and 1,2-disilacyclohexanes (denoted as 14, 13, and 12, respectively) were investigated by means of gas electron diffraction (GED). Each molecule was found to possess a chair as the most stable conformation in the gas phase, the point group being C(2h), C(s), and C(2), respectively. Experimental GED structures are in good agreement with theoretical calculations (MP2/cc-pVTZ and B3LYP/cc-pVTZ). A qualitative ring strain analysis suggests 14 to be the most stable and 12 the least stable of the parent disilacyclohexanes. Relative energy calculations with the G4 model chemistry protocol, on the other hand, predict 13 to be the most stable isomer, 5.9 and 14.2 kcal/mol more stable than 14 and 12, respectively. The enhanced stability of 13 compared to 14 is in agreement with an analysis on endocyclic bond lengths and bond polarities. The heats of formation (G4 calculations) are predicted to be -12.3, -18.1, and -3.9 kcal/mol for 14, 13, and 12, respectively. The potential energy surface (PES) and the lowest energy path for the chair-to-chair inversion have been calculated for each isomer. In addition to the two chair forms in each case and some half-chair or sofa-like transition states (four in the case of 14, and two in the case of 13), there are two twist forms found as stationary points on the PES of 14, six twist and six boat forms on the PES of 13, and four twist and six boat forms on the PES of 12.     

Structural, electronic, and chemical properties of multiply iodized aluminum clusters

The electronic structure, stability, and reactivity of iodized aluminum clusters, which have been investigated via reactivity studies, are examined by first-principles gradient corrected density functional calculations. The observed behavior of Al13I(x)- and Al14I(x)- clusters is shown to indicate that for x < or = 8, they consist of compact Al13- and Al14++ cores, respectively, demonstrating that they behave as halogen- or alkaline earth-like superatoms. For x > 8, the Al cores assume a cagelike structure associated with the charging of the cores. The observed mass spectra of the reacted clusters reveal that Al13I(x)- species are more stable for even x while Al14I(x)- exhibit enhanced stability for odd x(x > or = 3). It is shown that these observations are linked to the formation and filling of "active sites," demonstrating a novel chemistry of superatoms.     

Structural changes of Pd13 upon charging and oxidation/reduction

First-principle generalized gradient corrected density functional calculations have been performed to study the stability of cationic and anionic Pd(13) (+∕-), and neutral Pd(13)O(2) clusters. It is found that while cationic Pd(13) (+) favors a C(s) geometry similar to the neutral Pd(13), both anionic Pd(13)(-) and neutral Pd(13)O(2) favor a compact ~I(h) structure. A detailed analysis of the electronic structure shows that the stabilization of the delocalized 1P and 2P cluster orbitals, and the hybridization of the 1D orbitals with the oxygen atomic p orbitals play an important role in the energetic ordering of C(s) and ~I(h) isomers. A structural oscillation is predicted during an oxidation/reduction cycle of Pd(13) in which small energy barriers between 0.3 and 0.4 eV are involved.     

Synthesis and stability of a homologous series of triynol natural products and their analogues

A series of polyyne natural products 1, 13, and 31 and analogues 14, 21, and 22 are synthesized in six steps. The key step is a Fritsch-Buttenberg-Wiechell rearrangement in which a triyne framework is formed from the appropriate dibromoolefin precursor. Terminal conjugated triynes 13 and 14 are obtained as highly unstable products that rapidly decompose under ambient conditions. The stability of triynols increases via either the addition of methylene units (i.e., 6 --> 31 --> 1) or addition of terminal substituents (i.e., 13 --> 21 or 31).     

Photoreduction of bacteriorhodopsin Schiff base at low humidity. A study with C13=C14 nonisomerizable artificial pigments

The retinal protonated Schiff base of bacteriorhodopsin is photoreactive to reducing agents such as NaBH4. In the present work we have studied the effect of different protein hydration levels on the photoreductive reaction, as well as the consequences of preventing isomerization around the critical C13=C14 retinal double bond. It was revealed that the rate of light-induced NaBH4 reaction can be fitted to three phases, between 100 and 87%, from 87 to 35% and below 35% relative humidities (r.h.). The three phases are attributed to three protein regions characterized by different water affinities. Furthermore, it is shown that the PSB reduction reaction is light catalyzed even in artificial pigments derived from retinal analogs, in which isomerization around the C13=C14 double bond is prevented. It is suggested that the protein experiences light-induced conformational alterations that are not associated with C13=C14 double bond isomerization. In the 13-cis locked pigment the rate of reduction reaction is affected by r.h. levels only below 35%. The relatively low r.h. required for withdrawing water from the protein is attributed to the increased protein-water affinity in this specific pigment.     

