The 1deltag dioxygen ene reaction with propene: a density functional and multireference perturbation theory mechanistic study

This study aims to determine whether a balance between concerted and non-concerted pathways exists, and in particular to ascertain the possible role of diradical/zwitterion or peroxirane intermediates. Three non-concerted pathways, via 1) diradical or 2) peroxirane intermediates, and 3) by means of hydrogen-abstraction/radical recoupling, plus one concerted pathway (4), are explored. The intermediates and transition structures (TS) are optimized at the DFT(MPW1K), DFT(B3LYP) and CASSCF levels of theory. The latter optimizations are followed by multireference perturbative CASPT2 energy calculations. (1) The polar diradical forms from the separate reactants by surmounting a barrier (deltaE(++)(MPW1K)=12, deltaE++(B3LYP)=14, and deltaE(++)(CASPT2)=16 kcal mol(-1) and can back-dissociate through the same TS, with barriers of 11 (MPW1K) and 8 kcal mol(-1) (B3LYP and CASPT2). The diradical to hydroperoxide transformation is easy at all levels (deltaE(++)(MPW1K)<4, deltaE(++)(B3LYP)=1 and deltaE(++)(CASPT2)=1 kcal mol(-1)). (2) Peroxirane is attainable only by passing through the diradical intermediate, and not directly, due to the nature of the critical points involved. It is located higher in energy than the diradical by 12 kcal mol(-1), at all theory levels. The energy barrier for the diradical to cis-peroxirane transformation (deltaE(++)=14-16 kcal mol(-1)) is much higher than that for the diradical transformation to the hydroperoxide. In addition, peroxirane can very easily back-transform to the diradical (deltaE(++)<3 kcal mol(-1)). Not only the energetics, but also the qualitative features of the energy hypersurface, prevent a pathway connecting the peroxirane to the hydroperoxide at all levels of theory. (3) The last two-step pathway (hydrogen-abstraction by (1)O(2), followed by HOO-allyl radical coupling) is not competitive with the diradical mechanism. (4) A concerted pathway is carefully investigated, and deemed an artifact of restricted DFT calculations. Finally, the possible ene/[pi2+pi2] competition is discussed.     

Enthalpies of formation, bond dissociation energies and reaction paths for the decomposition of model biofuels: ethyl propanoate and methyl butanoate

The complete basis set method CBS-QB3 has been used to study the thermochemistry and kinetics of the esters ethyl propanoate (EP) and methyl butanoate (MB) to evaluate initiation reactions and intermediate products from unimolecular decomposition reactions. Using isodesmic and isogeitonic equations and atomization energies, we have estimated chemically accurate enthalpies of formation and bond dissociation energies for the esters and species derived from them. In addition it is shown that controversial literature values may be resolved by adopting, for the acetate radical, CH3C(O)O(.-), DeltaH(o)(f)298.15K) = -197.8 kJ mol(-1) and for the trans-hydrocarboxyl radical, C(.-)(O)OH, -181.6 +/- 2.9 kJ mol(-1). For EP, the lowest energy decomposition path encounters an energy barrier of approximately 210 kJ mol(-1) (approximately 50 kcal mol(-1)), which proceeds through a six-membered ring transition state (retro-ene reaction) via transfer of the primary methyl H atom from the ethyl group to the carbonyl oxygen, while cleaving the carbon-ether oxygen to form ethene and propanoic acid. On the other hand, the lowest energy path for MB has a barrier of approximately 285 kJ mol(-1), producing ethene. Other routes leading to the formation of aldehydes, alcohols, ketene, and propene are also discussed. Most of these intramolecular hydrogen transfers have energy barriers lower than that needed for homolytic bond fission (the lowest of which is 353 kJ mol(-1) for the C(alpha)-C(beta) bond in MB). Propene formation is a much higher energy demanding process, 402 kJ mol(-1), and it should be competitive with some C-C, C-O, and C-H bond cleavage processes.     

