二甲醚电氧化增强电化学表面积的研究(英)

0IntroductionFuel cells em ploying polym er(e.g.,N afion m em-branes)as the electrolyte are receiving increasing at-tention.The m em brane-electrode assem bly(M EA),com prising of a proton conducting m em brane sand-wiched between tw o gas diffusion elect…     

A fast pairwise evaluation of molecular surface area

A fast and general analytical approach was developed for the calculation of the approximate van der Waals and solvent-accessible surface areas. The method is based on three basic ideas: the use of the Lorentz transformation formula, a rigid-geometry approximation, and a single fitting parameter that can be refitted on the fly during a simulation. The Lorentz transformation equation is used for the summation of the areas of an atom buried by its neighboring contacting atoms, and implies that a sum of the buried pairwise areas cannot be larger than the surface area of the isolated spherical atom itself. In a rigid-geometry approximation we numerically calculate and keep constant the surface of each atom buried by the atoms involved in 1-2 and 1-3 interactions. Only the contributions from the nonbonded atoms (1-4 and higher interactions) are considered in terms of the pairwise approximation. The accuracy and speed of the method is competitive with other pairwise algorithms. A major strength of the method is the ease of parametrization.     

New Investigation of Potential Acting on an Electron in a Molecule to Draw Molecular Faces

A new approach to calculate the potential acting on an electron in a molecule(PAEM) has been established for drawing the molecular face(MF) of a macromolecule, according to the classic point charge model and the atom-bond electronegativity equalization method(ABEEMσπ) for one electron in a molecule. We introduced a dynamic charge distribution from the view of a local electron movement in a molecule based on the new approach, and as further direct evidence, we calculated some physical quantities using the original ab initio method and the new method to verify the accuracy of the method, such as the boundary distance(BD), molecular face surface area(MFSA) and molecular reactivities indicated by the MFs for a variety of organic molecules. All the results by the new method are in agreement with the results by ab initio method.     

冲洗色谱特征点法（ECP）测定5A分子筛的比表面积

介绍了冲洗色谱特征点法（ＥＣＰ）测定５Ａ分子筛的比表面积，并用Ｌａｎｇｍｕｉｒ吸附等温方程代替传统的ＢＥＴ方程拟合计算比表面积。用该法测定５Ａ分子筛及其失效和再生后的比表面积，取得满意的结果，并与热脱附法对比，测定结果无显著性差异，表明该法测定５Ａ分子筛比表面积简单可行。     

Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations

Continuing advances in computer hardware and software are permitting atomic-resolution molecular simulations for longer time scales and on larger systems. Despite these advances, routinely performing atomistic simulations with explicit water for even small proteins, which reach the folding time of such proteins, remains intractable for the foreseeable future. An implicit approximation of the solvent environment using a solvent accessible surface area (SASA) term in a molecular mechanics potential function allows exclusion of the explicit water molecules in protein simulations. This reduces the number of particles by approximately an order of magnitude. We present a fast and acceptably accurate approximate all-atom SASA method parameterized using a set of folded and heat-denatured conformations of globular proteins. The parameters are shown to be transferable to folded and heat-denatured conformations for another set of proteins. Calculation of the approximate SASA and the associated derivatives with respect to atomic positions for a 4644 atom protein requires only 1/11th the CPU time required for calculation of the nonbonded interactions for this system. On a per atom basis, this algorithm is three times faster than the fastest previously published approximate SASA method and achieves the same level of accuracy.     