Investigation on the feasibility of using an Ulbricht sphere for the absolute calibration of an ICP or other source at specific wavelengths

The short term and long term stability of an Ulbricht sphere was investigated by comparing its radiation at four Balmer wavelengths with those of two Sylvania projector lamps. A slight positive trend in the radiation intensity of the Ulbricht sphere was observed. This was attributed to a change in the molecular structure of the paint used to cover the inside of the sphere. However, the radiance varied less than 3% for 14 h burning time. The uncertainty in the primary calibration of the Tungsten standard lamp was given as ±3% in the wavelength range 400–600 nm. It was hence concluded that the sphere is suitable for spectral calibration purposes for a period of 14 h operational time without being recalibrated.     

First principles study of the stability and electronic structure of the icosahedral La13, La(-1) (13), and La(+1) (13) clusters

The structural stability and electronic-structure of icosahedral La(13), La(-1) (13), and La(+1) (13) clusters have been studied by DMOL cluster method based on density-functional theory. The ground state of all-electron with relativity results is shown to be a distorted D(2h) icosahedron by the Jahn-Teller effect. However, the binding energies of D(3d) and D(5d) are very close to that of the D(2h) structure for La(13), La(-1) (13), and La(+1) (13) clusters. The effective core potential results show that the true ground state is D(5d) structure. The clusters have small magnetic moments and the symmetry of cluster is an important factor in determining the magnetic moments of the clusters. The effects of interatomic spacing and coordination on atomic magnetic moment are discussed. Further, 5d electrons dominate the hybrid orbitals below the Fermi level in the neutral cluster and contribute the main spin of clusters.     

Pentagon Stability in Cycloarsanes

The orbital phase theory leads to the prediction that the saturated arsenic cyclic molecules prefer pentagons, which is substantiated by the negative strain energy of cyclic As 5 H 5 . The puckered five-membered arsenic ring is an important structural unit for the pentagon stability. Possible structures and conformers of polycycloarsanes As 8 H 4 , As 11 H 3 , "roof-like" and "cage-like" As 12 H 4 , As 13 H 3 , As 14 H 2 , and As 15 H 3 with relatively low strain energies were predicted due to many puckered pentagon units in them. The low stability of the dodecahedron As 20 with 12 planar pentagon units was suggested by the high strain energy.     

Macromolecular transformations of polyphenyl imidates into N-phenyl-substituted polyaramides and poly(N-benzoylamines)

A possibility for the transformation of polyphenyl imidates, obtained by polycondensation of bisphenols with imidoyl chlorides of mono- and dicarboxylic acids, into N-phenyl-substituted aromatic polyamides and poly(N-benzoylamines) has been discovered. Such a rearrangement resulted from heating at 260–340 °C for 13–17 h, whereas in diphenyl ether solution at 240 °C for 10–14 h. The polymers synthesized are soluble in organic solvents and possess high stability against thermooxidative destruction. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1223–1227, June, 2008.     

Physical and electrochemical properties of N-alkyl-N-methylpyrrolidinium bis(fluorosulfonyl)imide ionic liquids: PY13FSI and PY14FSI

Two ionic liquids based upon N-alkyl-N-methylpyrrolidinium cations (PY(1R)(+)) (R=3 for propyl or 4 for butyl) and the bis(fluorosulfonyl)imide (FSI(-)), N(SO2F)2(-), anion have been extensively characterized. The ionic conductivity and viscosity of these materials are found to be among the highest and lowest, respectively, reported for aprotic ionic liquids. Both ionic liquids crystallize readily on cooling and undergo several solid-solid phase transitions on heating prior to melting. PY13FSI and PY14FSI are found to melt at -9 and -18 degrees C, respectively. The thermal stability of PY13FSI and PY14FSI is notably lower than for the analogous salts with the bis(trifluoromethanesulfonyl)imide (TFSI(-)), N(SO2CF3)2(-), anion. Both ionic liquids have a relatively wide electrochemical stability window of approximately 5 V.     

