Structural Inhomogeneity of High‐Density Amorphous Ice

Modeling of highdensity amorphous ice (1.17 g/cm³) was carried out at 100 K (576 species) by a moleculardynamics method using the Poltev–Malenkov potential. The revealed structural inhomogeneity of the model is similar to that established earlier for water and lowdensity amorphous ice. Different structural zones (i.e., zones with different degrees of deviation of the configuration of the nearest neighbor environment from a regular tetrahedron and zones with different volumes of Voronoi polyhedra) show different dynamic characteristics of water molecules (mean square of displacement of the center of mass and vibration spectrum).     

Angular scattering using parameterized S matrix elements for the H + D2(v(i) = 0, j(i) = 0) → HD(v(f) = 3, j(f) = 0) + D reaction: an example of Heisenberg's S matrix programme

A neglected topic in the theory of reactive scattering is the use of parameterized scattering (S) matrix elements to calculate differential cross sections (DCSs). We construct four simple parameterizations, whose moduli are smooth step-functions and whose phases are quadratic functions of the total angular momentum quantum number. Application is made to forward glory scattering in the DCS of the H + D(2)(v(i) = 0, j(i) = 0) → HD(v(f) = 3, j(f) = 0) + D reaction at a translational energy of 1.81 eV, where v and j are vibrational and rotational quantum numbers respectively. The parameterized S matrix elements can reproduce the forward scattering for centre-of-mass reactive scattering angles up to 30° and can identify the total angular momenta (equivalently, impact parameters) that contribute to the glory. The theoretical techniques employed to analyze structure in the DCS include: nearside-farside theory, local angular momentum theory--in both cases incorporating resummations of the partial wave series representation of the scattering amplitude--and the uniform semiclassical theory of forward glory scattering. Our approach is an example of Heisenberg's S matrix programme, in which no potential energy surface is used. Our calculations for the DCS using the four parameterized S matrix elements are counterexamples to the following universal statements often found in the chemical physics literature: "every molecular scattering investigation needs detailed information about the interaction potential," and "an accurate potential energy surface is an essential element in carrying out simulations of a chemical reaction". Both these statements are false.     

有机显微组分的二次离子质谱研究

采用二次离子质谱技术（ＳＩＭＳ）对煤及源岩中不同成熟度的镜质体、丝质体、沥青和笔石进行了详细研究。结果表明不同显微组分具有不同的ＳＩＭＳ谱图，反映出其化学组成和结构的差异性，且ＣＨ２＾＋／ＣＨ３＾＋参数变化趋势可以用来评价有机组分的热演化规律。同时说明ＳＩＭＳ技术是有机显微组分化学成分和结构研究的有效手段。     

Monte Carlo模拟方法研究管道受限对高分子链缠结的影响

采用基于格子模型的Monte Carlo模拟方法,考察了链长分别为30和250的线形高分子在管道内受限状态下的尺寸及扩散性质.结果表明,当线形高分子的链长低于其缠结链长时,其受限条件下高分子的性质随受限程度的变化而单调变化;而当线形高分子的链长大于缠结链长时,高分子的性质表现出非单调性,进而说明受限具有一定程度的解缠结...     

Mass distribution, polydispersity and focusing properties of carrier ampholytes for IEF II: pH 4-6 intervals

For studying the M(r) distribution and number of species in narrow-range (2 pH-unit wide, in the nominal pI 4-6 interval) carrier ampholytes from four commercial sources (Bio-Lyte, Servalyt, Ampholine and Pharmalyte), a 2-D technique was adopted consisting of a focusing step in a liquid phase (Rotofor, yielding 20 fractions) followed by orthogonal CE in both, acidic and basic buffers. As a final step, every other fraction was analyzed by CE-MS. The findings: Ampholine contains 80 different M(r) compounds, in the M(r) interval 203 to 893 Da, for a total of 325 isoforms. Bio-Lyte consists of 66 different M(r) species, in the M(r) range 388 to 835 Da, for a total of 436 isoforms. Servalyt is made of 199 different M(r) compounds, in the M(r) interval 204 to 907 Da, for a total of 1302 isoforms. Pharmalyte pH 4-6.5, comprises 217 amphoteres, in the M(r) range 150 to 1179 Da, for a total of 812 isoforms. Pharmalyte appears to be the best brand, with the vast majority of species focusing sharply at their pI position and <5% "poor" species, distributed along the entire pH gradient, denoting an extremely shallow pH/mobility curve across the pI value.     