Quantum chemical study of the mechanism of reaction between NH (X 3sigma-) and H2, H2O, and CO2 under combustion conditions

Reactions of ground-state NH (3sigma-) radicals with H2, H2O, and CO2 have been investigated quantum chemically, whereby the stationary points of the appropriate reaction potential energy surfaces, that is, reactants, products, intermediates, and transition states, have been identified at the G3//B3LYP level of theory. Reaction between NH and H2 takes place via a simple abstraction transition state, and the rate coefficient for this reaction as derived from the quantum chemical calculations, k(NH + H2) = (1.1 x 10(14)) exp(-20.9 kcal mol(-1)/RT) cm3 mol(-1) s(-1) between 1000 and 2000 K, is found to be in good agreement with experiment. For reaction between triplet NH and H2O, no stable intermediates were located on the triplet reaction surface although several stable species were found on the singlet surface. No intersystem crossing seam between triplet NH + H2O and singlet HNO + H2 (the products of lowest energy) was found; hence there is no evidence to support the existence of a low-energy pathway to these products. A rate coefficient of k(NH + H2O) = (6.1 x 10(13)) exp(-32.8 kcal mol(-1)/RT) cm3 mol(-1) s(-1) between 1000 and 2000 K for the reaction NH (3sigma-) + H2O --> NH2 (2B) + OH (2pi) was derived from the quantum chemical results. The reverse rate coefficient, calculated via the equilibrium constant, is in agreement with values used in modeling the thermal de-NO(x) process. For the reaction between triplet NH and CO2, several stable intermediates on both triplet and singlet reaction surfaces were located. Although a pathway from triplet NH + CO2 to singlet HNO + CO involving intersystem crossing in an HN-CO2 adduct was discovered, no pathway of sufficiently low activation energy was discovered to compare with that found in an earlier experiment [Rohrig, M.; Wagner, H. G. Proc. Combust. Inst. 1994, 25, 993.].     

A study of the unimolecular dissociation of the 2-buten-2-yl radical via the 193 nm photodissociation of 2-chloro-2-butene

This work investigates the unimolecular dissociation of the 2-buten-2-yl radical. This radical has three potentially competing reaction pathways: C-C fission to form CH3 + propyne, C-H fission to form H + 1,2-butadiene, and C-H fission to produce H + 2-butyne. The experiments were designed to probe the branching to the three unimolecular dissociation pathways of the radical and to test theoretical predictions of the relevant dissociation barriers. Our crossed laser-molecular beam studies show that 193 nm photolysis of 2-chloro-2-butene produces 2-buten-2-yl in the initial photolytic step. A minor C-Cl bond fission channel forms electronically excited 2-buten-2-yl radicals and the dominant C-Cl bond fission channel produces ground-state 2-buten-2-yl radicals with a range of internal energies that spans the barriers to dissociation of the radical. Detection of the stable 2-buten-2-yl radicals allows a determination of the translational, and therefore internal, energy that marks the onset of dissociation of the radical. The experimental determination of the lowest-energy dissociation barrier gave 31 +/- 2 kcal/mol, in agreement with the 32.8 +/- 2 kcal/mol barrier to C-C fission at the G3//B3LYP level of theory. Our experiments detected products of all three dissociation channels of unstable 2-buten-2-yl as well as a competing HCl elimination channel in the photolysis of 2-chloro-2-butene. The results allow us to benchmark electronic structure calculations on the unimolecular dissociation reactions of the 2-buten-2-yl radical as well as the CH3 + propyne and H + 1,2-butadiene bimolecular reactions. They also allow us to critique prior experimental work on the H + 1,2-butadiene reaction.     