Comparative investigation of ruthenium-based metathesis catalysts bearing N-heterocyclic carbene (NHC) ligands

Exchange of one PCy3 unit of the classical Grubbs catalyst 1 by N-heterocyclic carbene (NHC) ligands leads to "second-generation" metathesis catalysts of superior reactivity and increased stability. Several complexes of this type have been prepared and fully characterized, six of them by X-ray crystallography. These include the unique chelate complexes 13 and 14 in which the NHC- and the Ru-CR entities are tethered to form a metallacycle. A particularly favorable design feature is that the reactivity of such catalysts can be easily adjusted by changing the electronic and steric properties of the NHC ligands. The catalytic activity also strongly depends on the solvent used; NMR investigations provide a tentative explanation of this effect. Applications of the "second-generation" catalysts to ring closing alkene metathesis and intramolecular enyne cycloisomerization reactions provide insights into their catalytic performance. From these comparative studies it is deduced that no single catalyst is optimal for different types of applications. The search for the most reactive catalyst for a specific transformation is facilitated by IR thermography allowing a rapid and semi-quantitative ranking among a given set of catalysts.     

The carbene reactivity surface: a classification

A new two-dimensional classification of singlet carbenes based on the difference in reactivity of their insertion reactions into the C-H bonds of acetonitrile and isobutane is presented. This classification combines the stability and the philicity of divalent species. Until now all of the experimentally based philicity scales are based on the addition to alkenes. Moreover, a new terminology for describing the reactivity of carbenes is introduced. Among the alkyl carbenes, acetyl carbene (2) and cyclopentadienylidene are shown as highly reactive electrophilic carbenes, whereas the other alkylidenes and alkenylidenes investigated are all less active than 2 and more nucleophilic. The stabilized-nucleophilic bicyclo[2.1.1]hex-2-en-5-ylidene (13) possesses a stability similar to that of cyclic alkyl amino carbene (CAAC) 18 and aminophosphoniocarbene 7. Strong hydrogen bridging is found between a C-H bond of acetonitrile and the nucleophilic carbenes 13 and 14.     

Three dimensional models of Cu(2+)-Aβ(1-16) complexes from computational approaches

Elucidation of the coordination of metal ions to Aβ is essential to understand their role in its aggregation and to rationally design new chelators with potential therapeutic applications in Alzheimer disease. Because of that, in the last 10 years several studies have focused their attention in determining the coordination properties of Cu(2+) interacting with Aβ. However, more important than characterizing the first coordination sphere of the metal is the determination of the whole Cu(2+)-Aβ structure. In this study, we combine homology modeling (HM) techniques with quantum mechanics based approaches (QM) to determine plausible three-dimensional models for Cu(2+)-Aβ(1-16) with three histidines in their coordination sphere. We considered both ε and δ coordination of histidines 6, 13, and 14 as well as the coordination of different possible candidates containing oxygen as fourth ligand (Asp1, Glu3, Asp7, Glu11, and CO(Ala2)). Among the 32 models that enclose COO(-), the lowest energy structures correspond to [O(E3),N(δ)(H6),N(ε)(H13),N(ε)(H14)] (1), [O(E3),N(δ)(H6),N(δ)(H13),N(δ)(H14)] (2), and [O(D7),N(ε)(H6),N(δ)(H13),N(δ)(H14)] (3). The most stable model containing CO(Ala2) as fourth ligand in the Cu(2+) coordination sphere is [O(c)(A2),N(ε)(H6),N(δ)(H13),N(ε)(H14)] (4). An estimation of the relative stability between Glu3 (1) and CO(Ala2) (4) coordinated complexes seems to indicate that the preference for the latter coordination may be due to solvent effects. The present results also show the relationship between the peptidic and metallic moieties in defining the overall geometry of the complex and illustrate that the final stability of the complexes results from a balance between the metal coordination site and amyloid folding upon complexation.     