Molecular Dynamics Simulations and Steered Molecular Dynamics Simulations of Glabridin Bound to Wild Type and V30A Mutant Transthyretin: Ligand-linked Perturbation of Tertiary Conformation

Transthyretin(TTR), as a tetrameric protein, functions as a neuroprotector. The native TTR homotetramer dissociates into dimers and monomers. Dimers and monomers self-assemble into amyloid fibrils, and this process can lead to some diseases. Native TTR homotetramer is a widely accepted model for TTR amyloid formation. In this study, simulations using molecular dynamics(MD) and steered MD(SMD) were performed to explore the mechanisms for glabridin(Glab), a specific inhibitor for TTR binding, for V30A mutant and wild-type(WT) TTR. MD simulation results indicate that, compared with Glab binding to WT and V30A mutant, the WT TTR could lead to the collapse of β-strands from Ser52 to His56 at chain A. This phenomenon facilitated the easy dissociation of chains A and C. Calculations of the binding free energy between the two chains showed that the V30A-Glab TTR complex displayed a lower binding energy than other systems(WT TTR and WT-Glab TTR). Then, SMD simulation was performed to explore the unbinding pathway for Glab through the WT and V30A mutant TTR. The results show that Lys15(chain A) produced a hydrogen bond with Glab at the force peak via the WT TTR tunnel. Meanwhile, in the V30A TTR mutant, the hydrogen bond between Lys15(chain A) and Glab was broken at the force peak. This condition was beneficial for Glab to be taken off from the protein. Our theoretical results will be useful in designing a new specific inhibitor of TTR protein to control the TTR homotetramer dissociation.     

(2-羟基-3-丁氧基)丙基-羧甲基壳聚糖的合成及表面性质

(2-羟基-3-丁氧基)丙基-羧甲基壳聚糖的合成及表面性质;壳聚糖衍生物; (羟基丁氧基)丙基-羧甲基壳聚糖;表面活性;表面压     

Real-time analysis of enzymatic surface-initiated polymerization using surface plasmon resonance (SPR)

The kinetics of enzymatic surface-initiated polymerization of PHB on gold surface has been examined by SPR and the resultant polymer layers characterized by AFM and FT-IR spectrometry. The immobilized enzyme catalyzed surface-initiated polymerization of 3HB-CoA, resulting in the formation of a polymer brush on the surface. The rate of polymer growth from the surface was monitored by SPR in real-time. Polymer growth as measured by the increase in the resonance angle showed no apparent lag phase during the polymerization reaction. SPR analysis also revealed that the thickness of the polymer film could be controlled by varying the initial enzyme density on the surface. The average thicknesses of the PHB film after polymerization reaction were 95, 45 and 15 nm for the surfaces that were treated with 0.5, 0.3 and 0.1*10(-6) M of enzyme, respectively. The binding of PHA synthase at different concentration to the mixed SAMs and subsequent polymerization.     

Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy

The generalized Born/surface area (GB/SA) continuum model for solvation free energy is a fast and accurate alternative to using discrete water molecules in molecular simulations of solvated systems. However, computational studies of large solvated molecular systems such as enzyme-ligand complexes can still be computationally expensive even with continuum solvation methods simply because of the large number of atoms in the solute molecules. Because in such systems often only a relatively small portion of the system such as the ligand binding site is under study, it becomes less attractive to calculate energies and derivatives for all atoms in the system. To curtail computation while still maintaining high energetic accuracy, atoms distant from the site of interest are often frozen; that is, their coordinates are made invariant. Such frozen atoms do not require energetic and derivative updates during the course of a simulation. Herein we describe methodology and results for applying the frozen atom approach to both the generalized Born (GB) and the solvent accessible surface area (SASA) parts of the GB/SA continuum model for solvation free energy. For strictly pairwise energetic terms, such as the Coulombic and van-der-Waals energies, contributions from pairs of frozen atoms can be ignored. This leaves energetic differences unaffected for conformations that vary only in the positions of nonfrozen atoms. Due to the nonlocal nature of the GB analytical form, however, excluding such pairs from a GB calculation leads to unacceptable inaccuracies. To apply a frozen-atom scheme to GB calculations, a buffer region within the frozen-atom zone is generated based on a user-definable cutoff distance from the nonfrozen atoms. Certain pairwise interactions between frozen atoms in the buffer region are retained in the GB computation. This allows high accuracy in conformational GB comparisons to be maintained while achieving significant savings in computational time compared to the full (nonfrozen) calculation. A similar approach for using a buffer region of frozen atoms is taken for the SASA calculation. The SASA calculation is local in nature, and thus exact SASA energies are maintained. With a buffer region of 8 A for the frozen-atom cases, excellent agreement in differences in energies for three different conformations of cytochrome P450 with a bound camphor ligand are obtained with respect to the nonfrozen cases. For various minimization protocols, simulations run 2 to 10.5 times faster and memory usage is reduced by a factor of 1.5 to 5. Application of the frozen atom method for GB/SA calculations thus can render computationally tractable biologically and medically important simulations such as those used to study ligand-receptor binding conformations and energies in a solvated environment.     