Mass distribution, polydispersity and focusing properties of carrier ampholytes for IEF. III: pH 2.5-4 intervals

To study the molecular mass distribution and number of species in narrow-range (2-pH-unit wide, in the nominal pI 2-4 or 3-5 interval) carrier ampholytes from four commercial sources (Bio-Lyte, Servalyt, Ampholine and Pharmalyte), a 2-D technique was adopted, consisting of a preparative focusing step in a Rotofor instrument, followed by analysis of every other collected fraction (10 out of 20) by CE-MS. It was found that Ampholine pH 3.5-5 contains 105 different molecular mass (M(r)) compounds, in the M(r) interval 205-965 Da, for a total of 446 isoforms. Bio-Lyte pH 3-5 consists of 84 different M(r) species, in the M(r) range 216-965 Da, for a total of 383 isoforms. Servalyt pH 2-4 is made of 227 different M(r) compounds, in the M(r) interval 204-929 Da, for a total of 1201 isoforms. Pharmalyte pH 2.5-5 comprises 245 amphoteres, in the M(r) range 203-857 Da, for a total of 857 isoforms. Pharmalyte appears to be the best brand, with the vast majority of species focusing sharply at their pI position and almost no 'poor' species, distributed along the entire pH gradient, denoting an extremely shallow pH/mobility curve across the pI value. Due to some overlap with the adjacent acidic pH 4-6 interval, the species in common have been evaluated: the most extended overlaps are found in Ampholine (55% of the species appearing in the two neighbouring intervals) and in Servalyt (47% coincidence). The lowest overlaps are found in Pharmalyte (23%) and in Bio-Lyte (20%).     

Binding of 1,2,4-benzenetricarboxylate by open chain polyammonium cations

The interaction of some open chain polyammonium cations with 1,2,4-benzenetricarboxylate was studied potentiometrically, at 25 degrees C. For all the investigated systems, the species ALHr(r-3) (r = 1,2 ... n + 2; n = number of aminogroups; A = amine; L = carboxylate) are formed. The stability of these complexes depends on charges in the polyammonium cation and in the carboxylic ligand, and for the reaction HiAi+ + HjL(j - 3) = ALHi + j(i + j - 3) we found a mean free energy contribution for salt bridge -delta G0 = 6.5 +/- 0.3 kJ mol-1 n-1 (n = number of possible salt bridges). The results of this investigation are compared with those of similar systems. By considering also the tricarboxylic ligands citrate and 1,2,3-propanetricarboxylate, we found for their complexes with polyammonium cations a fairly close stability. Calculations performed including complexes formed with these two ligands give -delta G0 = 6.6 +/- 0.4 kJ mol-1 n-1.     

THE RELATIVE IMPORTANCE OF VARIOUS ENVIRONMENTAL FACTORS ON THE VERTICAL DISTRIBUTION OF THE AQUATIC PROTOZOAN COLEPS SPIRALIS

Abstract— The vertical distribution of Coleps spiralis in a tertiary lagoon system was observed over a period of 18 months. Water samples were taken from the surface, middle and bottom of the lagoons and examined to determine the number of Coleps present. Various external and internal environmental factors (i.e. light, temperature, wind, etc) were investigated to determine which might be important in influencing the vertical positioning of Coleps in nature. Irradiance factors (both total solar irradiance and the UV-B component (λ= 320–280 nm) of sunlight showed the highest correlation with the location of the animals. When irradiance was high, the animals were usually found near the bottom of the lagoon; when irradiance was low the animals were located more randomly throughout the water column. On the other hand, wind, cloud cover, temperature gradients and bacterial (food) gradients showed low correlation with location of the protozoan in the water.     

