X-ray structure and NMR assignment of 4-methoxy-4′-methylthio-3,3′-diquinolinyl sulfidea

The title compound (C₂₀H₁₆N₂OS₂) is monoclinic, witha=7.786(3).,b=13.252(3),c=17.162(4) Å, =99.16(3)° and space groupP2₁/n. Two quinoline moieties are nearly perpendicular to each other (112.9(2)°). Both methoxy and methylthio groups are trans-orientated with the respect to the C(3)–S(1)–C(13) plane. Two pairs of the heteroatoms in ortho-positions are in very close contact. The conformation of the molecule explains an unusual¹H NMR spectrum     

Crystal and molecular structure of chloramphenicol analog: 2-amino-4-methoxy-2′,2′-dichloroacetophenone

The crystal and molecular structure of the title compound has been determined from diffractometric data usingMo K radiation. The crystals are orthorhombic, space groupP2₁2₁2₁, witha=12.052(3),b=11.901(2),c=6.976(1) Å andZ=4. The structure was solved by the heavy-atom method and refined by full-matrix least-squares to a finalR value of 0.039 with 1096 observed reflections. The molecule is is almost planar. The acetyl group and the phenyl ring are strongly conjugated, the corresponding dihedral angle being 3.3(2)°. The structure is stabilized by an intramolecular N(1)-H(N)1O(l) hydrogen bond.     

X-ray structure and NMR assignment of 3,3′-dimethylthio-4,4′-diquinolinyl sulfide

The title compound (C₂₀H₁₆N₂S₃) is triclinic, witha=9.494(3)b=9.890(3),c=19.456(5)Å,a=90.26(3)°,°=100.47(3)°, =99.18(3)°,Z=4 and space groupP¯1. The structure was solved by direct methods and refined toR=0.045 for 6076 reflections. There are two nonequivalent molecules in the unit cell. Two pairs of sulfur atoms in ortho-positions remain in very close contact. The S-methyl groups are nearly coplanar to the quinoline moieties and turned to the orthoposition, 2. CP MAS spectrum shows two conformers in the solid state but¹H and¹³C NMR spectra in CDCl₃ solution show rapid equilibrium of the conformers giving rise to average NMR data.Part XX in the series of Azinyl Sulfides.     

Synthesis and crystal structure of 7-ethoxyl-4′-hydroxyisoflavone

7-Ethoxyl-4-hydroxyisoflavone was prepared and its crystal structure was examined by X-ray diffraction. Crystallization of the title compound occurs in the monoclinic, space group P2(1)/c with a = 11.144(2) Å, b = 10.209(1) Å, c = 13.191(2) Å, = 113.43(1) and Z = 4. The molecular structure of title compound consists of a benzopyranone moiety, a phenyl moiety, a hydroxyl and an ethoxyl group. The benzopyranone ring is not coplanar with the phenyl ring, the dihedral angle being 46.75. The ethoxyl group is nearly coplanar with its corresponding ring with the torsion angle 175.23(2). Three kinds of hydrogen bond and two kinds of aromatic stacking interaction link the title compounds into a three-dimensional networking structure.     

Crystal and molecular structure of 2-(2′-chloro-5′-nitrostyryl)benzoselenazole

The title compound C₁₅H₉ClN₂O₂Se (nsbse) is orthorhombic, witha=6.823(2),b=7.860(2),c=26.349(5) Å,Z=4,D _x =1.709,(MoK)=28.3 cm^–1,F(000)=720,T=298K in space groupP2₁2₁2₁. The structure was solved by heavy atom and Fourier methods and refined toR=0.045 for 1095 unique observed reflections. The molecule is almost planar, with a dihedral angle of 4.8(2)° between the benzoselenazole and phenyl rings. The C-Se-C angle in the selenazole ring is very small, 84.6(4)°, while the C-N-C angle in that ring is 113.7(7)°.     

