Conformations and vibrational spectra of 2-chloro-3-fluoro-1-propene and 2-bromo-3-fluoro-1-propene

The infrared spectra of 2-chloro-3-fluoro- and 2-bromo-3-fluoro-1-propene as vapours and liquids were recorded in the region 4000–4050 cm^?1. Additional spectra of the amorphous and crystalline solids at ?170 °C and of the liquids in polar and non-polar solvents were recorded between 4000 and 200 cm^?1.Raman spectra, including semi-quantitative polarization measurements of the liquids were obtained. Spectra were also recorded with the samples dissolved in polar and non-polar solvents, and unannealed as well as annealed crystalline solids were studied at ?180 °C.Approximately 14 vibrational bands present in the spectra of the liquids, solutions and the glassy solids vanished in the infrared and Raman spectra of the crystals. From various criteria it can be concluded with certainty that the more polar (gauche) and less polar (cis) conformers were present in the crystalline chloro- and bromo- compounds, respectively. From infrared and Raman band intensities it was estimated that the conformational equilibrium in chlorofluoro-propene was highly displaced towards cis in the vapour, with both conformers approximately equally abundant in the liquid state (30 °C). For bromofluoro- propene the equilibrium was still further displaced towards the cis conformer.A striking similarity between the spectra of the two compounds was ob- served. The fundamental frequencies have been tentatively assigned and checked by force constant calculations. Dipole moments and relative stabilities of the conformers were estimated by a CNDO calculation.     

Molecular structure and conformation of 2,3-dichloro-1-propene as determined by gas-phase electron diffraction

The molecular structure and conformation of 2,3-dichloro-1-propene have been determined by gas-phase electron diffraction at nozzle temperatures of 24, 90 and 273°C. The molecules exist as a mixture of two conformers with the chlorine atoms anti (torsion angle ∠φ = 0°) or gauche (∠φ = 109°) to each other and with the anti form the more stable. The composition (mole fraction) of the vapor with uncertainties estimated at 2σ was found to be 0.55 (0.08), 0.49 (0.08) and 0.41 (0.10) at 24, 90 and 273°, respectively. These values correspond to an energy difference with estimated standard deviation ΔE° = E°_g-E°_a = 0.7 ± 0.3 kcal mol^?1 and an entropy difference ΔS° = S°_g-S°_a = 0.6 ± 0.9 cal mol^?1 K^?1. Some of the diffraction results, together with spectroscopic observations, permit the evaluation of an approximate torsional potential function of the form 2V = V₁ (1 - cos φ) + V₂ (1 - cos 2φ) + V₃ (1 - cos 3φ); the results are V₁ = 4.4 ± 0.5, V₂ = ?2.9 ± 0.5 and V₃ = 4.8 ± 0.2, all in kcal mol^?1. The results at 24°C for the distance (r_a) and angle (∠_α) parameters, with estimated uncertainties of 2σ, are: r(C_sp²-H) = 1.098(0.020)Å, r(C_sp³-H) = 1.103(0.020)Å, r(CC) = 1.334(0.009)Å, r(C-C) = 1.504(0.013)Å, r(C_sp²-Cl) = 1.752(0.021)Å, r(C_sp³-Cl) = 1.776(0.020)Å, ∠C-CC = 127.6(1.1)°, ∠C_sp³-C_sp²-Cl = 110.2(1.0), ∠C_sp²-C_sp³-Cl = 113.1(1.2)°, ∠H-C_sp³-H = 109.5° (assumed), ∠CC-H = 120.0° (assumed) and ∠φ = 108.9(3.4)°.     

Synthesis and conformation of 2-fluoro-3-ketoestrane derivatives

Treatment of 3-methoxy-17β-acetoxyestra-2,5(10)-diene with perchloryl fluoride in aqueous dioxane or tetrahydrofuran yielded a 2-fluoro-3-ketosteroid with unusual properties. Unlike the known 2-fluoro-19-nortestosterone, this fluoroketone possessing a 5(10) double bond easily lost hydrogen fluoride to form estradiol 17-acetate; aromatization took place on melting, on exposure to pyridine or acid or even during chromatography on silica gel or Florisil. Because of the Δ-5(10) structure and the absence of the C₁₉ Me group, it is difficult to infer the exact orientation of the 2-fluorine substituent from its effect on the NMR spectrum, CD or the CO absorption in the IR. However, the properties of certain derivatives suggested that the fluorine substituent was 2β. Treatment of the unsaturated fluorketone with peracid gave a mixture of epoxides which on basic hydrolysis furnished two 2-fluoro-10-hydroxy-17-acetoxyestr-4-en-3-ones epimeric at C₁₀. The UV and NMR spectra of the 10-hydroxy epimer indicated an equatorial 2β-orientation of fluorine, whereas the 10β-hydroxy epimer showed an axial 2β-fluorine substituent which could be isomerized by acid to the more stable equatorial 2-configuration.     