Excess around a central molecule with application to binary mixtures

It was shown by us (J. Phys. Chem. B, 2006, 110, 12707) that the excess (deficit) of any species i around a central molecule j in a binary mixture is not provided by c(i)G(ij) (where c(i) is the molar concentration of species i in the mixture and G(ij) are the Kirkwood-Buff integrals) as usually considered and that an additional term, involving a volume V(j) which is inaccessible to molecules of species i because of the presence of the central molecule j, must be included. In this paper, the new expression is applied to various binary mixtures and used to establish a simple criterion for preferential solvation in a binary system. First, it is applied to binary Lennard-Jones fluids. The conventional expression for the excess (deficit) in binary mixtures, c(i)G(ij), provides always deficits around any central molecule in such fluids. In contrast, the new expression provides excess for one species and deficit for the other one. In addition, two kinds of binary mixtures involving weak (argon/krypton) and strong (alcohols/water) intermolecular interactions were considered. Again, the conventional expression for the excess (deficit) in a binary mixture, c(i)G(ij), provides always deficits for any central molecule in the argon/krypton mixture, whereas the new expression provides excess for argon (a somewhat smaller molecule) and deficit for krypton. Three alcohol/water binary mixtures (1-propanol/water, tert-butanol/water and methanol/water) with strong intermolecular interactions were considered and compared with the available experimental information regarding the molecular clustering in solutions. We found (for 1-propanol/water and tert-butanol/water) a large excess of alcohols around a central alcohol molecule and a large excess of water around a central water molecule. For both mixtures the maximum of the calculated excess with respect to the concentration corresponds to the maximum in the cluster size found experimentally, and the range of alcohol concentrations in which the calculated excess becomes very small corresponds to the composition range in which no clusters could be identified experimentally.     

Mass distribution and focusing properties of carrier ampholytes for isoelectric focusing: I. Novel and unexpected results

In an attempt to prepare quasi-isoelectric buffers as BGEs for CE, carrier ampholytes (CAs) (Ampholine, pH 7-9; Servalyt, pH 7-9; Bio-Lyte, pH 8-10 and Pharmalyte, pH 8-10.5) have been subdivided with the Rotofor into 20 fractions, of ca. 0.1 pH unit span, whose composition has been studied by CZE-MS. The results have allowed identifying the number of different molecular mass compounds present in every commercial brand, as well as the number of isoforms (having identical mass, but representing positional isomers) associated with a given M(r) value. Ampholine is composed of 29 species, for a total of 85 different isoforms; Bio-Lyte is made of 43 compounds, for a total of 136 isoforms; Pharmalyte comprises 58 different M(r) chemicals, for a total of 102 isoforms and Servalyt is constituted by 65 species, for a total of 306 compounds (all of these values to be considered as minimum numbers, as detected by the present methodology). Surprisingly, and contrary to theory, a very large proportion (up to 70%) of these species are 'poor carrier ampholytes', in that they are unable to focus and are evenly distributed along the generated pH gradient in the electric field. Paradoxically, the pH gradient is created and sustained by the minority of species (30% for three brands, up to 50% for Pharmalyte) that appear to focus at their pI position into reasonably sharp zones. Even in the narrowest pI fraction, up to 20 different compounds can be detected. It is concluded that very few amines with different useful pK values are utilized for the synthesis and that a new generation of CAs with a more diversified population of amines with proper pK values within the given pH intervals should be sought. Ampholine, the poorest of the commercial brands, appears to be still made with the original synthesis devised by Vesterberg, i.e. by reacting a concoction of oligoamines with alpha,beta-unsaturated acids.     

CALCULATION OF EPR PARAMETERS OF THE LOW-SPIN.d~5 COMPLEXES

<正> Calculation result indicates that the lowest Kramer's doublet of the low-spin d5 complexes proposed by Prof. W. C. Lin and the first order approximate matrix derived by us from the 1.s matrix table of d1 ion and the hole energy level model put forward by Prof. W. C. Lin and Taylor respectively are more suitable to the calculation of EPR parameters of the low-spin d5 complexes. The calculation conditio gzz>gyy>gxx>0 established by Taylor is used by us to obtain two parameters simultaneously, i.e, the orbital reduction factor k of a positive number near to unity, and the rhombi-city λ in range from 0 to 1/3 which is a satisfactory quantitative para meter. The same accurate EPR parameters can be obtained from both this method and Griffith's method.     