Ammonia elimination from protonated nucleobases and related synthetic substrates

The results are reported of mass-spectrometric studies of the nucleobases adenine 1h (1, R = H), guanine 2h, and cytosine 3h. The protonated nucleobases are generated by electrospray ionization of adenosine 1r (1, R = ribose), guanosine 2r, and deoxycytidine 3d (3, R = deoxyribose) and their fragmentations were studied with tandem mass spectrometry. In contrast to previous EI-MS studies of the nucleobases, NH(3) elimination does present a major path for the fragmentations of the ions [1h + H](+), [2h + H](+), and [3h + H](+). The ion [2h + H - NH(3)](+) also was generated from the acyclic precursor 5-cyanoamino-4-oxomethylene-dihydroimidazole 13h and from the thioether derivative 14h of 2h (NH(2) replaced by MeS). The analyses of the modes of initial fragmentation is supported by density functional theoretical studies. Conjugate acids 15-55 were studied to determine site preferences for the protonations of 1h, 2h, 3h, 13h, and 14h. The proton affinity of the amino group hardly ever is the substrate's best protonation site, and possible mechanisms for NH(3) elimination are discussed in which the amino group serves as the dissociative protonation site. The results provide semi-direct experimental evidence for the existence of the pyrimidine ring-opened cations that we had proposed on the basis of theoretical studies as intermediates in nitrosative nucleobase deamination.     

O2-2,4-二硝基苯基偶氮二醇盐类化合物的设计、合成及抗肿瘤活性

以O2-2,4-二硝基苯基偶氮二醇盐(PABA/NO)为先导化合物,选择适当的仲胺作为偶氮二醇盐中相应的胺片段,并用碳氮键取代苯环5位的碳氧酯键,设计合成了化合物2a,2b和4a~4j,以期获得活性更强且稳定性好的抗肿瘤药物.目标化合物经1H NMR,13C NMR及HRMS进行了结构确证.生物活性测试结果表明,目标化合物可不同程度地抑制结肠癌HCT-116细胞的增殖,其中化合物4h的活性最强(IC50=7.945±0.421 μmol/L),优于PABA/NO(IC50=12.134±0.675 μmol/L).NO释放实验结果表明,此类化合物的NO释放量与细胞毒性呈正相关.化合物4h在HCT-116细胞中释放NO的量最多,约是正常细胞的2倍.此外,化合物4h在大鼠血浆中的体外稳定性显著优于PABA/NO,值得进一步研究.     

Potentiometric stripping analysis (PSA) for monitoring of antimony in samples of vegetation from a mining area

A potentiometric stripping analysis (PSA) method has been developed and checked for the fast and reliable determination of antimony in vegetation samples of Cistus ladanifer from a mining area in Badajoz, Southwest Spain. The method, modified from previous PSA methods for Sb in environmental samples, is based on dry ashing of the homogenized leaves, dissolution in hydrochloric acid, and PSA analysis on a mercury film plated on to a glassy carbon disk electrode. The influence of experimental variables such as the deposition potential, the deposition time, the signal stability and the calibration parameters, has been investigated. The method has been compared with an independent technique (instrumental neutron activation analysis) by analysis of standards and reference materials and comparison of the results. As a result of automation of the PSA equipment, the proposed method enables unattended analysis of 20 digested samples in a total time of 2 h, thus providing a useful tool for Sb monitoring of a large number of samples. Received: 13 December 2000 / 14 February 2001 / Accepted: 26 February 2001     

Sensitivity and precision of the 13C-breath test

Sensitivity and precision of the 13C-breath test were assessed by examining a couple of limiting factors caused by the sensitivity of the instrument used for 13CO2 analysis, endogenous fluctuation of 13CO2 abundance, and the residual CO2 in sample storing tubes, vacutainers, etc. For 13CO2 analysis, a mass spectrometer equipped with a dual inlet, a dual collector, and an automated pressure matching system, was used. 15 ml vacutainers were used for sample storage. Endogenous fluctuation of 13CO2 abundance, however, was measured by putting the breath samples directly into the evacuated CO2 purification system, instead of using vacutainers. Endogenous fluctuation (S.D. = 0.202%) was the most significant limiting factor, compared with instrumental limitation (0.085%), or with influence of the residual CO2 (0.136%). Consequently, the sensitivity of the 13C-breath test was figured out to be 0.52%. This sensitivity is about 1,000 times lower than that of 14C-breath test. The precision was linearly dependent on 13C increase from basal 13C observed after administration of 13C enriched compounds, delta 13C, and was determined to be expressed as 1.94 delta 13C.     

