Mass analyzed threshold ionization spectroscopy of 7-azaindole cation

The vibrationally resolved mass analyzed threshold ionization (MATI) spectra of jet-cooled 7-azaindole have been recorded by ionizing via four different intermediate levels. The adiabatic ionization energy of this molecule is determined to be 65 462±5 cm⁻¹, which is greater than that of indole by 2871 cm⁻¹. The vibrational spectra of 7-azaindole in the S₁ and D₀ states have been successfully assigned by comparing the measured frequencies with those of indole as well as the predicted values from the ab initio calculations. Detailed analysis on the MATI spectra shows that the structure of the cation is somewhat different from that of this species in the neutral S₁ state.     

Rotationally resolved electronic spectroscopy of water clusters of 7-azaindole

The rotationally resolved electronic spectra of the electronic origin of the 7-azaindole-(H(2)O)(1) and of the 7-azaindole-(H(2)O)(2) clusters have been measured in a molecular beam. From the rotational constants the structures in the S(0) and S(1) electronic states were determined as cyclic with the pyrrolo NH and the pyridino N atoms being bridged by one and two water molecules, respectively. Excited state lifetimes of about 10 ns for both clusters have been found. In the spectrum of the 7-azaindole-(H(2)O)(2) cluster a splitting of the rovibronic band is observed, which can be traced back to a large amplitude motion, involving the out-of-plane hydrogen atoms of the water chain. Both the changes of the rotational constants upon electronic excitation and the orientation of the transition dipole point to a solvent induced state reversal between the L(a) and the L(b) states upon microsolvation.     

The synthesis of 5-azaindole derivatives via mesoionic oxazolium 5-oxides

A synthesis of 5-azaindole derivatives is described. This synthetic approach involves the preparation of an appropriately substituted pyrrole derivative by a 1,3-dipolar cycloaddition reaction of dimethyl acetylenedicarboxylate with a mesoionic oxazolium 5-oxide. The pyrrole intermediate contains a protected β-aminoethyl substituent, and subsequent removal of the phthalimido protecting group results in cyclization to yield the corresponding 5-azaindole. This approach has been used for both acyclic and cyclic amino acid precursors of the 1,3-dipole which is ultimately used in the sequence.     

Study of 7-azaindole in its first four singlet states

The molecular structure and properties of 7-azaindole in its first four singlet states were studied with a view to improving current understanding of the photophysical behavior of its C(2h) dimer. This dimer, which exhibits a double proton transfer via its two hydrogen bonds upon electronic excitation, has for 35 years been used as a model for the photophysical behavior of DNA base pairs. Electronic excitation of 7-azaindole simultaneously increases its acidity and basicity; these changes facilitate a concerted mechanism for the double proton transfer in the dimer. In this work, we found the acidity and basicity changes to occur only in its first pi,pi(*) excited singlet state.     

Excited-state double proton transfer of 7-azaindole in water nanopools

The excited-state proton-transfer dynamics of 7-azaindole occurring in the water nanopools of reverse micelles has been investigated by measuring time-resolved fluorescence spectra and kinetics, as well as static absorption and emission spectra, with varying water content and isotope. 7-Azaindole molecules are found to exist in the bound-water regions of reverse micelles. The rate constant and the kinetic isotope effect of proton transfer are smaller than those in bulk water although both increase with the size of the water nanopool. The retardation of proton transfer in the bound regions is attributed to the increased free energy of prerequisite solvation to form a cyclically H-bonded 1:1 7-azaindole/water complex.     

Investigation of the protonation of 5-azaindole derivatives by pmr spectroscopy

The protonation of some 5-azaindoles and 5-azaindolines by trifluoroacetic acid in media with different dielectric constants was studied by PMR spectroscopy. Protonation occurs at the nitrogen atom of the pyridine ring. The structures of the monocations of 5-azaindole, 5-azaindoline, and their 1-phenyl derivatives correspond to a considerable contribution of the quinoid structure with transfer of positive charge to the nitrogen atom of the pyrrole fragment of the molecule. On the basis of an investigation of the chemical shifts of the protons of 1-phenyl-5-azaindole and 1-phenyl-5-azaindoline on the trifluoroacetic acid concentration in methylene chloride, acetonitrile, and deuteroacetone, a protonation mechanism in which transfer of a proton from the donor to the acceptor in slightly polar media occurs through the formation of a hydrogen-bonded complex of the base with the acid is proposed.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 6, pp. 767–772, June, 1973.     

