Spectres de masse des composés organiques. 5e communication. Perte de méthane et d'éthylène à partir des ions butyle

The loss of methane and ethylene in the mass-spectrometric fragmentation of different isomeric butyl ions which originate from butyl halides has been studied. The different carbon atoms in n-butyl are already equivalent after 10^?7 s, whereas the statistical distribution of the hydrogen atoms within the molecule can only be observed for the metastable peaks. A protonated cyclobutane structure is proposed as an intermediate product in the fragmentation of the n-butyl ion. The fragmentation of this model has been simulated by a computer. This allows prediction as to the time-scale of fragmentation. The comparison of this model fragmentation with that of isomeric butyl ions shows that, even in the decay of the tertiary butyl ion, the formation of the proposed rearranged cyclic structure competes favorably with the direct fragmentation.     

The mass spectrometric fragmentation of n-alkanes

The fragmentation of n-hexane, n-nonane and n-tetradecane under electron impact has been investigated, using ¹³C labelled compounds. The mechanism of the formation of the alkyl radical ions is quantitatively explained by using a method of calculation developed in an earlier publication for n-heptane. It is assumed that these ions are formed either by a direct C-C bond cleaveage or by a secondary olefin loss from an alkyl radical ion. In the latter case the probability for a particular carbon to be lost in the neutral fragment is assumed to be random. The probability for a direct cleavage to an alkyl ion is about 80% for an ion containing at least half of the number of carbon atoms of the molecular ion and 15% for the smaller ions. The [M? H]⁺ ion seems to be a special case not yet clearly understood. Former results about the loss of methyl from the molecular ion are confirmed.     

The Mass Spectrometric Fragmentation of 1-Heptyl Ions Derived from the Corresponding Halides

We have studied the fragmentation of 1-heptyl ions resulting from the loss of halogen from the corresponding halide ions. All positions had been labelled with D and ¹³C, some positions even doubly labelled. The main processes are the loss of propene and, to a lesser extent, ethylene as neutral fragments. All carbon atoms have a definite probability of being lost with the olefin, those which are terminal having the smallest chance; this precludes an important contribution by direct scission. The source-and the metastable-decomposition produced much the same isotopic distribution in the fragments. The terminal hydrogen atoms also have a small chance of being rearranged, whereas those at non-terminal positions show extensive scrambling. It seems that the fragmentation proceeds via cyclic structures which are rapidly attained and equilibrated amongst each other, but our results do not warrant suggestion of a detailed model.     

Isomerization of hydrocarbon ions. VIII—The electron impact induced decomposition of n-dodecane

The literature on the mass spectrometry of ²H and ¹³C labelled higher alkanes is reviewed and the decomposition behaviour of both the molecular and the fragment ions of n-dodecane, n-dodecane-1, 12-[¹³C₂] and n-dodecane-1,1,1,12,12,12-[²H₆] studied with special emphasis on metastable decompositions. It is shown that the elimination of alkane molecules and alkyl radicals from the n-dodecane molecular ion occurs primarily by simple splitting of the C? C bond. In addition, both small alkane molecule and alkyl radicals are eliminated with low probability from centreal parts of the molecular ion. The alkane elimination is less specific than the alkyl elimination. The methyl elimination shows an exceptionally high non-specificity, but is of negligible abundance in the 70 e V electron impact spectrum. The metastable ion spectra suggest, but do not prove unambiguously, that those small alkyl ions (with up to four carbon atoms) originating directly from the molecular ion, may be formed both by direct cleavage of the terminal groups and from central parts of the molecular ion. However, the majority of the small alkyl fragment ions in the 70 eV spectrum are formed by secondary decomposition explaining their apparent non-specific formation. The strikingly different fragmentation behaviour of even electron, [C_nH_2n+1]⁺, and odd electron fragment ions, results from differences in the product stabilities. Using collisional activation and metastable ion spectra it is shown that the odd electron fragments have the structure of the linear alkene (most probably the 1-alkene) molecular ion. In contrast to the molecular ions, alkyl fragment ions decompose with complicated skeletal rearrangements, which lead to substantial, but not complete, carbon randomization. The terminal hydrogen atoms, however, show little scrambling.     

