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1.
The microbial transfer of electrons to extracellularly located solid compounds, termed extracellular electron transport (EET), is critical for microbial electrode catalysis. Although the components of the EET pathway in the outer membrane (OM) have been identified, the role of electron/cation coupling in EET kinetics is poorly understood. We studied the dynamics of proton transport associated with EET in an OM flavocytochrome complex in Shewanella oneidensis MR‐1. Using a whole‐cell electrochemical assay, a significant kinetic isotope effect (KIE) was observed following the addition of deuterated water (D2O). The removal of a flavin cofactor or key components of the OM flavocytochrome complex significantly increased the KIE in the presence of D2O to values that were significantly larger than those reported for proton channels and ATP synthase, thus indicating that proton transport by OM flavocytochrome complexes limits the rate of EET.  相似文献   

2.
3.
The effects of charged species on proton‐coupled electron‐transfer (PCET) reaction should be of significance for understanding/application of important chemical and biological PCET systems. Such species can be found in proximity of activated complex in a PCET reaction, although they are not involved in the charge transfer process. Reported here is the first study of the above‐mentioned effects. Here, the effects of Na+, K+, Li+, Ca2+, Mg2+, and Me4N+ observed in PCET reaction of ascorbate monoanions with hexacyanoferrate(III) ions in H2O reveal that, in presence of ions, this over‐the‐barrier reaction entered into tunneling regime. The observations are: a) dependence of the rate constant on the cation concentration, where the rate constant is 71 (at I = 0.0023), and 821 (at 0.5M K+), 847 (at 1.0M Na+), and 438 M ?1 s?1 (at 0.011M Ca2+); b) changes of kinetic isotope effect (KIE) in the presence of ions, where kH/kD=4.6 (at I = 0.0023), and 3.4 (in the presence of 0.5M K+), 3.3 (at 1.0M Na+), 3.9 (at 0.001M Ca2+), and 3.9 (at 0.001M Mg2+), respectively; c) the isotope effects on Arrhenius pre‐factor where AH/AD=0.97 (0.15) in absence of ions, and 2.29 (0.60) (at 0.5M Na+), 1.77 (0.29) (at 1.0M Na+), 1.61 (0.25) (at 0.5M K+), 0.42 (0.16) (at 0.001M Ca2+) and 0.16 (0.19) (at 0.001M Mg2+); d) isotope differences in the enthalpies of activation in H2O and in D2O, where ΔΔH?(D,H)=3.9 (0.4) kJ mol?1 in the absence of cations, 1.3 (0.6) at 0.5M Na+, 1.8 (0.4) at 0.5M K+, 1.5 (0.4) at 1.0M Na+, 5.5 (0.9) (at 0.001M Ca2+), and 7.9 (2.8) (at 0.001M Mg2+) kJ mol?1; e) nonlinear proton inventory in reaction. In the H2O/dioxane 1 : 1, the observed KIE is 7.8 and 4.4 in the absence and in the presence of 0.1M K+, respectively, and AH/AD=0.14 (0.03). The changes when cations are present in the reaction are explained in terms of termolecular encounter complex consisting of redox partners, and the cation where the cation can be found in a near proximity of the reaction‐activated complex thus influencing the proton/electron double tunneling event in the PCET process. A molecule of H2O is involved in the transition state. The resulting ‘configuration’ is more ‘rigid’ and more appropriate for efficient tunneling with Na+ or K+ (extensive tunneling observed), i.e., there is more precise organized H transfer coordinate than in the case of Ca2+ and Mg2+ (moderate tunneling observed) in the reaction.  相似文献   

4.
Soluble methane monooxygenase (sMMO) is an enzyme that converts alkanes to alcohols using a di(μ‐oxo)diiron(IV) intermediate Q at the active site. Very large kinetic isotope effects (KIEs) indicative of significant tunneling are observed for the hydrogen transfer (H‐transfer) of CH4 and CH3CN; however, a relatively small KIE is observed for CH3NO2. The detailed mechanism of the enzymatic H‐transfer responsible for the diverse range of KIEs is not yet fully understood. In this study, variational transition‐state theory including the multidimensional tunneling approximation is used to calculate rate constants to predict KIEs based on the quantum‐mechanically generated intrinsic reaction coordinates of the H‐transfer by the di(μ‐oxo)diiron(IV) complex. The results of our study reveal that the role of the di(μ‐oxo)diiron(IV) core and the H‐transfer mechanism are dependent on the substrate. For CH4, substrate binding induces an electron transfer from the oxygen to one FeIV center, which in turn makes the μ‐O ligand more electrophilic and assists the H‐transfer by abstracting an electron from the C?H σ orbital. For CH3CN, the reduction of FeIV to FeIII occurs gradually with substrate binding and H‐transfer. The charge density and electrophilicity of the μ‐O ligand hardly change upon substrate binding; however, for CH3NO2, there seems to be no electron movement from μ‐O to FeIV during the H‐transfer. Thus, the μ‐O ligand appears to abstract a proton without an electron from the C?H σ orbital. The calculated KIEs for CH4, CH3CN, and CH3NO2 are 24.4, 49.0, and 8.27, respectively, at 293 K, in remarkably good agreement with the experimental values. This study reveals that diverse KIE values originate mainly from tunneling to the same di(μ‐oxo)diiron(IV) core for all substrates, and demonstrate that the reaction dynamics are essential for reproducing experimental results and understanding the role of the diiron core for methane oxidation in sMMO.  相似文献   