Molecular structure and conformation of gaseous vinyldimethylchlorosilane as determined by electron diffraction

The molecular structure of vinyldimethylchlorosilane has been determined by gas phase electron diffraction at room temperature. The least squares values of the bond lengths (r_g) and bond angles (∠_α) are : r(CH) = 1.086(6) Å, r(CC) = 1.347(5) Å, r(SiC=) = 1.838(6) Å, r(SiC) = 1.876(3) Å, r(SiCl) = 2.078(2) Å, ∠CCSi = 127.8° (1.2) and ∠=CSiCl = 107° (1). Models with pure syn form and a mixture of syn and gauche gave equally good agreement with the diffraction data.     

Molecular structure and conformation of cis-1,3- dichloro-1-propene as determined by gas phase electron diffraction

The molecular structure and conformation of cis-1,3-dichloro-1-propene have been determined by gas phase electron diffraction at a nozzle temperature of 90°C. The molecule exists in a form in which the chlorine atom of the methyl group and the carbon-carbon double bond are gauche to one another. The results for the distance (r_g) and angle (∠_α) parameters are: r(C-H) = 1.078(10)Å, r(CC) = 1.340(5)Å, r(C-C) = 1.508(7)Å, r( =C-Cl) = 1.762(3)Å, r(C-Cl) = 1.806(3)Å, ∠Cl-C-C = 111.7°(1.8), ∠(CC-C) = 125.5°(1.5), ∠Cl-CC = 124.6°(1.6) and ∠H-C-Cl = 111°(5). The torsion-sensitive distances close to the gauche form can be approximated using a dynamic model with a quartic double minimum potential function of the form V(Φ) = V₀[1 + ($\text{Φ}\text{Φ}{}_0$⁴ - 2($\text{Φ}\text{Φ}{}_0$)²], where V_o = 1.1(8) kcal mol^?1 and Φ₀ = 56°(5) (Φ = 0 corresponds to the anti form).     

Molecular,crystal, and electronic structure of 3-aminocarbonyl-1-phenyl-5-chloro-2-iminopyridone

Riga Polytechnical Institute. Institute of Organic Synthesis, Academy of Sciences of the Latvian SSR. Translated from Zhurnal Strukturnoi Khimii, Vol. 29, No. 5, pp. 169–172, September–October, 1988.     

Molecular structure and conformation of gaseous chloroacetyl chloride as determined by electron diffraction

Chloroacetyl chloride is studied by gas-phase electron diffraction at nozzle-tip tempera- tures of 18, 110 and 215°C. The molecules exist as a mixture of anti and gauche confor- mers with the anti form the more stable. The composition (mole fraction) of the vapor with uncertainties estimated at 2σ is found to be 0.770 (0.070), 0.673 (0.086) and 0.572 (0.086) at 18, 110 and 215°C, respectively. These values correspond to an energy difference with estimated standard deviation ΔE^o = E^o_g -E^o_a = 1.3 ± 0.4 kcal mol^?1 and an entropy difference ΔS^o = S^o_g -S^o_a = 0.7 ± 1.1 cal mol^?1 K^?1. Certain of the diffraction results permit the evaluation of an approximate torsional potential function of the form 2V = V₁(1 - cos φ) + V₂(1 - cos 2φ) + V₃(1 - cos 3φ); the results are V₁ = 1.19 ± 0.33, V₂ = 0.56 ± 0.20 and V₃ = 0.94 ± 0.12, all in kcal mol^?1. The results for the distance (r_a), angle (_∠α) and r.m.s. amplitude parameters obtained at the three temperatures are entirely consistent. At 18°C the more important parameters are, with estimated uncertainties of 2σ, r(C-H) = 1.062(0.030) Å, r(CO) = 1.182(0.004) Å, r(C-C) = 1.521(0.009) Å. r(CO-Cl) = 1.772(0.016) Å, r(CH₂-Cl) = 1.782(0.018) Å, ∠C-C-0 = 126.9(0.9)°, ∠CH₂-CO-C1 = 110.0(0.7)°,∠CO-CH₂-C1 = 112.9(1–7)°, ∠H-C-H = 109.5° (assumed), ∠φ (gauche torsion angle relative to 0° for the anti form) = 116.4(7.7)°, δ (r.m.s. amplitude of torsional vibration in the anti conformer) == 17.5(4.2)°.     