High resolution mass spectrometry—V: Cyclic esters of aliphatic α-hydroxy acids

The main fragmentation sequences of glycollide and its homologues are initiated by fission of a CO? O bond, leading to the formation of fragment ions of low, m/e, such as [R¹CO]⁺ and [CR¹R²CCO]⁺. When a hydrogen atom is present on a ring carbon atom, 1,3 hydrogen migration occurs to produce [CHR²OH]⁺. In case where a ring carbon atom carries an alkylchain ? C₂H₅, a McLafferty rearrangement occurs with the adjacent carbonyl group. When both ring carbon atoms are dimethyl substituted, a 1,4 hydrogen migration must be invoked to account for the observed fragmentation sequence.     

Ion–molecule reactions and dissociation of glycols in a quadrupole ion trap mass spectrometer: Evidence of intramolecular interactions

Polyethylene glycols react with CH₃OCH₂⁺ ions from dimethyl ether to form [M + 13]⁺ products. The [M + 13]⁺ ions are stabilized by intramolecular interactions involving the internal ether oxygen atoms and the terminal methylene group. Collisionally activated dissociation (CAD), including MSⁿ and deuterium labeling experiments show that fragmentation reactions involving intramolecular cyclization are predominant. Scrambling of hydrogen and deuterium atoms in the ion-molecule reaction products is not indicated. The CAD spectra of the [M + 13]⁺ ions provide unambiguous assignment of the glycol size.     

The mass spectrometric fragmentation of n-heptane

The electron impact fragmentation of n-heptane has been investigated using ¹³C labelled derivatives. A mechanism is proposed for the loss of alkyl radicals where the cleavage of a C? C bond is coupled with the rearrangement of a hydrogen atom, thus yielding a secondary alkyl ion that eventually fragments further by a subsequent loss of olefin. For alkyl ions with less than six carbon atoms this consecutive pathway is in competition with formation directly from the molecular ion. The consecutive pathway contributes about 15% to the intensity of the alkyl ions with four and five carbon atoms and 80% for smaller ions. The electron energy dependence was studied.     

Fragmentation of collisionally activated hydroxyphenoxide anions in the gas phase

Low-energy collisionally activated dissociation of O-deprotonated dihydroxybenzenes (catechol, resorcinol, hydroquinone) in the gas phase causes both fragmentation to form [C₆H₄O₂]^– ions by loss of the remaining oxygen-bound hydrogen atom and intramolecular hydrogen atom migration from O to C. The rearranged anions then undergo ring-cleavage reactions which are different in each case. Both catechol and hydroquinone produce fragments which are the result of the loss of two carbon atoms and both oxygen atoms but the proposed mechanisms are different. Resorcinol also produces a fragment which derives from the loss of carbon dioxide. For this process a mechanism is proposed which involves a 6-methylpyranone anion intermediate.     

Characterisation of selected drugs with nitrogen-containing saturated ring structures by use of electrospray ionisation with ion-trap mass spectrometry

The electrospray ionisation–ion-trap mass spectrometry (ESI–MS ⁿ ) of selected drugs with nitrogen-containing saturated ring structures has been investigated. Sequential product-ion fragmentation experiments (MS ⁿ ) have been performed to elucidate degradation pathways for the [M+H]⁺ ions and their predominant fragment ions. These MS ⁿ experiments result in characteristic fragmentations in which functional groups are generally cleaved from the ring systems as neutral molecules such as H₂O, amines, alkenes, esters, carboxylic acids, etc. When such a nitrogen-containing drug molecule also contains a functional group, such as an ester, that on liberation as a neutral molecule has a significantly lower –H _f° value than that of the corresponding amine then the former is preferentially liberated. Furthermore, when an aromatic entity is present in these drug molecules together with the nitrogen-containing saturated ring structure fragmentation of the latter ring occurs with the former, predictably, being resistant to fragmentation. The structures of fragment ions proposed for ESI–MS ⁿ can be supported by electrospray ionisation–quadrupole time-of-flight mass spectrometry (ESI–QTOFMS). The data presented in this paper therefore provide useful information on the structure of these heterocyclic compounds which could be used to characterise unknown drug compounds isolated from natural sources, for example.     