Yb(III)-daunomycin interactions. Determination of Nature and number of species by matrix rank analysis

The nature and number of species in Yb(III)-daunomycin solutions have been investigated by graphical and computational methods both of which are based on matrix rank analyses. Determination of the rank of an absorbance matrix, which is the largest non-zero determinant of the matrix, permits the determination of the number of species in solution. The multiple regression analyses performed on the Yb(III)-daunomycin system enabled the determination of the nature of a species that exists at different metal to ligand ratios: ML₂ at ratios less than 1.5, M₂L at ratios greater than 15, and probably predominantly ML in between the two ratios. The matrix rank analyses approach is suited, it was found, to bracket the range of concentration ratios where a particular species predominates. While this is true by and large, it appears that the adequacy of the methods depends on the degree of complexity of the system.     

Binding of polyanions by biogenic amines. II. Formation and stability of protonated putrescine and cadaverine complexes with carboxylic ligands

The formation and stability of protonated diamines-carboxylic ligand complexes was studied potentiometrically (H(+)-glass electrode). Species formed are ALH(r) (A=cadaverine, putrescine, L=acetate, malate, tartrate, malonate, citrate, 1,2,3-propanetricarboxylate, 1,2,3,4-butanetetracarboxylate and glutamate; r=1...m+1, where m is the maximum degree of protonation of the carboxylic ligand), and their stability is a function of charges involved in the formation reaction. For the equilibrium H(i)A(i+)+H(j)L((j-z))=ALH((i+j-z))(i+j) the following linear relationships can be written: logK(1j)=-0.25+0.75 |j-z|, logK(2j)=0.50+0.90 |j-z| (by also considering some ethylenediamine and 1,2-diaminopropane complexes). Medium effects were considered. Comparison was made with analogous inorganic polyanion complexes. The simplest relationships -DeltaG(0)=6.5+/-0.3 and -DeltaG(0)=7.9+/-0.6 kJ mol(-1)n(-1) (n=number of possible salt bridges) were found for carboxylic and inorganic anions, respectively.     

On walks in molecular graphs.

Walks in molecular graphs and their counts for a long time have found applications in theoretical chemistry. These are based on the fact that the (i, j)-entry of the kth power of the adjacency matrix is equal to the number of walks starting at vertex i, ending at vertex j, and having length k. In recent papers (refs 13, 18, 19) the numbers of all walks of length k, called molecular walk counts, mwc(k), and their sum from k = 1 to k = n - 1, called total walk count, twc, were proposed as quantities suitable for QSPR studies and capable of measuring the complexity of organic molecules. We now establish a few general properties of mwc's and twc among which are the linear dependence between the mwc's and linear correlations between the mwc's and twc, the spectral decomposition of mwc's, and various connections between the walk counts and the eigenvalues and eigenvectors of the molecular graph. We also characterize the graphs possessing minimal and maximal walk counts.     

蛋白质分子的HNP格点模型

从 6 0种球形蛋白质的结构出发 ,采用Miyazawa Jernigan相互作用矩阵 ,计算了蛋白质分子中氨基酸之间的相互作用能 .发现构成蛋白质分子的 2 0种氨基酸可分成疏水 (Hydrophobic ,H)、中性 (Neutral,N)、亲水(Hydrophilic ,P)基团 .在计算它们之间相互作用能的基础上 ,建立了蛋白质分子的HNP格点模型 .用这个模型计算了二维蛋白质分子在自然态 (Nativestate)时的构象性质 .同时研究了氨基酸序列为HHNHNPNHPP HPNPPHPHPPHHPHNH的折叠过程 ,得到其基态能量为 - 6 4 89RT .这能为研究球形蛋白质的构象性质及折叠过程提供一种更合理的格点模型     

ROLE OF Ga AND Pt-Ga IN THE CONVERSION OF PROPANE OVER Ga/HZSM-5 AND Pt-Ga/HZSM-5

为获得较高的Ｃ２选择性，在加水（水蒸气）条件下，研究了添加ＣａＯ对甲烷氧化偶联Ｌａ２Ｏ３催化剂的影响。发现ＣａＯ的添加提高了Ｌａ２Ｏ３催化剂的活性，同时水的添加明显地提高了催化剂的Ｃ２选择性。在加水条件下，Ｌａ２Ｏ３－ＣａＯ催化剂获得了较好的结果，其ＣＨ４转换率为２０％，Ｃ２选择性超过８０％。利用ＸＲＤ和ＸＰＳ技术对催化剂进行了表征，并对加水和不加水条件下的催化剂性能与结构变化的关系进行了讨论     