Dissociation of the ground state vinoxy radical and its photolytic precursor chloroacetaldehyde: electronic nonadiabaticity and the suppression of the H+ketene channel

This work is a study of the competition between the two unimolecular reaction channels available to the vinoxy radical (CH(2)CHO), C-H fission to form H+ketene, and isomerization to the acetyl radical (CH(3)CO) followed by C-C fission to form CH(3) + CO. Chloroacetaldehyde (CH(2)ClCHO) was used as a photolytic precursor to the vinoxy radical in its ground state; photodissociation of chloroacetaldehyde at 193 nm produces vinoxy radicals with internal energies spanning the G3//B3LYP calculated barriers to the two available unimolecular reaction channels. The onset of the CH(3) + CO channel, via isomerization to the acetyl radical, was found to occur at an internal energy of 41 +/- 2 kcal/mol, agreeing well with our calculated isomerization barrier of 40.8 kcal/mol. Branching to the H+ketene channel was too small to be detected; we conclude that the branching to the H+ketene channel must be at least a factor of 200 lower than what is predicted by a RRKM analysis based on our electronic structure calculations. This dramatic result may be explained in part by the presence of a conical intersection at planar geometries along the reaction coordinate leading to H+ketene, which results in electronically nonadiabatic recrossing of the transition state.     

Dissociation channels of the 1-buten-2-yl radical and its photolytic precursor 2-bromo-1-butene

The work presented here is the first in a series of studies that use a molecular beam scattering technique to investigate the unimolecular reaction dynamics of C(4)H(7) radical isomers. Photodissociation of the halogenated precursor 2-bromo-1-butene at 193 nm under collisionless conditions produced 1-buten-2-yl radicals with a range of internal energies spanning the predicted barriers to the unimolecular reaction channels of the radical. Resolving the velocities of the stable C(4)H(7) radicals, as well as those of the products, allows for the identification of the energetic onset of each dissociation channel. The data show that radicals with at least 30.7 +/- 2 kcal/mol of internal energy underwent C-C fission to form allene + methyl, and radicals with at least 36.7 +/- 4 kcal/mol of internal energy underwent C-H fission to form H + 1-butyne and H + 1,2-butadiene; both of these observed barriers agree well with the G3//B3LYP calculations of Miller. HBr elimination from the parent molecule was observed, producing vibrationally excited 1-butyne and 1,2-butadiene. In the subsequent dissociation of these C(4)H(6) isomers, the major channel was C-C fission to form propargyl + methyl, and there is also evidence of at least one of the possible H + C(4)H(5) channels. A minor C-Br fission channel produces 1-buten-2-yl radicals in an excited electronic state and with low kinetic energy; these radicals exhibit markedly different dissociation dynamics than do the radicals produced in their ground electronic state.     

Theoretical determinations of the ambient conformational distribution and unimolecular decomposition of n-propylperoxy radical

The conformational distribution and unimolecular decomposition pathways for the n-propylperoxy radical have been generated at the CBS-QB3, B3LYP/6-31+G and mPW1K/6-31+G levels of theory. At each of the theoretical levels, the 298 K Boltzmann distributions and rotational profiles indicate that all five unique rotamers of the n-propylperoxy radical can be expected to be present in significant concentrations at thermal equilibrium. At the CBS-QB3 level, the 298 K distribution of rotamers is predicted to be 28.1, 26.4, 19.6, 14.0, and 11.9% for the gG, tG, gT, gG', and tT conformations, respectively. The CBS-QB3 C-OO bond dissociation energy (DeltaH298 K) for the n-propylperoxy radical has been calculated to be 36.1 kcal/mol. The detailed CBS-QB3 potential energy surface for the unimolecular decomposition of the n-propylperoxy radical indicates that important bimolecular products could be derived from two 1,4-H transfer mechanisms available at T < 500 K, primarily via an activated n-propylperoxy adduct.     

Insights into the structure and reactivity of acylperoxo complexes in the Kochi-Jacobsen-Katsuki catalytic system. A density functional study