A theoretical and optical spectroscopic study of the mechanism of a tautomeric transformation in the 7-azaindole dimer and the 7-azaindole complex with a water molecule

Electronic, vibrational, and electronic vibrational spectra of the 7-azaindole dimer, the 7-azaindole complex with a water molecule, and their tautomers are calculated. Transition states are considered based on the analysis of frequencies and shapes of low-frequency vibrations and the Mulliken charge redistribution. The performed quantum chemical calculation of chemical reactions enabled the determination of the structure of transition states and proton transfer conditions. It is shown that in the 7-AzI dimer the proton transfer has a character consistent with the formation of a zwitterionic form. The structure of excited states is calculated and the fluorescence spectra of the first electronic transitions that can be used as a criterion of the formation of 7-AzI tautomers as a result of chemical reactions proceeding through a proton transfer in the 7-azaindole dimer and the 7-azaindole complex with a water molecule, are interpreted.     

Azaindole derivatives. 61. Electrophilic substitution reactions in 1-benzyl-6-methoxy-7-cyano-5-azaindole and 6-oxo-5-azaindoline

The electrophilic substitution reactions (nitration, bromination, acylation, and the Mannich and Vilsmeier reactions) of 1-benzyl-6-methoxy-7-cyano-5-azaindole and the nitration and Vilsmeier reaction of 6-hydroxy-5-azaindoline were studied.See [1] for Communication 60.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 3, pp. 356–360, March, 1982.     

Synthesis of some 1-hydroxy derivatives of 4- and 6-azaindole analogues

1-Hydroxy-4-azaindole and 1-hydroxy-4-(and 6)-azaindol-2(3H)-one derivatives are novel compounds and a facile synthesis by the reductive cyclisation of substituted 3-nitropyridines is described. Problems associated with the catalytic hydrogenation of the parent nitro compounds are also discussed.     

Excited state proton transfer in 3-methyl-7-azaindole dimer. Symmetry control

The concerted double proton transfer undergone by the C(2)(h) dimer of 7-azaindole upon electronic excitation has also been reported to occur in 3-methyl-7-azaindole monocrystals and in dimers of this compound under free-jet conditions. However, the results obtained in this work for the 3-methyl-7-azaindole dimer formed in a 10(-4) M solution of the compound in 2-methylbutane suggest that the dimer produces no fluorescent signal consistent with a double proton transfer in the liquid phase or in a matrix. In this paper, the spectroscopic behavior of the doubly hydrogen bonded dimer of 3-methyl-7-azaindole is shown to provide a prominent example of molecular symmetry control over the spectroscopy of a substance. This interpretation opens up a new, interesting research avenue for exploring the ability of molecular symmetry to switch between proton-transfer mechanisms. It should be noted that symmetry changes in the 3-methyl-7-azaindole dimer are caused by an out-of-phase internal rotation of the two methyl groups.     

Strong agostic-type interactions in ruthenium benzylidene complexes containing 7-azaindole based scorpionate ligands

The complexes [Ru(Tai)Cl{=C(H)Ph}(PCy(3))] (4) and [Ru((Ph)Bai)Cl{=C(H)Ph}(PCy(3))] (5) [where Tai = HB(7-azaindolyl)(3) and (Ph)Bai = Ph(H)B(7-azaindolyl)(2)] have been prepared and structurally characterised. The borohydride unit is located in the coordination site trans to the chloride ligand in both complexes. The degree of interaction between the borohydride group and the metal centre was found to be significantly large in both cases. Thermolysis reactions involving complex 4 led to a dehydrogenation reaction forming [Ru(Tai)Cl{PCy(2)(η(2)-C(6)H(9))}] (6) where the benzylidene group acts as a hydrogen acceptor.     

Excited-state double proton transfer of 7-azaindole dimers in a low-temperature organic glass

The excited-state double proton transfer of model DNA base pairs, 7-azaindole (7AI) dimers, is explored in a low-temperature organic glass of n-dodecane using picosecond time-resolved fluorescence spectroscopy. Reaction mechanisms are found to depend on the conformations of 7AI dimers at the moment of excitation; whereas planar conformers tautomerize rapidly (<10 ps), twisted conformers undergo double proton transfer to form tautomeric dimers on the time scale of 250 ps at 8 K. The proton transfer is found to consist of two orthogonal steps: precursor-configurational optimization and intrinsic proton transfer via tunneling. The rate is almost isotope independent at cryogenic temperatures because configurational optimization is the rate-determining step of the overall proton transfer. This optimization is assisted by lattice vibrations below 150 K or by librational motions above 150 K.     

