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1.
Quantum mechanical calculations using density functional theory with the hybrid B3LYP functional and the 6-31++G(d,p) basis set are performed on isolated triethylamine (TEA), its hydrogen-bond complex with phenol, and protonated TEA. The calculations include the optimized geometries and the results of a natural bond orbital (NBO) analysis (occupation of sigma* orbitals, hyperconjugative energies, and atomic charges). The harmonic frequencies of the C-H stretching vibrations of TEA are predicted at the same level of theory. Two stable structures are found for isolated TEA. In the most stable symmetrical structure (TEA-S), the three C-C bond lengths are equal and one of the C-H bond of each of the three CH2 groups is more elongated than the three other ones. In the asymmetrical structure (TEA-AS), one of the C-C bonds and two C-H bonds of two different CH2 groups are more elongated than the other ones. These structures result from the hyperconjugation of the N lone pair to the considered sigma*(C-H) orbitals (TEA-S) or to the sigma*(C-C) and sigma*(C-H) orbitals of the CH2 groups (TEA-AS). The formation of a OH...N hydrogen bond with phenol results in a decrease of the hyperconjugation, a contraction of the C-H bonds, and blue-shifts of 28-33 cm-1 (TEA-S) or 40-48 cm-1 (TEA-AS) of the nus(CH2) vibrations. The nu(CH3) vibrations are found to shift to a lesser extent. Cancellation of the lone pair reorganization in protonated TEA-S and TEA-AS results in large blue-shifts of the nu(CH2) vibrations, between 170 and 190 cm-1. Most importantly, in contrast with the blue-shifting hydrogen bonds involving C-H groups, the blue-shifts occurring at C-H groups not participating in hydrogen bond formation is mainly due to a reduction of the hyperconjugation and the resulting decrease in the occupation of the corresponding sigma*(C-H) orbitals. A linear correlation is established between the C-H distances and the occupation of the corresponding sigma*(C-H) orbitals in the CH2 groups.  相似文献   

2.
Cyclohexane (1), oxygen-, sulfur-, and/or nitrogen-containing six-membered heterocycles 2-5, cyclohexanone (6), and cyclohexanone derivatives 7-16 were studied theoretically [B3LYP/6-31G(d,p) and PP/IGLO-III//B3LYP/6-31G(d,p) methods] to determine the structural (in particular C-H bond distances) and spectroscopic (specifically, one bond (1)J(C-H) NMR coupling constants) consequences of stereoelectronic hyperconjugative effects. The results confirm the importance of n(X) --> sigma*(C-H)(app) (where X = O, N), sigma(C-H)(ax) --> pi*(C=O), sigma(S-C) --> sigma*(C-H)(app), sigma(C-S)-->sigma*(C-H)(app), beta-n(O) --> sigma*(C-H), and sigma(C-H) --> sigma*(C-H)(app) hyperconjugation, as advanced in previous theoretical models. Calculated r(C-H) bond lengths and (1)J(C-H) coupling constants for C-H bonds participating in more than one hyperconjugative interaction show additivity of the effects.  相似文献   

3.
On the basis of electronic structure calculations and molecular orbital analysis, we offer a physical explanation of the observed large decrease (0.9 eV) in ionization energies (IE) in going from hydroxymethyl to hydroxyethyl radical. The effect is attributed to hyperconjugative interactions between the sigma CH orbitals of the methyl group in hydroxyethyl, the singly occupied p orbital of carbon, and the lone pair p orbital of oxygen. Analyses of vertical and adiabatic IEs and hyperconjugation energies computed by the natural bond orbital (NBO) procedure reveal that the decrease is due to the destabilization of the singly occupied molecular orbital in hydroxyethyl radical as well as structural relaxation of the cation maximizing the hyperconjugative interactions. The stabilization is achieved due to the contraction of the CO and CC bonds, whereas large changes in torsional angles bear little effect on the total hyperconjugation energies and, consequently, IEs.  相似文献   