Structural properties of the acylperoxo complexes [(Salen)Mn(III)RCO(3)] (2) and [(Salen)Mn(IV)RCO(3)] (3), the critical intermediates in the Kochi-Jacobsen-Katsuki reaction utilizing organic peracids or O(2)/aldehydes as oxygen source, have been studied with the density functional theory. Four distinct isomers, cis(O,N), cis(N,O), cis(N,N), and trans, of these complexes have been located. The isomer 2-cis(O,N) in its quintet ground state, and nearly degenerate isomers 3-cis(O,N) and 3-cis(N,O) in their quartet ground states are found to be the lowest in energy among the other isomers. The O-O bond cleavage in the cis(O,N), cis(N,O), and trans isomers of 2 and 3 has been elucidated. In complex 3, the O-O bond is inert. On the contrary, in complex 2, the O-O bond cleaves via two distinct pathways. The first pathway occurs exclusively on the quintet potential energy surface (PES) and corresponds to heterolytic O-O bond scission coupled with insertion of an oxygen atom into an Mn-N(Salen) bond to form 2-N-oxo species; this pathway has the lowest barrier of 14.9 kcal/mol and is 15.6 kcal/mol exothermic. The second pathway is tentatively a spin crossover pathway. In particular, for 2-cis(O,N) and 2-cis(N,O) the second pathway proceeds through a crucial minimum on the seam of crossing (MSX) between the quintet and triplet PESs followed by heterolytic O-O cleavage on the triplet PES, and produces unusual triplet 2-cis(O,N)- and 2-cis(N,O)-oxo ([(Salen)Mn(V)(O)RCO(2)]) species; this pathway requires 12.8 kcal/mol and is 1.4 kcal/mol endothermic. In contrast, for the 2-trans isomer, spin crossing is less crucial and the O-O cleavage proceeds homolytically to generate 2-trans-oxo [(Salen)Mn(IV)(O)] species with RCO(2) radical; this pathway, however, cannot compete with that in 2-cis because it needs 21.9 kcal/mol for activation and is 15.3 kcal/mol endothermic. In summary, the O-O cleavage occurs predominantly in the 2-cis complexes, and may proceed either through pure high spin or spin crossover heterolytic pathway to produce 2-cis-oxo and 2-N-oxo species.     

Reaction mechanism of naphthyl radicals with molecular oxygen. 1. Theoretical study of the potential energy surface

Potential energy surfaces (PESs) of the reactions of 1- and 2-naphthyl radicals with molecular oxygen have been investigated at the G3(MP2,CC)//B3LYP/6-311G** level of theory. Both reactions are shown to be initiated by barrierless addition of O(2) to the respective radical sites of C(10)H(7). The end-on O(2) addition leading to 1- and 2-naphthylperoxy radicals exothermic by 45-46 kcal/mol is found to be more preferable thermodynamically than the side-on addition. At the subsequent reaction step, the chemically activated 1- and 2-C(10)H(7)OO adducts can eliminate an oxygen atom leading to the formation of 1- and 2-naphthoxy radical products, respectively, which in turn can undergo unimolecular decomposition producing indenyl radical + CO via the barriers of 57.8 and 48.3 kcal/mol and with total reaction endothermicities of 14.5 and 10.2 kcal/mol, respectively. Alternatively, the initial reaction adducts can feature an oxygen atom insertion into the attacked C(6) ring leading to bicyclic intermediates a10 and a10' (from 1-naphthyl + O(2)) or b10 and b10' (from 2-naphthyl + O(2)) composed from two fused six-member C(6) and seven-member C(6)O rings. Next, a10 and a10' are predicted to decompose to C(9)H(7) (indenyl) + CO(2), 1,2-C(10)H(6)O(2) (1,2-naphthoquinone) + H, and 1-C(9)H(7)O (1-benzopyranyl) + CO, whereas b10 and b10' would dissociate to C(9)H(7) (indenyl) + CO(2), 2-C(9)H(7)O (2-benzopyranyl) + CO, and 1,2-C(10)H(6)O(2) (1,2-naphthoquinone) + H. On the basis of this, the 1-naphthyl + O(2) reaction is concluded to form the following products (with the overall reaction energies given in parentheses): 1-naphthoxy + O (-15.5 kcal/mol), indenyl + CO(2) (-123.9 kcal/mol), 1-benzopyranyl + CO (-97.2 kcal/mol), and 1,2-naphthoquinone + H (-63.5 kcal/mol). The 2-naphthyl + O(2) reaction is predicted to produce 2-naphthoxy + O (-10.9 kcal/mol), indenyl + CO(2) (-123.7 kcal/mol), 2-benzopyranyl + CO (-90.7 kcal/mol), and 1,2-naphthoquinone + H (-63.2 kcal/mol). Simplified kinetic calculations using transition-state theory computed rate constants at the high-pressure limit indicate that the C(10)H(7)O + O product channels are favored at high temperatures, while the irreversible oxygen atom insertion first leading to the a10 and a10' or b10 and b10' intermediates and then to their various decomposition products is preferable at lower temperatures. Among the decomposition products, indenyl + CO(2) are always most favorable at lower temperatures, but the others, 1,2-C(10)H(6)O(2) (1,2-naphthoquinone) + H (from a10 and b10'), 1-C(9)H(7)O (1-benzopyranyl) + CO (from a10'), and 2-C(10)H(7)O (2-benzopyranyl) + O (from b10 and minor from b10'), may notably contribute or even become major products at higher temperatures.     