力场/溶剂水模型对EGFRvⅢ抗原-MR1(scFv)抗体复合物的MM-PBSA计算精度的影响与实验验证

以表皮生长因子Ⅲ型突变体(EGFRvⅢ)抗原多肽与其抗体(MR1)及其人源化突变体的复合物结构为出发点,采用分子动力学中的6种常用力场及3种常用溶剂水模型,分别对上述抗原-抗体复合物进行100ns的分子动力学模拟与分子力学和连续介质模型计算自由能(MM-PBSA),并在实验上利用等温滴定量热(ITC)仪测定了抗原和抗体相互作用的热力学参数.通过在结构变化、能量变化及野生型与突变体比较等几个方面进行综合分析,给出了最佳的计算模型.对不同力场及水模型计算精度等相关问题进行了探讨.     

Surface Structure and Stereocomplex Formation of Enantiomeric Polylactide Blends Using Poly(dimethyl siloxane) as a Probe Polymer

In the stereocomplex between enantiomeric poly(l-lactide) (l-PLA) and poly(d-lactide), crystallites formed as a result of stereocomplexation, equimolar l- and d-lactide unit sequences are packed side by side. The stereocomplex exhibits a melting temperature higher by about 50 °C than that of each homopolymer. In this study, we attempt to obtain further insight into the stereocomplex-induced surface structure of enantiomeric PLA blend films. The design of the blend systems is based on principles of surface segregation of multicomponent polymeric systems with a low surface energy, triblock copolymer (l-PLA-b-PDMS-b-l-PLA) of l-PLA and poly-(dimethyl siloxane). (l-PLA-b-PDMS-b-l-PLA/l-PLA) blend films showed the surface segregation of PDMS, regardless of blend composition while the surface composition of PDMS in the (l-PLA-b-PDMS-b-l-PLA/d-PLA) blend films was strongly depended on blend composition or a degree of complexation. These results are likely due to strong interaction between d- and l-lactide unit sequences, which prevents the surface segregation of PDMS.     

用可见激光在聚(氨酯-酰亚胺)表面制备周期性亚微米结构

由于含有偶氮苯染料侧基,聚(氨酯-酰亚胺)(PUI)对532nm的光具有较强的吸收.采用该波长的可见偏振脉冲激光(Nd∶YAG激光器的倍频输出),在PUI薄膜表面制备了激光诱导周期性表面微结构(LIPSS).研究了染料引入方式以及染料侧基含量对微结构形成过程的影响,讨论了入射角、激光脉冲数、激光脉宽等激光辐射条件对LIPSS形成过程以及对微结构形貌和周期性的影响.     

Poly(tetrafluoroethylene) Film Surface Functionalization with 2‐Bromoisobutyryl Bromide as Initiator for Surface‐Initiated Atom‐Transfer Radical Polymerization

A PTFE film surface was modified using a combined plasma/ozone‐activated process. The modified PTFE film was further reacted with 2‐bromoisobutyryl bromide to incorporate ATRP initiators in the film surface. Surface‐initiated ATRP on PTFE films was performed using sodium styrene sulfate as a monomer. The poly(sodium styrene sulfate) chain length grafted onto PTFE film surfaces increased with increasing reaction time. Analysis using X‐ray photoelectron spectroscopy, scanning electron microscopy, atomic force microscopy and a contact angle analyzer gave evidence of the success of the PTFE surface modifications.