4.
We employ DFT/B3LYP method to investigate linear open-chain clusters (n = 2-8) of the cis-triaziridine molecule that is a candidate molecule for high energy density materials (HEDM). Our calculations indicate that the pervasive phenomena of cooperative effects are observed in the clusters of n = 3-8, which are reflected in changes in lengths of N...H hydrogen bonds, stretching frequencies, and intensities of N-H bonds, dipole moments, and charge transfers as cluster size increases. The n(N) --> sigma*(N-H) interactions, i.e., the charge transfers from lone pairs (n(N)) of the N atoms into antibonds (sigma*) of the N-H bonds acting as H-donors, can be used to explain the observed cooperative phenomena. The approaches based upon natural bond orbital (NBO) method and theory of atoms in molecule (AIM) to evaluating N...H strengths are found to be equivalent. In the process of N...H bonding, cooperative nature of n(N) --> sigma*(N-H) interactions promotes formation of stronger N...H bonds as reflected in increases in the capacities of cis-triaziridine clusters to concentrate electrons at the bond critical points of N...H bonds. The calculated nonadditive energies also show that the cooperative effects due to n(N) --> sigma*(N-H) interactions indeed provide additional stabilities for the clusters.  相似文献   

5.
Ab initio studies carried out at the MP2(full)/6-311+G(2df) and MP2(full)/aug-cc-pVTZ-PP computational levels reveals that dinitrogen (N(2)) and cuprous halides (CuX, X = F, Cl, Br) form three types of systems with the side-on and end-on coordination of N(2): N[triple bond]N-CuX (C(infinity v)), N(2)-CuX (C(2v)) stabilized by the donor-acceptor bonds and weak van der Waals complexes N(2)...XCu (C(2v)) with dominant dispersive forces. An electron density transfer between the N(2) and CuX depends on type of the N(2) coordination and a comparison of the NPA charges yields the [N[triple bond]N](delta+)-[CuX](delta-) and [N(2)](delta-)-[CuX](delta+) formula. According to the NBO analysis, the Cu-N coordinate bonds are governed by predominant LP(N2)-->sigma*(Cu-X) "2e-delocalization" in the most stable N[triple bond]N-CuX systems, meanwhile back donation LP(Cu)-->pi*(N-N) prevails in less stable N(2)-CuX molecules. A topological analysis of the electron density (AIM) presents single BCP between the Cu and N nuclei in the N[triple bond]N-CuX, two BCPs corresponding to two donor-acceptor Cu-N bonds in the N(2)-CuX and single BCP between electron density maximum of the N[triple bond]N bond and halogen nucleus in the van der Waals complexes N(2)...XCu. In all systems values of the Laplacian nabla(2)rho(r)(r(BCP)) are positive and they decrease following a trend of the complex stability i.e. N[triple bond]N-CuX (C(infinity v)) > N(2)-CuX (C(2v)) > N(2)...XCu (C(2v)). A topological analysis of the electron localization function (ELF) reveals strongly ionic bond in isolated CuF and a contribution of covalent character in the Cu-Cl and Cu-Br bonds. The donor-acceptor bonds Cu-N are characterized by bonding disynaptic basins V(Cu,N) with attractors localized at positions corresponding to slightly distorted lone pairs V(N) in isolated N(2). In the N[triple bond]N-CuX systems, there were no creation of any new bonding attractors in regions where classically the donor-acceptor bonds are expected and there is no sign of typical covalent bond Cu-N with the bonding pair. Calculations carried out for the N[triple bond]N-CuX reveal small polarization of the electron density in the N[triple bond]N bond, which is reflected by the bond polarity index being in range of 0.14 (F) to 0.11 (Cl).  相似文献   