Theoretical Study on the Dehydrogenation Reaction of H2S by VS+ (3∑-)

The dehydrogenation reaction of H2S by the 3∑- ground state of VS+: VS+ + H2S → VS2+ + H2 has been studied by using Density Functional Theory (DFT) at the B3LYP/DZVP level. It is found that the reaction proceeds along two possible pathways (A and B) yielding two isomer dehydrogenation products VS2+-1 (3B2) and VS2+-2 (3A1), respectively. For both pathways,the reaction has a two-step-reaction mechanism that involves the migration of two hydrogen atoms from S2 to V+, respectively. The migration of the second hydrogen via TS3 and that of the first via TS4 are the rate-determining steps for pathways A and B, respectively. The activation energy is 17.4 kcal/mol for pathway A and 22.8 kcal/mol for pathway B relative to the reactants. The calculated reaction heat of 9.9 kcal/mol indicates the endothermicity of pathway A and that of -11.9 kcal/mol suggests the exothermicity of pathway B.     

Reactions of 1,3-cyclohexadiene with singlet oxygen. A theoretical study.

A thorough study of the reaction of singlet oxygen with 1,3-cyclohexadiene has been made at the B3LYP/6-31G(d) and CASPT2(12e,10o) levels. The initial addition reaction follows a stepwise diradical pathway to form cyclohexadiene endoperoxide with an activation barrier of 6.5 kcal/mol (standard level = CASPT2(12e,10o)/6-31G(d); geometries and zero-point corrections at B3LYP/6-31G(d)), which is consistent with an experimental value of 5.5 kcal/mol. However, as the enthalpy of the transition structure for the second step is lower than the diradical intermediate, the reaction might also be viewed as a nonsynchronous concerted reaction. In fact, the concertedness of the reaction is temperature dependent since entropy differences create a free energy barrier for the second step of 1.8 kcal/mol at 298 K. There are two ene reactions; one is a concerted mechanism (DeltaH(double dagger) = 8.8 kcal/mol) to 1-hydroperoxy-2,5-cyclohexadiene (5), while the other, which forms 1-hydroperoxy-2,4-cyclohexadiene (18), passes through the same diradical intermediate (9) as found on the pathway to endoperoxide. The major pathway from the endoperoxide is O-O bond cleavage (22.0 kcal/mol barrier) to form a 1,4-diradical (25), which is 13.9 kcal/mol less stable than the endoperoxide. From the diradical, two low-energy pathways exist, one to epoxyketone (29) and the other to the diepoxide (27), where both products are known to be formed experimentally with a product ratio sensitive to the nature of substitutents. A significantly higher activation barrier leads to C-C bond cleavage and direct formation of maleic aldehyde plus ethylene.     