Synthesis and crystal structure of N,N′-dicyclohexylimidazolium hexafluorophosphate

N,N-dicyclohexylimidazolium hexafluorophosphate was prepared and its structure was determined by X-ray diffraction. The compound crystallizes in the orthorhombic space group Pbca, with the cell dimensions of a = 14.620(3) Å, b = 15.097(3) Å, c = 16.128(3) Å, V = 3559.4(12) ų, and D _calc. = 1.412 mg/m³ for Z = 8. The structure was solved by direct methods and refined to R value of 0.041. In the solid state, PF₆ ^– anion and imidazolium cation form strong hydrogen bonds, which fix the relative orientation between cations and anions.     

X-ray structure of 4-chloro-3′-methylthio-3,4′-diquinolinyl sulfide

The title compound crystallizes in a monoclinic space groupP2₁/n witha=9.524(3),b=6.782(2),c=26.217(6) Å, =92.52(4)°. The values of the Cl...S and S...S distances are well below the sum of the van der Waals radii of the heteroatoms. Also, the Cl–C–C(S) and (Cl)C–C–S bond angles are below the standard 120°. This indicates a attractive interaction between both pairs ofortho-situated heteroatoms.Part XXXVIII in the Series of Azinyl Sulfides.     

Synthesis and structure determination of 3α-triphenylstannyl-cholest-5-ene

3-Triphenylstannylcholest-5-ene (1) has been synthesised and its molecular structure has been determined by single crystal X-ray diffraction. Refinement in the triclinic space groupP1 witha=7.805(6),b=7.862(5),c=32.351(10)Å, =90.87(8), =94.77(8) and =101.15(4)^o converged atR=0.063. One of the two crystallographically independent molecules in the unit cell has a patially disordered side chain. The bond lengths and valency angles about tin indicate some steric hindrance due to the proximity of one of the phenyl rings with the B ring of the steroid nucleus.     

X-ray crystal structure of 2-hydroxy-2′-(1,4-bisoxo-6-hexanol)-1,1′-biphenyl

The X-ray crystal structure of 2-hydroxy-2-(1,4-bisoxo-6-hexanol)-1,1-biphenyl, 3, is presented. This molecule crystallizes in the monoclinic space group P2₁/n (a = 9.440(2), b = 12.679(3), c = 11.679(3) Å = 94.60(2)° V = 1382.5(5) ų; Z = 4). One of the unique features of the X-ray structure of 3 is the intramolecular hydrogen bonding. The hydrogens of the phenolic and hydroxy groups occupies bridging positions via hydrogen bonding to an ether oxygen (O₁) and a phenolic oxygen (O₄), respectively. This hydrogen bonding does not affect the interplanar angle between phenyl rings (49.34°), which is in the range expected for ortho-disubstituted biphenyl compounds. The hydrogen bonding of this type explains why it is difficult to alkylate both phenoxy groups of 2,2-biphenol with tetrahydropyranyl protected 2-(2-chloroethoxy)ethanol.     

Synthesis and crystal structure of 1-(1′,3′-dimethyl-5′-chloropyrazol-4′-carbonyl′-3-(2′-chlorophenyl)-5-amino-4-cyanopyrazole

The title compound 1-(1,3-dimethyl-5-chloropyrazol-4-carbonyl)-3-(2-chlorophenyl)-5-amino-4-cyanopyrazole (C₁₆H₁₂Cl₂N₆O) has been synthesized and characterized by X-ray diffraction: Triclinic, space group P1, with a = 8.6712(8) Å, b = 9.5091(10) Å, c = 11.2170(11) Å = 71.531(2)°, = 84.683(2)°, = 74.099(2)° Z = 2; V = 843.7(14) ų. C(10), O(1), C(11), and N(2) atoms are coplanar with the average deviation of 0.0071 Å, which form 11.03° and 43.93° dihedral angles with pyrazole planes (I) and (II), respectively.     