Molecular structure of 1-phenyl-2-chloro-3-(meta-nitrophenyl)-2,3-epoxypropanone

X-ray analysis was used to determined the structure of 1-phenyl-2-chloro-3-(m-nitrophenyl)-2,3-epoxypropanone, obtained by reacting phenacyl dihydrochloride with metanitrobenzaldehyde under Darzen's reaction conditions. The bulky m-nitrophenyl and benzoyl substituents were located in the trans position relative to the chloroepoxide fragment, which was found to stabilize when the m-nitrophenyl substituent was introduced.A. E. Arbuzov Institute of Organic and Physical Chemistry, Kazan Scientific Center, Russian Academy of Sciences, Kazan 420083. Translated from Khimiya Geterotsiklicheskikh Soedinennii, No. 9, pp. 1172–1175, September, 1994. Original article submitted May 5, 1994.     

3-Bromo-2-methyl-1-propene: molecular structure and conformation in the gas phase as determined by electron diffraction and molecular mechanics calculation

A gas phase electron diffraction study of 3-bromo-2-methyl-1-propene shows that there is predominantly a gauche conformer present. Data recorded at 20 and 180°C show 4(8) and 5(4)% respectively of a second confomer with a planar heavy atom skeleton. The gauche structural results in terms of r_a distances and angles at 20°C were found to be: r(C---C) = 1.331(9) Å, r(C---CH₂Br) = 1.484(6) Å, r(C---CH₃) — r(C---CH₂Br) = 0.017 Å, (assumed), r(C---Br) = 1.965(6) Å, C=C---CH₂Br = 121.5(0.7)°, C=C---CH₂Br — C=C---CH₃ = 0.7° (constraint from molecular mechanics calculation), C---C---Br = 112.2(0.5)°, torsional ANGLE = 112.5(2.2)°. Uncertainties are given as 2σ, where σ includes uncertainties due to correlation among observations, electron wavelength and other parameters used in the data reduction. The results obtained from the 180°C data agree very well with those given above. The molecular mechanics calculations yield information consistent with the experimental results.     

Molecular structure of 1-phenyl-1-fluoro-5-methylquasisilatrane (2-phenyl-2-fluoro-1,3-dioxa-6-aza-6-methyl-2-silacyclooctane)

The crystal and molecular structure of 1-phenyl-1-fluoro-5-methylquasisilatrane PhFSi(OCH₂CH₂)₂NMe was investigated by X-ray diffraction at 100 K. The coordination polyhedron of the silicon atom in the molecule is a slightly distorted trigonal bipyramid containing fluorine and nitrogen atoms in the axial positions and two endocyclic oxygen atoms and the carbon atom of the phenyl group at three vertices of the equatorial plane.     

Molecular and crystal structure of 5Z-carboxymethylene-2-chloro-4,4-dimethoxy-3-N,N-dimethylaminocyclopent-2-en-1-one

In the crystal, the 5Z-carboxymethylene-2-chloro-4,4-dimethoxy-3-N,N-dimethyl-aminocyclopent-2-en-1-one molecule has an intramolecular hydrogen bond (stabilized in the chelate form) between the proton of the carboxy group and the oxygen atom of the keto group. The methoxy groups are in an antiperiplanar conformation and are synclinal with respect to the dimethylamino group and the double bond of the carboxylmethylene fragment. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 1979–1981, November, 1997.     

The structure of X traps in naphthalene crystals doped with 2-fluoro-, 2-chloro- and 2-bromonaphthalene

The metastable triplet state of naphthalene molecules in a naphthalene single crystal, perturbed by the presence of halogen-substituted naphthalene molecules, was investigated at liquid-helium temperature by means of electron spin resonance. The results were used to determine the orientation of the principal axes of the perturbed molecules with respect to the crystallographic axes. Since zero-field resonance data were availale and because of an improved method for the analysis, these angles could be determined more accurately than reported previously.     