Thermal decomposition of peroxy acetyl nitrate CH3C(O)OONO2

The thermal decomposition of peroxy acetyl nitrate (PAN) is investigated by low pressure flash thermolysis of PAN highly diluted in noble gases and subsequent isolation of the products in noble gas matrices at low temperatures and by density functional computations. The IR spectroscopically observed formation of CH3C(O)OO and H2CCO (ketene) besides NO2, CO2, and HOO implies a unimolecular decay pathway for the thermal decomposition of PAN. The major decomposition reaction of PAN is bond fission of the O-N single bond yielding the peroxy radical. The O-O bond fission pathway is a minor route. In the latter case the primary reaction products undergo secondary reactions whose products are spectroscopically identified. No evidence for rearrangement processes as the formation of methyl nitrate is observed. A detailed mapping of the reaction pathways for primary and secondary reactions using quantum chemical calculations is in good agreement with the experiment and predicts homolytic O-N and O-O bond fissions within the PAN molecule as the lowest energetic primary processes. In addition, the first IR spectroscopic characterization of two rotameric forms for the radical CH3C(O)OO is given.     

The very low-pressure pyrolysis of phenyl ethyl ether,phenyl allyl ether,and benzyl methyl ether and the enthalpy of formation of the phenoxy radical

A value of the enthalpy of formation of the phenoxy radical in the gas phase, ΔH°_,298K (?O·, g) = 11.4 ± 2.0 kcal/mol, has been obtained from the kinetic study of the unimolecular decompositions of phenyl ethyl ether, phenyl allyl ether, and benzyl methyl ether

1 Trivial names for ethoxy benzene, 2-propenoxy (allyloxy) benzene, and α-methoxytoluene, respectively

at very low pressures. Bond fission, producing phenoxy or benzyl radicals, respectively, is the only mode of decomposition in each case. The present value leads to a bond dissociation energy BDE(?O—H) = 86.5 ± 2 kcal/mol,

2 1 kcal = 4.18674 kJ (absolute)

in good agreement with recent estimates made on the basis of competitive oxidation steps in the liquid phase. A comparison with bond dissociation energies of aliphatic alcohols, BDE(RO—H) = 104 kcal/mol, reveals that the stabilization energy of the phenoxy radical (17.5 kcal/mol) is considerably greater than the one observed for the isoelectronic benzyl radical (13.2 kcal/mol). Decomposition of phenoxy radicals into cyclopentadienyl radicals and CO has been observed at temperatures above 1000°K, and a mechanism for this reaction is proposed.     

New insight into the gas-phase bimolecular self-reaction of the HOO radical

The singlet and triplet potential energy surfaces (PESs) for the gas-phase bimolecular self-reaction of HOO*, a key reaction in atmospheric environments, have been investigated by means of quantum-mechanical electronic structure methods (CASSCF and CASPT2). All the reaction pathways on both PESs consist of a first step involving the barrierless formation of a prereactive doubly hydrogen-bonded complex, which is a diradical species lying about 8 kcal/mol below the energy of the reactants at 0 K. The lowest energy reaction pathway on both PESs is the degenerate double hydrogen exchange between the HOO* moieties of the prereactive complex via a double proton transfer mechanism involving an energy barrier of only 1.1 kcal/mol for the singlet and 3.3 kcal/mol for the triplet at 0 K. The single H-atom transfer between the two HOO* moieties of the prereactive complex (yielding HOOH + O2) through a pathway keeping a planar arrangement of the six atoms involves a conical intersection between either two singlet or two triplet states of A' and A" symmetries. Thus, the lowest energy reaction pathway occurs via a nonplanar cisoid transition structure with an energy barrier of 5.8 kcal/mol for the triplet and 17.5 kcal/mol for the singlet at 0 K. The simple addition between the terminal oxygen atoms of the two HOO* moieties of the prereactive complex, leading to the straight chain H2O4 intermediate on the singlet PES, involves an energy barrier of 7.3 kcal/mol at 0 K. Because the decomposition of such an intermediate into HOOH + O2 entails an energy barrier of 45.2 kcal/mol at 0 K, it is concluded that the single H-atom transfer on the triplet PES is the dominant pathway leading to HOOH + O2. Finally, the strong negative temperature dependence of the rate constant observed for this reaction is attributed to the reversible formation of the prereactive complex in the entrance channel rather than to a short-lived tetraoxide intermediate.     