剪切作用下纳米粘土对LDPE熔体粘弹响应的影响

以LDPE/EVA/纳米粘土复合体系为研究模型,考察了剪切作用下,分散良好的纳米粘土对聚合物基体熔体稳态及瞬态粘弹响应的影响.发现剪切作用下,纳米粘土增加了聚合物熔体粘弹特性对剪切速率、剪切应变及剪切作用史的依赖性,改变了相应的依赖关系.稳态剪切时,纳米粘土的加入使体系第一法向应力差(N1)在低剪切速率区变为负值,而在高剪切速率区N1与粘土的含量无关;同时就瞬态剪切应力及N1的应变依赖关系而言,复合体系明显不同于聚合物基体;预剪切对聚合物基体瞬态粘弹响应几乎没有影响,而当纳米粘土的加入量大于3wt%后,与未经预剪切的样品相比较,经预剪切的复合体系的瞬态剪切应力值、应力过冲程度以及稳态剪切应力值均明显下降,且预剪切前后复合体系达到稳态时其瞬态剪切应力差值随纳米粘土含量的增高而线性增加.此外,纳米粘土的添加对聚合物熔体受剪切作用的非线性粘弹响应存在影响.复合体系熔体呈现特异非线性粘弹响应,其缘由被认为是由于纳米粘土在聚合物基体中剥离分散,或聚合物分子链插层于粘土片层间,形成局部有序结构,受剪切作用而排列取向.     

TIME-RESOLVED RESONANCE RAMAN SPECTROSCOPY OF THE BACTERIORHODOPSIN PHOTOCYCLE ON THE PICOSECOND AND NANOSECOND TIME SCALES

Abstract— Resonance Raman spectra of the picosecond bacteriorhodopsin intermediate(s) have been obtained by microbeam, flow and subtraction techniques using a synchronously pumped, cavity-dumped dye laser. Nanosecond spectra also were measured with this laser by cavity dumping without mode-locking. The picosecond spectra in the fingerprint region, which is sensitive to the configuration of the retinal chromophore, differ from spectra of the parent bR₅₇₀ but could be correlated to the spectrum of bR^DA₅₅₀ , a “13-cis” species which has been determined from spectra of bR₅₇₀ and bR^DA₅₆₀. The picosecond transient and bR^DA₅₅₀ also are similar in the 950–1050 cm^-1“deuteration fingerprint” region when the medium is changed from H₂O to D₂O. These results suggest that trans—cis isomerization occurs during the 40-ps pulse duration. The shift relative to the parent bR₅₇₀ in the ethylenic stretch region suggests that the picosecond and nanosecond transients absorb at wavelengths longer than 570 nm. The C band at 1646 cm^-1 is found to shift or to broaden upon photolysis in the picosecond time scale. This might suggest a change in the electronic structure of the group and its environment on the picosecond time domain. The nanosecond spectra obtained in this work (with 15-ns pulses) are similar to the spectra previously observed on the 100-ns time scale but are slightly different from the picosecond spectrum. These data suggest that more than one transient species appears on the picosecond-to-nanosecond time scale. The temporal evolution of Raman bands in the fingerprint as well as the low energy (950–1050 cm^-1) region and its implications are discussed.     

Atomic walk counts of negative order

Atomic walk counts (awc's) of order k (k > or = 1) are the number of all possible walks of length k which start at a specified vertex (atom) i and end at any vertex j separated by m (0 < or = m < or = k) edges from vertex i. The sum of atomic walk counts of order k is the molecular walk count (mwc) of order k. The concept of atomic and molecular walk counts was extended to zero and negative orders by using a backward algorithm based on the usual procedure used to obtain the values of mwc's. The procedure can also be used in cases in which the adjacency matrix A related to the actual structure is singular and therefore A(-1) does not exist. awc's and mwc's of negative order may assume noninteger and even negative values. If matrix A is singular, atomic walk counts of zero order may not be equal to one.