Molecular structure of 1-methyl-1-fluoroquasisilatrane (2-methyl-2-fluoro-1,3-dioxa-6-aza-2-silacyclooctane)

The molecular structure of 1-methyl-1-fluoroquasisilatrane (2-methyl-2-fluoro-1,3-dioxa-6-aza-2-silacyclooctane) MeFSi(OCH₂CH₂)₂NH (I) is determined by single crystal X-ray diffraction at 100 K. The coordination polyhedron of the silicon atom in this molecule is a slightly distorted trigonal bipyramid with an NH group and a strongly electron-withdrawing fluorine atom in the axial positions, and two endocyclic oxygen atoms and a CH₃ group in three vertices of the equatorial plane. The axial angle N→SiF is 171°. The length of the transannular donor-acceptor bond N→Si (2.058 Å) is as small as in 1-fluorosilatrane. The axial bond F-Si (1.660 Å) is longer than that in 1-fluorosilatrane and tetrahedral silicon compounds.     

Molecular structure and conformation of gaseous bromoacetyl chloride and bromoacetyl bromide as determined by electron diffraction

Bromoacetyl chloride and bromoacetyl bromide are studied by gas phase electron diffraction at nozzle-tip temperatures of 70°C and 77°C, respectively. Both compounds exist as mixtures of anti and gauche conformers. The mole fraction anti, with uncertainties estimated at 2σ, was found to be 0.474(0.080) for bromoacetyl chloride and 0.615(0.069) for bromoacetyl bromide. The results for the distance (r_a)and angle (∠α) parameters, with parenthesized uncertainties of 2σ including estimated uncertainty in the electron wave length and correlation effects are as follows: (1) bromoacetyl chloride, r(C-H) = 1.086(0.062) Å, r(CO) = 1.188(0.009) Å, r(C-C) = 1.519(0.018) Å, r(C-Cl) = 1.789(0.011) Å, r(C-Br) = 1.935(0.012) Å, ∠C-CO = 127.6(1.3)°, ∠C-C-Cl = 111.3(1.1)°, ∠C-C-Br = 111.0(1.5)°, ∠H-C-H = 109.5°(assumed), $\text{}\text{?}$/o (gauche torsion angle relative to 0° for the anti form) = 110.0°(assumed); (2) bromoacetyl bromide, r(C-H) =1.110(0.088) Å, r(C=O) = 1.175(0.013) Å, r(C-C) = 1.513(0.020) Å, r(CO-Br) = 1.987(0.020) Å, r(CH₂-Br) = 1.915(0.020) Å, ∠C-CO = 129.4(1.7)°, ∠CH₂-CO-Br = 110.7(1.5)°, ∠CO-CH₂-Br = 111.7(1.8)°, ∠H-C-H = 109.5°(assumed), ∠ø (gauche torsion angle relative to 0° for the anti form) = 105.0°(assumed). The structural results are discussed in connection with the structures of related molecules.     

1-Chloro-1-(trichlorovinyl)cyclopropane : Molecular structure and conformation in the gaseous phase as determined by electron diffraction

A gas phase electron diffraction investigation of 1-chloro-1-(trichlorovinyl)cyclopropane at 65° showed the existence of one conformer having a perpendicular arrangement of the cyclopropyl- and the trichlorovinylgroup, with torsional angle τ = 91(3)° relative to τ = 180° for the antiperiplanar conformer (CCl-CClanti arrangement). Both the experimental data and a molecular mechanics calculation indicate the lower barrier toward the antiperiplanar form,less than 40 kJ · mol^-1. The second barrier was by molecular mechanics calculated to 60 kJ · mol^-1.     

Molecular structure and conformation of dinitrosylheme

DFT calculations indicate a surprisingly strong cis orientational preference of the two NO ligands of dinitrosylheme, a unique reactive species of potential biological relevance that has been recently generated and spectroscopically characterized at low temperature. While a trans centrosymmetric conformation has been proposed on the basis of IR spectroscopic data, DFT calculations favor a cis C2v conformation of the two NOs over a trans orientation by about 20 kcal/mol.