Theoretical study of reaction pathways of dibenzofuran and dibenzo-p-dioxin under reducing conditions

A density functional theory (DFT) study was carried out to investigate possible reactions of dibenzofuran (DF) and dibenzo-p-dioxin (DD) in a reducing environment. Reaction energies, barrier heights, and molecular parameters for reactants, intermediates, products, and transition states have been generated for a wide range of possible reactions. It was found that C-O beta-scission in DF incurs a very large energy barrier (107 kcal/mol at 0 K), which is just 3 kcal/mol less than the direct H fission from C-H in DF to form dibenzofuranyl radicals. It was found that DF allows direct H addition to C1-C4 and C6-C9 as well as addition of two H atoms from a hydrogen molecule at sites 1 and 9 of DF. A bimolecular reaction of DF with H or H2 is found to have a significantly lower barrier than unimolecular decomposition through C-O beta-scission. An explanation for the predominance of polychlorinated dibenzofurans (PCDF) over polychlorinated dibenzo-p-dioxins (PCDD) in municipal waste pyrolysis is presented in the view of the facile conversion of DD into DF through ipso-addition at the four C sites of the two C-O-C central bonds in DD.     

Characterization of the methoxy carbonyl radical formed via photolysis of methyl chloroformate at 193.3 nm

This study investigates two features of interest in recent work on the photolytic production of the methoxy carbonyl radical and its subsequent unimolecular dissociation channels. Earlier studies used methyl chloroformate as a photolytic precursor for the CH3OCO, methoxy carbonyl (or methoxy formyl) radical, which is an intermediate in many reactions that are relevant to combustion and atmospheric chemistry. That work evidenced two competing C-Cl bond fission channels, tentatively assigning them as producing ground- and excited-state methoxy carbonyl radicals. In this study, we measure the photofragment angular distributions for each C-Cl bond fission channel and the spin-orbit state of the Cl atoms produced. The data shows bond fission leading to the production of ground-state methoxy carbonyl radicals with a high kinetic energy release and an angular distribution characterized by an anisotropy parameter, beta, of between 0.37 and 0.64. The bond fission that leads to the production of excited-state radicals, with a low kinetic energy release, has an angular distribution best described by a negative anisotropy parameter. The very different angular distributions suggest that two different excited states of methyl chloroformate lead to the formation of ground- and excited-state methoxy carbonyl products. Moreover, with these measurements we were able to refine the product branching fractions to 82% of the C-Cl bond fission resulting in ground-state radicals and 18% resulting in excited-state radicals. The maximum kinetic energy release of 12 kcal/mol measured for the channel producing excited-state radicals suggests that the adiabatic excitation energy of the radical is less than or equal to 55 kcal/mol, which is lower than the 67.8 kcal/mol calculated by UCCSD(T) methods in this study. The low-lying excited states of methylchloroformate are also considered here to understand the observed angular distributions. Finally, the mechanism for the unimolecular dissociation of the methoxy carbonyl radical to CH3 + CO2, which can occur through a transition state with either cis or, with a much higher barrier, trans geometry, was investigated with natural bond orbital computations. The results suggest donation of electron density from the nonbonding C radical orbital to the sigma* orbital of the breaking C-O bond accounts for the additional stability of the cis transition state.     

New insights into the mechanism of the Schiff base formation catalyzed by type I dehydroquinate dehydratase from <Emphasis Type="Italic">S. enterica</Emphasis>

The Schiff base formation catalyzed by type I dehydroquinate dehydratase (DHQD) from Salmonella enterica has been studied by molecular docking, molecular dynamics simulation, and quantum chemical calculations. The substrate locates stably a similar position as the Schiff base intermediate observed in the crystal structure and forms strong hydrogen bonds with several active site residues. This binding mode is different from that of several other Schiff base enzymes. Then, the quantum chemical model has been constructed and the fundamental reaction pathways have been explored by performing quantum chemical calculation. The energy barrier of the previously proposed reaction pathway is calculated to be 30.7 kcal/mol, which is much higher than the experimental value of 14.3 kcal/mol of the whole dehydration reaction by type I DHQD from S. enterica. It means that this pathway is not favorable in energy. Therefore, a new and unexpected reaction pathway has been investigated with the favorable and reasonable energy barrier of 12.1 kcal/mol. The complicated role of catalytic His143 residue has also been elucidated that it mediates two proton transfers to facilitate the reaction. Moreover, the similarity and the difference between these two reaction pathways have been analyzed in detail. The new structural and mechanistic insights may direct the design of the inhibitors of type I dehydroquinate dehydratase as non-toxic antimicrobials, antifungals, and herbicides.     