6.
Methyl radical complexes H3C…HCN and H3C…HNC have been investigated at the UMP2(full)/aug‐cc‐pVTZ level to elucidate the nature of hydrogen bonds. To better understand the intermolecular H‐bond interactions, topological analysis of electron density at bond critical points (BCP) is executed using Bader's atoms‐in‐molecules (AIM) theory. Natural bond orbital (NBO) analysis has also been performed to study the orbital interactions and change of hybridization. Theoretical calculations show that there is no essential difference between the blue‐shift H‐bond and the conventional one. In H3C…HNC complex, rehybridization is responsible for shortening of the N? H bond. The hyperconjugative interaction between the single electron of the methyl radical and N? H antibonding orbital is up to 7.0 kcal/mol, exceeding 3.0 kcal/mol, the upper limit of hyperconjugative n(Y)→σ*(X–H) interaction to form the blue‐shifted H‐bond according to Alabugin's theory. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007  相似文献   

7.
The nature of the intermolecular hydrogen bond for the furan-HCl and furan-CHCI3 complexes has been studied using ab initio calculations with MP2 level of theory. The new hydrogen bond type of C(CI)-H...O and π interactions are studied also. It is shown that, for the optimized geometries of furan-CHCI3, C-H bond lengths contract and vibrational frequencies are blue-shifted, while for the furan-HCl complex, H-CI bond lengths elongate and vibrational frequencies are red-shifted. In addition, the NBO analysis indicates that, for the furan-CHCI3 complex, the charge transfers from the lone pair of the proton acceptor to both σ *(CH) antibonding MO and lone pairs of CI atom.  相似文献   

8.
A natural bonding orbital (NBO) analysis of phosphate bonding and connection to experimental phosphotransfer potential is presented. Density functional calculations with the 6-311++G(d,p) basis set carried out on 10 model phosphoryl compounds verify that the wide variability of experimental standard free energies of hydrolysis (a phosphotransfer potential benchmark) is correlated with the instability of the scissile O-P bond through computed bond lengths. NBO analysis is used to analyze all delocalization interactions contributing to O-P bond weakening. Phosphoryl bond lengths are found to correlate strongest (R = 0.90) with the magnitude of the ground-state n(O) --> sigma*(O-P) anomeric effect. Electron-withdrawing interactions of the substituent upon the sigma(O-P) bonding orbital also correlate strongly with O-P bond lengths (R = 0.88). However, an analysis of sigma*(O-P) and sigma(O-P) populations show that the increase in sigma*(O-P) density is up to 6.5 times greater than the decrease in sigma(O-P) density. Consequently, the anomeric effect is more important than other delocalization interactions in impacting O-P bond lengths. Factors reducing anomeric power by diminishing either lone pair donor ability (solvent) or antibonding acceptor ability (substituent) are shown to result in shorter O-P bond lengths. The trends shown in this work suggest that the generalized anomeric effect provides a simple explanation for relating the sensitivity of the O-P bond to diverse environmental and substituent factors. The anomeric n(O) --> sigma*(O-P) interaction is also shown to correlate strongly with experimentally determined standard free energies of hydrolysis (R = -0.93). A causal mechanism cannot be inferred from correlation. Equally, a P-value of 1.2 x 10(-4) from an F-test indicates that it is unlikely that the ground-state anomeric effect and standard free energies of hydrolysis are coincidentally related. It is found that as the exothermicity of hydrolysis increases, the energy stabilization of the ground-state anomeric effect increases with selective destabilization of the high-energy O-P bond to be broken in hydrolysis. The anomeric effect therefore partially counteracts a larger resonance stabilization of products that makes hydrolysis exothermic and needs to be considered in achieving improved agreement between calculated and empirical energies of hydrolysis. The avenues relating the thermodynamic behavior of phosphates to underlying structural factors via the anomeric effect are discussed.  相似文献   