Unidirectional triple and double hydrogen rearrangement reactions in the radical cations of γ-arylalkanols

A novel fragmentation reaction accompanied by the unidirectional migration of three hydrogen atoms has been found in the radical cations of γ-arylpropanols with electron-donating substituents in the para position. This triple hydrogen (3H) rearrangement reaction is the dominant fragmentation channel of the long-lived molecular ions of trans-2-(4′-dimethylaminobenzyl)-l-indanol, 2, but it occurs also in simpler γ-arylpropanol ions. Deuterium labelling of 2 reveals that the three hydrogen atoms originate with extraordinarily high specificity from the C(l), C(2) and O positions of the alcohol moiety. Cis- and 3′-substituted isomers do not undergo this reaction. Along with the 3H rearrangement reaction a unidirectional double hydrogen (2H) rearrangement reaction takes place independently and with less specificity in the trans-2-(4′-X-benzyl)-l-indanol ions 1⁺˙ and 2⁺˙. No hydrogen exchange occurs during the 3H and 2H rearrangement reactions. Mechanistic alternatives of these unusual fragmentation reactions are discussed; the experimental evidence strongly favours pathways via several intermediate ion–neutral complexes.     

Specific and random fragmentations in the mass spectra of some neopentyl compounds

The mass spectra of neopentyl alcohol, bromide and chloride and some ¹³C and ²H labelled analogues have been studied. Most fragmentations of the molecular ions of these compounds occur by simple bond cleavages and do not involve rearrangement before fragmentation. We propose that in the [M ? CH₃]⁺ fragment ions, seven of the eight hydrogen atoms and all four carbon atoms are involved in randomisation when an ethylene molecule is ejected. The eighth hydrogen atom (which comes from a methyl group) is probably associated with the heteroatom. The neopentylcation, observed only in the mass spectrum of the bromide, fragments mainly by loss of an ethylene molecule, also containing randomly selected hydrogen and carbon atoms. The [C₄H₇]⁺ ion also was observed to undergo complete atom scrambling.     

Fragmentation of deprotonated cyclic dipeptides by electrospray ionization mass spectrometry

The fragmentation pathways of deprotonated cyclic dipeptides have been studied by electrospray ionization multi‐stage mass spectrometry (ESI‐MSⁿ) in negative mode. The results showed that the fragmentation pathways of deprotonated cyclic dipeptides depended significantly on the different substituents, the side chains of amino acid residues at the diketopiperazine ring. In the spectra of deprotonated cyclic dipeptides, the ion [M? H? substituent radical]^? was firstly observed in the ESI mode. The characteristic fragment ions [M? H? substituent radical]^? and [M? H? (substituent? H)]^? could be used as the symbols of particular cyclic dipeptides. The hydrogen/deuterium (H/D) exchange experiment, the high‐resolution mass spectrometry (Q‐TOF) and theoretical calculations were used to rationalize the proposed fragmentation pathways and to verify the differences between the fragmentation pathways. The relative Gibbs free energies (ΔG) of the product ions and possible fragmentation pathways were estimated using the B3LYP/6–31++G(d, p) model. The results have some potential applications in the structural elucidation and interpretation of the mass spectra of homologous compounds and will enrich the gas‐phase ESI‐MS ion chemistry of cyclic dipeptides. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis and characterisation of a novel polymeric Cd complex,catena-(μ-thio)[bis(N-phenylthiourea] bis(dimethylsulphoxide)dichlorocadmium(II)

A new Cd(II) complex, [CdL(DMSO)₂Cl₂] _n , L?=?bis(N-phenylthiourea), has been synthesized and its crystal structure determined from single-crystal diffraction data. The compound is orthorhombic, space group Pna2₁, with a?=?18.728(1), b?=?12.2601(8), c?=?22.879(1)?Å, V?=?5253.3(6)?ų. L acts as an exobidentate neutral ligand and Cd is octahedral, being bonded to two S atoms, two terminal Cl ions and two DMSO solvent molecules. The structure is that of a one-dimensional polymer, with chains running parallel to the b axis. Polymeric chains are stabilized by N–H…Cl hydrogen bonding, while intermolecular S…O contacts connect the chains. Thermal decomposition of the complex starts at 120°C by desolvation and is continuous over the recorded temperature range.     