     

Surface characterization and London dispersive surface free energy of functionalized single-walled carbon nanotubes with a blend of polytetrafluoroethylene by inverse gas chromatography

The SWCNTs and SWCNT-polytetrafluoroethylene (PTFE) blend were prepared by using simple reaction mixture in the presence of chromosorb (SiO₂). Surface morphology of SWCNTs and (SWCNT-PTFE) blend was characterized by Fourier transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD), thermal gravimetric analysis (TGA), transmission electron microscopy (TEM), scanning electron microscopy (SEM), and surface BET analysis. In addition, the surface thermodynamic properties of n-alkanes and polar probe net retention volumes are measured by inverse gas chromatography (IGC). The London dispersive surface free energy values were found to be decreased linearly with increase of temperature. The specific component of the surface free energy of adsorption for the polar probes was obtained using the Donnet-Park method. The surface character “S” value (K_b/K_a) at SWCNTs was found to be 0.74, and SWCNT-PTFE blend surface character value was found to be 0.86. This result demonstrates that the (SWCNT-PTFE) blend surface contains relatively more acidic sites then that of SWCNT surface. Therefore, the IGC results provide useful complementary information on the (SWCNT-PTFE) blend surface.     

Mixed‐monolayer of N‐hydroxysuccinimide‐terminated cross‐linker and short alkanethiol to improve the efficiency of biomolecule binding for biosensing

The goal of this study was to use a novel surface chemistry for modifying gold surfaces to decrease the steric hindrance, minimize the nonspecific bindings while providing directed immobilization of proteins for advancing the transducer property and to provide a biosensing platform for surface plasmon resonance (SPR) applications. Mixed self‐assembled monolayers (mSAMs) were prepared using 3,3′‐Dithiodipropionic acid di (N‐hydroxysuccinimide ester) (DSP) and 6‐mercapto‐1‐hexanol (MCH) and the selected model proteins bovine serum albumin (BSA) and lysozyme were tested for binding efficiency. First, binding of these two proteins at constant concentration to different DSP:MCH mSAMs were compared to deduce the best molar ratio for forming mSAM using a continuous flow system coupled to SPR. Coincidently the maximum protein binding DSP:MCH mSAM were the same for both proteins. The change in Response Unit (∆RU) signal due to protein binding between DSP SAM and maximum protein binding DSP:MCH mSAM for lysozyme binding was more in comparison to BSA binding. Second, the effect of BSA and lysozyme concentration on binding efficiency to maximum protein binding DSP:MCH mSAM were compared and discussed. Lysozyme and BSA were shown to reach saturations on the same monolayer at concentrations of 5.7x10⁻⁵ and 8.96x10⁻⁶ [M] respectively, hence the molar ratio for limit concentrations is 6:1. The DSP SAM, MCH SAM, and DSP:MCH mSAMs where maximum and minimum protein binding occurs were also characterized with XPS and Attenuated total reflectance‐Fourier transform infrared (ATR‐FTIR) spectroscopy. Blank gold surface, maximum protein binding DSP:MCH mSAM and BSA immobilized DSP:MCH mSAM on gold surface were also investigated utilizing tapping mode AFM.     

QCM和SAW传感器的原理及其在现场检测中的应用

压电化学传感器是一类重要的质量敏感型检测器,由于具有体积小、灵敏度高、响应时间快等优越性而具有极好的应用前景.本文介绍了体声波化学传感器(QCM)和表面声波化学传感器(SAW)的原理,概述了最近几年的应用情况及提高灵敏度的方法,并对其发展趋势进行了展望.