9.
Stereoelectronic effects proposed for C-H bonds in cyclohexane, 1, 3-dioxane, 1,3-oxathiane, and 1,3-dithiane were studied computationally. The balance of three effects, namely, sigma(C)(-)(X) --> sigma(C)(-)(H)()eq, sigma(C)(-)(H)()eq --> sigma(C)(-)(X), and n(p)(X) --> sigma(C)(-)(H)()eq interactions, was necessary to explain the relative elongation of equatorial C(5)-H bonds. The role of homoanomeric n(p) --> sigma(C(5))(-)(H)()eq interaction is especially important in dioxane. In dithiane, distortion of the ring by long C-S bonds dramatically increases overlap of sigma(C(5))(-)(H)()eq and sigma(C)(-)(S) orbitals and energy of the corresponding hyperconjugative interaction. Anomeric n(p)(X) --> sigma(C)(-)(H)()ax interactions with participation of axial C-H bonds dominate at C(2), C(4), and C(6). The balance of hyperconjugative interactions involving C-H(ax) and C-H(eq) bonds agrees well with the relative bond lengths for all C-H(ax)/C-H(eq) pairs in all studied compounds. At the same time, the order of one-bond spin-spin coupling constants does not correlate with the balance of stereoelectronic effects in dithiane and oxathiane displaying genuine reverse Perlin effect.  相似文献   

10.
采用量子化学从头算的MP2方法, 分别在6-31G(d,p), 6-311+G(d,p)和AUG-cc-pVDZ基组下, 研究了复合物C5H5N…HCl(1), C5H5N…HCCl3(2)和C5H5N…HCCl3(3)的分子间氢键. 计算结果表明, 在复合物1中, HCl中Cl—H键伸长, 形成Cl—H…N红移氢键; 在复合物2中, HCCl3中C—H键伸长, 形成C—H…N 红移氢键; 在复合物3中, HCCl3中C—H键收缩, 形成C—H…π蓝移氢键. 自然键轨道(NBO)分析表明, 影响氢键红移和氢键蓝移主要有3个因素: n(Y)→σ*(X—H)超共轭作用、X—H键轨道再杂化和质子供体电子密度重排. 其中, 超共轭作用属于键伸长效应, 电子密度重排和轨道再杂化属于键收缩效应. 在复合物1和2中, 由于键伸长效应处于优势地位导致形成红移氢键; 在复合物3中, 由于键收缩效应处于优势地位导致形成蓝移氢键.  相似文献   

11.
A remarkable difference for (2)J(C(2)-H(f)) coupling constant in syn and anti conformers of 5-X-furan-2-carboxaldehydes (X = CH(3), Ph, NO(2), Br) and a rationalization of this difference are reported. On the basis of the current knowledge of the Fermi-contact term transmission, a rather unusual dual-coupling pathway in the syn conformer is presented. The additional coupling pathway resembles somewhat that of the J(H-H) in homoallylic couplings, which are transmitted by hyperconjugative interactions involving the pi(C=C) electronic system. The homoallylic coupling pathway can be labeled as sigma*(C-H) <-- pi(C=C) --> sigma*(C-H). In the present case, this additional coupling pathway, using an analogous notation, can be labeled as sigma*(C(2)-C(C)) <-- LP(1)(O(1))...LP(2)(O(C)) --> sigma*(C(C)-H(f)) (sigma*(C(2)-C(C))) where O(1) and O(C) stand for the ring and carbonyl O atoms, respectively. This additional coupling pathway is not activated in the anti conformers since both oxygen lone pairs do not overlap.  相似文献   

12.
Ab initio molecular orbital and density functional theory (DFT) in conjunction with different basis sets calculations were performed to study the N? H…O and S? H…O blue‐shifted H‐bonds in the HNO…HFSO2 complex. The geometric structures, vibrational frequencies, and interaction energies were calculated by both standard and CP‐corrected methods. Natural bond orbital (NBO) analysis was used to investigate the origin of blue‐shifted H‐bonds, showing that the decrease in the σ*(N? H) and σ*(S? H) is due to the electron density redistribution effect. The structure reorganization effect on the blue‐shifted hydrogen bonds was discussed in detail. © 2006 Wiley Periodicals, Inc. Int J Quantum Chem, 2007  相似文献   