Reaction of stabilized Criegee intermediates from ozonolysis of limonene with sulfur dioxide: ab initio and DFT study

The mechanism of the reaction of the sulfur dioxide (SO(2)) with four stabilized Criegee intermediates (stabCI-CH(3)-OO, stabCI-OO, stabCIx-OO, and stabCH(2)OO) produced via the ozonolysis of limonene have been investigated using ab initio and DFT (density functional theory) methods. It has been shown that the intermediate adduct formed by the initiation of these reactions may be followed by two different reaction pathways such as H migration reaction to form carboxylic acids and rearrangement of oxygen to produce the sulfur trioxide (SO(3)) from the terminal oxygen of the COO group and SO(2). We found that the reaction of stabCI-OO and stabCH(2)OO with SO(2) can occur via both the aforementioned scenarios, whereas that of stabCI-CH(3)-OO and stabCIx-OO with SO(2) is limited to the second pathway only due to the absence of migrating H atoms. It has been shown that at the CCSD(T)/6-31G(d) + CF level of theory the activation energies of six reaction pathways are in the range of 14.18-22.59 kcal mol(-1), with the reaction between stabCIx-OO and SO(2) as the most favorable pathway of 14.18 kcal mol(-1) activation energy and that the reaction of stabCI-OO and stabCH(2)OO with SO(2) occurs mainly via the second reaction path. The thermochemical analysis of the reaction between SO(2) and stabilized Criegee intermediates indicates that the reaction of SO(2) and stabilized Criegee intermediates formed from the exocyclic primary ozonide decomposition is the main pathway of the SO(3) formation. This is likely to explain the large (~100%) difference in the production rate in the favor of the exocyclic compounds observed in recent experiments on the formation of H(2)SO(4) from exocyclic and endocyclic compounds.     

锗烯与异硫氰酸反应机理的量子化学研究

采用密度泛函理论B3LYP方法研究了GeH2自由基与HNCS的反应机理,并在B3LYP/6-311++G**水平上对反应物,中间体,过渡态进行了全几何参数优化,通过频率分析和IRC确定中间体和过渡态。为了得到更精确的能量值,用QCISD(T)/6-311++G**方法计算了各个驻点的单点能,计算结果表明单重态的锗烯与异硫氰酸的反应有抽提硫、插入N-H键、抽提亚氨基的路径,而经由三元环中间体的抽提硫反应GeH2+HNCS→IM3→TS2→IM4→TS3→IM5→GeH2S+HNC(P1),反应能垒最低,为主反应通道,甲锗硫醛和异氰氢酸为主产物。锗烯经由四元环中间体抽提硫的反应为竞争反应通道。     

Theoretical calculation of activation energy barrier from vibrational frequencies for the reaction of O (3P) with CHFCl

The reaction of the oxygen atom with the chlorofluoromethyl radical has been investigated fully by the B3LYP method at the 6‐311++G** basis set level. Two new approaches of the adiabatic (actual) activation energy between all of the intermediates and transition states (TSs) are calculated using the computed frequencies. TSs are activated species: When intermediates agitated spectrographically, the TSs come into being. So the vibrational quantum number ν must be taken into account, and the agitated radicals can be considered as a whole to calculate the adiabatic activation energy, or the potential energy barrier. All IMs and TSs are assigned to their spectroscopic terms to determine the vibrational quantum numbers. This appears to be a good way to estimate activation energy barriers of all reaction channels. © 2002 Wiley Periodicals, Inc.; DOI 10.1002/qua.2002;10126