Investigation of the relative stability of positive alkali halide cluster ions generated by fast atom bombardment

The stabilities of alkali halide cluster ions [M(MX)_n]⁺ (M ? Li, Na, K, Rb, Cs; X ? F, Cl, Br, I) have been studied by measuring the fragment ion yields following dissociation of the ions in the second field free region of a ZAB-2F mass spectrometer. Extractable cluster ions were observed for certain values of n. It was found that the stabilities of the neutral fragment species formed are also of importance in determining the fragmentation rates. Possible configurations of M and X in the stable ions are discussed.     

Use of liquid chromatography/tandem mass spectrometry and online databases for identification of phosphocholines and lysophosphatidylcholines in human red blood cells

In this work a systematic strategy integrating liquid chromatography/tandem mass spectrometry (LC/MS/MS) and online databases was developed to identify phosphocholines (PC) and lysophosphatidylcholines (LPC) in human red blood cells (RBCs). First of all, the neutral loss scan of 59 and the precursor ion scan of m/z 184 were performed to find out the possible lipids with phosphocholine head‐group structure in RBCs. The acquired [M+H]⁺ and [M+Na]⁺ adduct ions were then identified online using the Human Metabolome Database (HMDB) and the LIPID MAPS, which were then further confirmed by their MS/MS fragmentation. Based on the comparison of chemical structures of the detected PC and LPC with their corresponding MS/MS fragmentation pathways, several new diagnostic fragments or fragmentation pathway were found. These include, (1) the neutral losses of 183 could be used as a diagnostic fragmentation to discriminate PC and LPC; (2) product ions at m/z 104 could be used to distinguish LPC and their sn‐2 isomers; (3) fragment ions at m/z 184 are characteristic fragmentation that could be used for discrimination of sodiated ions [M+Na]⁺ and protonated ions [M+H]⁺, especially for co‐eluted PC or LPC with a molecular weight difference of 22. The structures of the above‐mentioned fragment ions were confirmed by quadrupole time‐of‐flight (Q‐TOF) MS. Furthermore, a PC and LPC focused LC/MS semi‐quantification approach was also developed and validated. This approach could be useful for future lipidomic study. Copyright © 2009 John Wiley & Sons, Ltd.     

A new hydrated ammonium hydroxy­borate, (NH4)2[B10O14(OH)4]·H2O

The structure of a new synthetic compound, di­ammonium tetra­hydroxy­deca­borate monohydrate, has been determined by single‐crystal X‐ray diffraction. It crystallizes in triclinic space group and all atoms occupy general sites. The title compound is composed of [B₁₀O₁₅(OH)₄]⁴⁻ ions as the fundamental building blocks, and these are linked end‐to‐end by sharing two common O atoms, thus producing infinite chains of composition [B₁₀O₁₄(OH)₄]_n^2n–. These chains are linked by hydrogen bonds, thus forming borate sheets. Water mol­ecules and ammonium ions between these sheets connect adjacent sheets via hydrogen bonds.     

The mass spectrum of 1-(2-thienyl) hexane-1-13C

The mass spectrum of 1-(2-thienyl) hexane-1-¹³C is reported. The principal fragmentation routes ofthe parent ion are delineated. Beta cleavage of the alkyl chain predominates, and the label retention indicates that the alpha carbon atom remains with the charged ring moiety. A substantial part of the m/e 97 ion undergoes a ring expansion to a six membered ring. A small amount of alpha cleavage of the alkyl chain occurs with the expected loss of the label. Further fragmentation of the ions from initial alpha or beta cleavage produces similar fragment ions. It is noted that many of the neutral particles lost in the formation of the fragment ions are typical of those encountered in the alkylbenzenes or other aromatic ion systems.     