13.
Natural bond orbital (NBO) analysis described here demonstrates that trans-hydrogen-bond (trans-H-bond) NMR J couplings in the DNA A-T base pair, h2JNN and h1JNH, are determined largely by three terms: two Lewis-type contributions (the single-orbital contribution from the adenine lone pair and the contribution from the sigmaN3H3 natural bond orbital of the thymine ring) and one contribution from pairwise delocalization of spin density (between the lone pair in adenine and the sigma* antibonding orbital linking N3 and H3 of thymine). For h2JNN coupling, all three contributions are positive, whereas for h1JNH coupling, the delocalization term is negative, and the other two terms are positive, resulting in a small net positive coupling constant. This result rationalizes the experimental findings that the two-bond coupling (h2JNN approximately 9 Hz) is larger than the one-bond coupling (h1JNH approximately 3 Hz) and demonstrates that the same hyperconjugative and steric mechanisms that stabilize the H-bond are involved in the transmission of J coupling information. The N1...H3-N3 H-bond of the DNA A-T base pair is found to exhibit significant covalent character, but steric effects contribute almost equally to the trans-H-bond coupling.  相似文献   

14.
A combination of electronic, structural, and energetic analyses shows that a somewhat larger intrinsic donor ability of the C-H bonds compared to that of C-C bonds can be overshadowed by cooperative hyperconjugative interactions with participation of remote substituents (double hyperconjugation or through-bond interaction). The importance of double hyperconjugation was investigated computationally using two independent criteria: (a) relative total energies and geometries of two conformers ("hyperconjomers") of delta-substituted cyclohexyl cations (b) and natural bond orbital (NBO) analysis of electronic structure and orbital interactions in these molecules. Both criteria clearly show that the apparent donor ability of C-C bonds can vary over a wide range, and the relative order of donor ability of C-H and C-C bonds can be easily inverted depending on molecular connectivity and environment. In general, relative donor abilities of sigma bonds can be changed by their through-bond communication with remote substituents and by greater polarizability of C-X bonds toward heavier elements. These computational results can be confirmed by experimental studies of conformational equilibrium of delta-substituted cyclohexyl cations.  相似文献   

15.
Electronic structure calculations have been performed on a model N-phosphorylguanidine, or phosphagen, to understand the stereoelectronic factors contributing to the lability of the "high-energy" N-P bond. The lability of the N-P bond is central to the physiological role of phosphagens involving phosphoryl transfer reactions important in cellular energy buffering and metabolism. Eight protonated forms of N-methyl-N'-phosphorylguanidine have been energy minimized at levels of theory ranging up to B3LYP/6-311++G(d,p) and MP2/6-311++G(d,p) to investigate the correlation between protonation state and N-P bond length. Selected forms have also been minimized using the CCSD/6-311++G(d,p) and QCISD/6-311++G(d,p) levels of theory. Bulk solvation energies using the polarized continuum model (PCM) with B3LYP/6-311++G(d,p) test the influence of the surroundings on computed structures and energies. The N-P bond length depends on the overall protonation state where increased protonation at the phosphoryl group or deprotonation at the unsubstituted N' nitrogen results in shorter, stronger N-P bonds. Natural bond orbital analysis shows that the protonation state affects the N-P bond length by altering the magnitude of stabilizing n(O) --> sigma*(N-P) stereoelectronic interactions and to a lesser extent the sigma(N-P) --> sigma*(C-N') and sigma(N-P) --> sigma*(C-N) interactions. The computations do not provide evidence of a competition between the phosphoryl and guanidinium groups for the same lone pair on the bridging nitrogen, as previously suggested by opposing resonance theory. The computed n(O) --> sigma*(N-P) anomeric effect provides a novel explanation of "high-energy" N-P bond lability. This offers new mechanistic insight into phosphoryl transfer reactions involving both phosphagens and other biochemically important "high-energy" phosphoester bonds.  相似文献   