Crystal and molecular structure of 2′,4′-dimethoxyflavone

C₁₇H₁₄O₄,M _r =282.3, triclinic,P-1,a=8.469(3),b=8.516(2),c=20.425(8)Å,=84.95(3),=81.98(3), =70.47(2)°,V=1373(13)ų,Z=4,D _x =1.365 g cm^–3, (MoK )=0.71069 Å,=0.91 cm^–1,F(000)=592,T=294K,R=0.038 for 3577 observed reflections (F>3 (F)). The asymmetric unit is composed of two molecules. These two molecules, which are in planar conformations, differ in 4-methoxyl group orientation. Short intramolecular contacts are found between the -benzopyran portion and the dimethoxyphenyl ring.     

X-ray structure of 3′,4-dimethylthio-3,4′-diquinolinyl sulfide

The title compound (C₂₀H₁₆N₂S₃) is monoclinic, witha=31.550(9),b=8.504(3),c=14.745(3) Å,=114.14(3)°,Z=8 and space groupC2/c. The structure was solved by direct methods and refined toR=0.038 for 3012 reflections. The molecule exists in an uncommon conformation. Two quinoline moieties are nearly perpendicular to each other (80.9(3)°). Both methylthio groups have different orientation (the 4-SCH₃ group is nearly perpendicular and the 3-SCH₃ is nearly coplanar to the quinoline moieties). Two pairs of sulfur atoms in ortho-positions remain in very close contact. The conformation of the molecule explains an unusual¹H NMR spectrum.Part XVI in the series of Azinyl Sulfides.     

Molecular and crystal structure of 4′-cyanobenzo-15-crown-5

The crystal structure of 4′-cyanobenzo-15-crown-5 is determined by X-ray diffraction. The crystallographic parameters of single crystals are as follows: a = 40.479(6) Å, b = 8.821(2) Å, c = 8.484(2) Å, β = 93.94(2)°, V = 3022.2 ų, Z = 8, d _calcd = 1.27 g/cm³, and space group C2/c. The structure is solved by the direct method and refined by the least-squares procedure to R = 0.068. The conformation of the macrocycle in 4′-cyano-B15C5 is described by the a-a-g ^? -a-a-g-g ^? -a-a-g-a-g-a-a-s sequence of torsion angles.     

X-ray structure of 3,3′-bis(4-methylthioquinolinyl) sulfide

The structure of the title compound has been solved by direct methods, and refined to anR value of 0.035 for 1613 reflections. Both methyl carbon atoms deviate from the plane of the pyridine ring by 1.505(3) Å in opposite directions. Both sulfur atoms S(1) and S(2) remain in short contact, at 3.247(1) Å. The two pyridine rings are inclined at 61.4(2)° to each other.Part XIV in the series of Azinyl Sulfides.     

Synthesis and crystal structure of 2-trifluoromethyl-1-[(2′-1H-tetrazole-5-yl-biphenyl-4-yl) methyl]benzimidazole

The crystal structure of 2-trifluoromethyl-1-[(2'-1H-tetrazle-5-yl-biphenyl-4-yl) methyl]-benzimidazole and a methylene chloride have been determined by X-ray crystallography. The compound crystallizes in the monoclinic space group, P2 ₁/n with cell dimensions a = 10.931(2) Å, b = 12.31(3) Å, c = 17.901(4) Å, = 102.45(3)°, V = 2352.9(8) ų, D _calc = 1.427 g/cm³, Z = 4, = 0.324 mm^–1, and F(000) = 1032, and its structure was refined to R ₁ = 0.0663 and wR ₂ = 0.1668 for 1910 observed reflections I > 2(I)). Intermolecular hydrogen bonds were identified between the N and H atoms of intermolecular benzimidazole group and tetrazole group.     