7-N-(mercaptoalkyl)mitomycins: implications of cyclization for drug function

The Kyowa Hakko Kogyo and Bristol-Myers Squibb companies reported that select mitomycin C(7) aminoethylene disulfides displayed improved pharmacological profiles compared with mitomycin C (1). Mechanisms have been advanced for these mitomycins that differ from 1. Central to many of these hypotheses is the intermediate generation of 7-N-(2-mercaptoethyl)mitomycin C (5). Thiol 5 has been neither isolated nor characterized. Two efficient methods were developed for mitomycin (porfiromycin) C(7)-substituted thiols. In the first method, the thiol was produced by a thiol-mediated disulfide exchange process using an activated mixed mitomycin disulfide. In the second route, the thiol was generated by base-mediated cleavage of a porfiromycin C(7)-substituted thiol ester. We selected four thiols, 7-N-(2-mercaptoethyl)mitomycin C (5), 7-N-(2-mercaptoethyl)porfiromycin (12), 7-N-(2-mercapto-2-methylpropyl)mitomycin C (13), and 7-N-(3-mercaptopropyl)porfiromycin (14), for study. Thiols 5 and 12-14 differed in the composition of the alkyl linker that bridged the thiol with the mitomycin (porfiromycin) C(7) amino substituent. Thiol generation was documented by HPLC and spectroscopic studies and by thiol-trapping experiments. The linker affected the structure of the thiol species and the stability of the thiol. We observed that thiols 5 and 12 existed largely as their cyclic isomers. Evidence is presented that cyclization predominantly occurred at the mitomycin C(7) position. Correspondingly, alkyl linker substitution (13) or extension of the linker to three carbons (14) led to enhanced thiol stability and the predominant formation of the free thiol species. The dominant reaction of thiols 5 and 12-14 or their isomers was dimerization, and we found no evidence that thiol formation led to mitosene production and aziridine ring-opening. These findings indicated that thiol generation was not sufficient for mitomycin ring activation. The potential pharmacological advantages of mitomycin C(7) aminoethylene disulfides compared with 1 is discussed in light of the observed thiol cyclization pathway.     

Ground state, growth, and electronic properties of small lanthanum clusters

The DMol cluster method based on density-functional theory has been employed to study the structural stability and electronic structure of La(n) (n=2-14) clusters. The ground states have been found out for lanthanum clusters. The Jahn-Teller effect plays an important role in this process because there are many isomers near the ground state. The magnetism is not sensitive to interatomic spacing when the change of interatomic spacing is in a small range. Lanthanum clusters grow in an icosahedral pattern. The results of the mean binding energy, of the second derivative of binding energy, and of the formation energy show strong odd-even alternation and that 7- and 13-atom clusters are magic. Further, the HOMO-LUMO gap, the mean nearest bond lengths, and the mean magnetic moments suggest that the convergence to bulk is slow and it shows an oscillatory behavior for small lanthanum clusters.     

Regioselective formation of beta-alkyl-alpha-phenyliridabenzenes via unsymmetrical 3-vinylcyclopropenes: probing steric and electronic influences by varying the alkyl ring substituent

The synthesis of unsymmetrical (Z)-1-alkyl-3-(2-iodovinyl)-2-phenyl-1-cyclopropenes (R=Me (8 a), Et (8 b), iPr (8 c), and tBu (8 d)) and their reactions with Vaska's complex [Ir(CO)Cl(PPh3)2] and its trimethylphosphine analogue [Ir(CO)Cl(PMe3)2] were investigated. Iridabenzvalene (13/20), iridabenzene (14/21), and/or eta(5)-cyclopentadienyliridium complexes (15/22) were obtained in modest yields and were fully characterized by spectroscopic means. X-ray structural data was secured for iridabenzvalene 13 d and iridabenzenes 14 a,b,d. Whereas iridabenzenes 14 a-c were stable at 75 degrees C for 48 h, 14 d, which possesses a bulky tBu group, rearranged cleanly to cyclopentadienyliridium 15 d at 50 degrees C over 15 h and displayed first-order kinetics. The influence of the alkyl substituent on the mechanisms of iridacycle generation, isomerization, and iridabenzene regioselectivity is discussed.