Electron bombardment induced fragmentation of size selected neutral (D2O) n clusters

The fragmentation behaviour of size selected neutral (D₂O) _n clusters withn4 after ionization with 70 eV electrons is subject of this work. Size selection by scattering the cluster beam from a He target beam in combination with a quadrupole mass filter and time resolved measurements at specific laboratory angles enables us to determine the neutral precursor masses of the detected ions. The measured fragment pattern is dominated by deuterated ions of the form (D₂O) _n–x D⁺ withx1. The dimer fragmentation which leads with a probability of 62.5% to the D₃O⁺ ion and with 37.5% to D₂O⁺ can be explained by fast intracluster ion-molecule reactions of charged monomer fragments reacting with the partner molecule. For larger clusters the fragmentation process can be rationalised by the creation of an initially highly excited D₃O⁺ (D₂O) _x complex which is stabilized by evaporating additional monomer units with the main fragment channel (D₂O)D⁺ forn=3 and (D₂O)₂D⁺ forn=4. With increasing cluster size an increasing tendency of evaporation of more than one water monomer unit has been observed.     

The renaissance of high-energy CID for structural elucidation of complex lipids: MALDI-TOF/RTOF-MS of alkali cationized triacylglycerols

Triacylglycerols were analyzed as cationized species (Li⁺, Na⁺, K⁺) by high-energy CID at 20 keV collisions utilizing MALDI-TOF/RTOF mass spectrometry. Precursor ions, based on [M+Li]⁺-adduct ions exhibited incomplete fragmentation in the high and low m/z region whereas [M+K]⁺-adducts did not show useful fragmentation. Only sodiated precursor ions yielded product ion spectra with structurally diagnostic product ions across the whole m/z range. The high m/z region of the CID spectra is dominated by abundant charge-remote fragmentation of the fatty acid substituents. In favorable cases also positions of double bonds or of hydroxy groups of the fatty acid alkyl chains could be determined. A-type product ions represent the end products of these charge-remote fragmentations. B- and C-type product ions yield the fatty acid composition of individual triacylglycerol species based on loss of either one neutral fatty acid or one sodium carboxylate residue, respectively. Product ions allowing fatty acid substituent positional determination were present in the low m/z range enabling identification of either the sn-1/sn-3 substituents (E-, F-, and G-type ions) or the sn-2 substituent (J-type ion). These findings were demonstrated with synthetic triacylglycerols and plant oils such as cocoa butter, olive oil, and castor bean oil. Typical features of 20 keV CID spectra of sodiated triacylglycerols obtained by MALDI-TOF/RTOF MS were an even distribution of product ions over the entire m/z range and a mass accuracy of ±0.1 to 0.2 u. One limitation of the application of this technique is mainly the insufficient precursor ion gating after MS1 (gating window at 4 u) of species separated by 2 u.     

Collisional fragmentation of Ar@C60

The fragmentation patterns resulting from collisions between (Ar@C₆₀)⁺ or (Ar@C₆₀)⁻ ions and H₂, He, CH₄, Ne, Ar and Kr target gases have been measured. The ion-source material Ar@C₆₀ was synthesized by heating C₆₀ under 3000 atm of argon gas, leading to a 10⁻³ concentration of endohedral fullerenes. The fragmentation spectra (charged molecules only) are dominated by positive ions both when positive or negative endohedrals break up. Endohedral fragment ions Ar@C_n⁺ (48n60) as well as all carbon fragments are observed. For collisions involving (Ar@C₆₀)⁻, ejection of the Ar atom together with two electrons, without permanently damaging the fullerene cage, is a prominent reaction channel, indicating that a ‘window' or a deformation in the form of e.g. a large hole, through which the argon atoms can exit, is opened during the collision.