16.
在DFT-B3LYP/6-311++G**水平上分别求得(CH3)2S…ClOH卤键复合物和(CH3)2S…HOCl氢键复合物势能面上的稳定构型. 频率分析表明, 与单体HOCl相比, 在两种复合物中, 10Cl—11O和12H—11O键伸缩振动频率发生显著的红移. 经MP2/6-311++G**水平计算的含基组重叠误差(BSSE)校正的气相中相互作用能分别为-11.69和-24.16 kJ·mol-1. 自然键轨道理论(NBO)分析表明, 在(CH3)2S…ClOH卤键复合物中, 引起10Cl—11O键变长的因素包括两种电荷转移: (i) 孤对电子LP(1S)1→σ*(10Cl—11O); (ii) 孤对电子LP(1S)2→σ*(10Cl—11O), 其中孤对电子LP(1S)2→σ*(10Cl—11O)转移占主要作用, 总的结果是使σ*(10Cl—11O)的自然布居数增加0.14035e, 同时11O原子的再杂化使其与10Cl成键时s成分增加, 即具有与电荷转移作用同样的“拉长效应”; 在(CH3)2S…HOCl氢键复合物中也存在类似的电荷转移, 但是11O原子的再杂化不同于前者. 自然键共振理论(NRT)进行键序分析表明, 在卤键复合物和氢键复合物中, 10Cl—11O和12H—11O键的键序都减小. 通过分子中原子理论(AIM)分析了复合物中卤键和氢键的电子密度拓扑性质.  相似文献   

17.
The structures and vibrational spectra of the intermolecular complexes formed by insertion of substituted formaldehyde molecules HRCO (R = H, Li, F, Cl) into cyclic hydrogen fluoride and water clusters are studied at the MP2/aug-cc-pVTZ computational level. Depending on the nature of the substituent R, the cluster type, and its size, the C-H stretching modes of HRCO undergo large blue and partly red shifts, whereas all the F-H and O-H stretching modes of the conventional hydrogen bonds are strongly red-shifted. It is shown that (i) the mechanism of blue shifting can be explained within the concept of the negative intramolecular coupling between C-H and C=O bonds that is inherent to the HRCO monomers, (ii) the blue shifts also occur even if no hydrogen bond is formed, and (iii) variation of the acceptor X or the strength of the C-H...X hydrogen bond may either amplify the blue shift or cause a transition from blue shift to red shift. These findings are illustrated by means of intra- and intermolecular scans of the potential energy surfaces. The performance of the negative intramolecular coupling between C-H and C=O bonds of H(2)CO is interpreted in terms of the NBO analysis of the isolated H(2)CO molecule and H(2)CO interacting with (H2O)n and (HF)n clusters.  相似文献   

18.
The importance of intermolecular interactions in biology and material science has prompted chemists to explore the nature of the variety of such interactions. The strongest of these interac-tions are the hydrogen bonds, which play an important role in determining the molecular confor-mation, crystal packing, and the structure of biological systems such as nucleic acids. Extensive experimental and theoretical efforts[1—5] have been devoted to the studies of this type of interac-tions, such as …  相似文献   

19.
The reaction of diaryl ketoalkynes with 1,2-diamino ethane leads to the full scission of the triple bond with the formation of acetophenone and imidazoline fragments. In this transformation, one of the alkyne carbons undergoes formal reduction with the formation of three C-H bonds, whereas the other carbon undergoes formal oxidation via the formation of three C-N bonds (one π and two σ). Computational analysis confirmed that the key fragmentation step proceeds via a six-membered TS in a concerted manner. Both amines are involved in the fragmentation: the N-H moiety of one amine transfers a proton to the developing negative charge at the enolate oxygen, while the other amine provides direct stereoelectronic assistance to the C-C bond cleavage via a hyperconjugative n(N) → σ*(C-C) interaction.  相似文献   

20.
The electronic Fukui function is used to give qualitative electronic proof on the existence of back-bonding from the carbon lone pair toward the sigma* P-Y and P-O orbitals in phosphorus stabilized carbanions. NBO analyses are used to investigate the energetic, electronic, and structural impacts of this negative hyperconjugation interaction. The observed energetic stabilization can indeed be attributed to the electronic delocalization of the lone pair toward the antibonding orbitals. This delocalization is furthermore responsible for the shorter P-C bonds, longer P-Y (P-O) bonds, and wider Y-P-Y angles observed for the anionic compounds compared to their neutral counterparts. From the electronic NBO analysis it becomes clear that phosphorus containing functional groups are best described as sigma donor/pi acceptors.  相似文献   

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