Crystal and molecular structure of 1,1′-ferrocene-dicarbaldehyde

The crystal and molecular structure of 1,1-ferrocene-dicarbaldehyde 1 is reported. Crystal data for 1: monoclinic, space group P2₁/n, a = 5.876(1), b = 11.349(1), c = 29.460(3) Å, = 95.067(2)°, V = 1956.9(3) ų, and D _c = 1.64 g/cm³, for Z = 8. The complex crystallizes such that two molecules are located in the asymmetric unit in which the complexes display different degrees of twisting of the cyclopentadienyl (Cp) rings and formyl substituents about the Cp—Fe—Cp and Cp—COH axes, respectively. The molecule self-assembles in the solid state to form a 2D layered structure held together by - interactions and C—H···O hydrogen bonds.     

Synthesis and Structure of 1-Chlorosulfonyl-2-(4′-Nitrophenoxy)-5-Methylbenzene

Abstract  Diphenyl ethers are structural elements found in medicinally useful antibiotics such as vancomycin as well as in biological toxins in the environment such as dioxins. The purpose of this paper is to report the synthesis and characterization of the previously unreported 1-chlorosulfonyl-2-(4′-nitrophenoxy)-5-methylbenzene, a trisubstituted diphenyl ether derivative. ¹H NMR (CDCl₃) δ 2.45 (3H, methyl₅, s), 7.07 (1H, H₄, d, J ~8.27 Hz), 7.13 (2H, H_2′, H_6′, d, J ~9.0 Hz), 7.54 (1H, H₃, d, J ~8.28 Hz), 7.87 (1H, H₆, s), 8.22 (2H, H_3′, H_5′, J ~9 Hz); ¹³C NMR (CDCl₃) δ 20.7, 118.2, 121.9, 126.0, 129.8, 135.2, 135.8, 137.8, 143.8, 150.3, 161.4. An X-ray analysis has provided valuable insight into the effect of steric factors on the three dimensional shape of this compound which serves as a useful advanced intermediate in the synthesis of these biologically active molecules. A multistep synthesis of this molecule has been designed by retrosynthetic analysis as part of an ongoing program aimed at a function-oriented, multi-step economical synthesis of vancomycin lead antibiotics. Crystals are triclinic, space group P-1, a = 7.6537(15), b = 8.976(2), c = 11.050(2) ?, α = 67.645(11), β = 79.735(11), γ = 87.798(10)°, V = 690.5(2) ?³, Z = 2. Graphical Abstract  The synthesis and characterization of the previously unreported trisubstituted diphenyl ether derivative are reported. The phenyl rings form a dihedral angle of 64.49(4)° and the chlorosulfonyl group has a C–C–S–Cl torsion angle of 62.95(11)°.      

Crystal structure of 2,5-cyclohexadien-4-one-spiro-3′-(2′-methylthio-5′,5′-dimethyl-1′-pyrroline)

The crystal structure of the pyrrole derivative 2,5-cyclohexadien-4-one-spiro-3′-(2′-methylthio-5′,5′-dimethyl-1′-pyrroline) is determined by X-ray diffraction. Two independent molecules have similar structures and close geometric parameters but differ in configuration of the pyrrole ring and orientation of the thiomethyl group with respect to the pyrrole ring.     

Synthesis and crystal and molecular structure of newN-substituted γ-hydroxybutyramides

TheN-(2-phenylethyl)amide of-(1, 1-ethylenedioxy)-ethyl--hydroxybutyric acid (II) and theN-(p-methoxybenzyl)amide of-(1, 1-ethylenedioxy)-ethyl--hydroxybutyric acid (III) have been synthesized and the crystal structure ofIII has been solved. CompoundIII, C₁₆H₂₃O₅N, crystallizes in the monoclinic space groupP2₁/c witha=12.572(2),b=11.149(2),c=12.317(2) Å and=106.53(1)°. The structure was solved by direct methods, and refined by full-matrix least squares to giveR=0.040 (R _w =0.047) for 2004 intensities. The dioxolane ring has a deformed half-chair conformation.