1H and 13C NMR studies of 7-azaindole and related compounds

The ¹H and ¹³C chemical shifts, proton-proton coupling constants, and one-bond carbon-hydrogen coupling constants have been obtained for 7-azaindole, 1-methyl-7-azaindole, their corresponding methyl iodide salts, and the related compound 7-methyl-7H-pyrrolo [2,3-b]pyridine. are different from those of either 7-azaindole or 1-methyl-7-azaindole.     

Photoaddition of benzophenone to azaindole,synthesis of the oxetane of 7-azaindole

7-Azaindole did not react with benzophenone on irradiation. However, irradiation of benzophenone in the presence of 1-acetyl-7-azaindole produced an oxetane by cycloaddition of the ketone to the 7-azaindole 2,3-double bond. The nmr and the mass spectra of the oxetane have also been studied in some detail.     

Amide derivatives of 4-azaindole: Design,synthesis, and EGFR targeting anticancer agents

Abstract

A series of amide derivatives of azaindole-oxazoles (11a-n) were designed and synthesized and their structures were confirmed by ¹HNMR, ¹³CNMR and mass spectral analysis. Further, these derivatives were screened for their anticancer activity against human cancer cell lines viz; MCF7 (breast), A549 (lung) and A375 (melanoma). In vitro anticancer activity screening indicated that most of the hybrids exhibited potent inhibitory activities in a variety of cancer cell lines. Among the compounds 11d, 11e, 11f, 11j, 11k, 11l, 11m, and 11n were exhibited more potent activity than standard, in those mainly two compounds 11m and 11j were exhibited excellent activity in MCF-7 cell line with IC₅₀ values 0.034 and 0.036?µM. Moreover, all these compounds were carried out their molecular docking studies on EGFR receptor results indicated that two potent compounds 11m and 11j were strongly binds to protein EGFR (PDB ID: 4hjo). It was found that the energy calculations were in good agreement with the observed IC₅₀ values.     

Synthesis and fluorescence study of 7-azaindole in DNA oligonucleotides replacing a purine base

The fluorescence spectroscopy of 7-azaindole (7aIn) incorporated in DNA oligonucleotides is investigated. Incorporation of 7aIn into DNA oligonucleotides is accomplished through standard solid-phase phosphoramidite chemistry. Fluorescence emission of the 7aIn chromophore shifts slightly to the red (from 386 nm to 388 nm) upon glycosylation at the N-1 position, but its relative fluorescence quantum yield increases 23 times, from 0.023 to 0.53. Upon incorporation into DNA, the fluorescence emission of 7aIn is greatly quenched with fluorescence quantum yields of 0.020 and 0.016 in single and double strand DNA, respectively. The fluorescence emission for 7aIn in DNA oligonucleotides shifts to the blue with an emission maximum at 379 nm. Both the strong fluorescence quenching and the blue shift of the emission spectrum signify that 7aIn is stacked with neighboring DNA bases in both single and double strand DNA. As the duplex DNA melts due to temperature increase, the fluorescence of the 7aIn chromophore increases, indicating the transition from the less fluorescent duplex DNA to the more fluorescent single strand DNA. Since this fluorescent 7aIn is a structural analog of purine, its fluorescence property may be utilized as a probe for studying nucleic acid structure and dynamics.     

The molecular symmetry and electronic spectroscopy of 7-azaindole dimer: its proton-transfer channels

The potential-energy surfaces for the proton transfer in the doubly hydrogen-bonded dimer of 7-azaindole in its lowest excited electronic states were examined. The dimer with C2h symmetry in its lowest excited electronic states, 2Ag and 1Bu, undergoes concerted double-proton transfer via transition states of the same symmetry placed at energies 4.55 and 4.70 kcal/mol higher, respectively. This suggests that the activation barriers for the double-proton transfer, if any, are lower than 1 kcal/mol. Emission from the dimers resulting from the double-proton transfer involves a Stokes shift of 5605 cm(-1), as theoretically estimated from the 0-0 components of the absortion and emission transitions of the dimer. Surprisingly, however, the calculations suggest that the green emission cannot arise from the 2Ag state generated by a double-proton transfer, because this structure possesses an imaginary frequency. In the 7-azaindole dimer of Cs symmetry, the first excited electronic state, a', lies 4.9 kcal/mol below 1Bu. This excited state a' can be the starting point for single-proton transfers giving a zwitterionic form that can dissociate into the protonated and deprotonated forms of 7-azaindole, the former being electronically excited. This situation of lower symmetry is consistent with the mutational scheme proposed by Goodman [Nature (London) 378, 237 (1995)].