5.
The pharmacokinetics of pharmaceutical drugs can be improved by replacing C−H bonds with the more stable C−D bonds at the α-position to heteroatoms, which is a typical metabolic site for cytochrome P450 enzymes. However, the application of deuterated synthons is limited. Herein, we established a novel concept for preparing deuterated reagents for the successful synthesis of complex drug skeletons with deuterium atoms at the α-position to heteroatoms. (dn-Alkyl)diphenylsulfonium salts prepared from the corresponding nondeuterated forms using inexpensive and abundant D2O as the deuterium source with a base, were used as electrophilic alkylating reagents. Additionally, these deuterated sulfonium salts were efficiently transformed into dn-alkyl halides and a dn-alkyl azide as coupling reagents and a dn-alkyl amine as a nucleophile. Furthermore, liver microsomal metabolism studies revealed deuterium kinetic isotope effects (KIE) in 7-(d2-ethoxy)flavone. The present concept for the synthesis of deuterated reagents and the first demonstration of a KIE in a d2-ethoxy group will contribute to drug discovery research based on deuterium chemistry.  相似文献   

6.
The purpose of the study was to determine the distribution of the photosensitizer toluidine blue O (TBO) within Porphyromonas gingivalis and the possible mechanism(s) involved in the lethal photosensitization of this organism. The distribution of TBO was determined by incubating P. gingivalis with tritiated TBO (3H-TBO) and fractionating the cells into outer membrane (OM), plasma membrane (PM), cytoplasmic proteins, other cytoplasmic constituents and DNA. The percentage of TBO in each of the fractions was found to be, 86.7, 5.4, 1.9, 5.7 and 0.3%, respectively. The involvement of cytotoxic species in the lethal photosensitization induced by light from a helium-neon (HeNe) laser and TBO was investigated by using deuterium oxide (D2O), which prolongs the lifetime of singlet oxygen, and the free radical and singlet oxygen scavenger L-tryptophan. There were 9.0 log10 and 2 log10 reductions in the presence of D2O and H2O (saline solutions), respectively, at a light dose of 0.44 J (energy density = 0.22 J/cm2), suggesting the involvement of singlet oxygen. Decreased kills were attained in the presence of increasing concentrations of L-tryptophan. The effect of lethal photosensitization on whole cell proteins was determined by measuring tryptophan fluorescence, which decreased by 30% using 4.3 J (energy density = 4.3 J/ cm2) of light. Effects on the OM and PM proteins were determined by sodium dodecyl sulfate polyacrylamide gel electrophoresis. There was evidence of change in the molecular masses of several PM proteins and OM proteins compared to controls. There was evidence of damage to the DNA obtained from irradiated cells. Scanning electron microscopic studies showed that there was coaggre-gation of P. gingivalis cells when sensitized and then exposed to laser light. These results suggest that lethal photosensitization of P. gingivalis may involve changes in OM and/or PM proteins and DNA damage mediated by singlet oxygen.  相似文献   

7.
Recently, it was shown that μ‐oxo‐μ‐peroxodiiron(III) is converted to high‐spin μ‐oxodioxodiiron(IV) through O?O bond scission. Herein, the formation and high reactivity of the anti‐dioxo form of high‐spin μ‐oxodioxodiiron(IV) as the active oxidant are demonstrated on the basis of resonance Raman and electronic‐absorption spectral changes, detailed kinetic studies, DFT calculations, activation parameters, kinetic isotope effects (KIE), and catalytic oxidation of alkanes. Decay of μ‐oxodioxodiiron(IV) was greatly accelerated on addition of substrate. The reactivity order of substrates is toluene<ethylbenzene≈cumene<trans‐β‐methylstyrene. The rate constants increased proportionally to the substrate concentration at low substrate concentration. At high substrate concentration, however, the rate constants converge to the same value regardless of the kind of substrate. This is explained by a two‐step mechanism in which anti‐μ‐oxodioxodiiron(IV) is formed by syn‐to‐anti transformation of the syn‐dioxo form and reacts with substrates as the oxidant. The anti‐dioxo form is 620 times more reactive in the C?H bond cleavage of ethylbenzene than the most reactive diiron system reported so far. The KIE for the reaction with toluene/[D8]toluene is 95 at ?30 °C, which the largest in diiron systems reported so far. The present diiron complex efficiently catalyzes the oxidation of various alkanes with H2O2.  相似文献   

8.
Hydroxylation of mesitylene by a nonheme manganese(IV)–oxo complex, [(N4Py)MnIV(O)]2+ ( 1 ), proceeds via one‐step hydrogen‐atom transfer (HAT) with a large deuterium kinetic isotope effect (KIE) of 3.2(3) at 293 K. In contrast, the same reaction with a triflic acid‐bound manganese(IV)‐oxo complex, [(N4Py)MnIV(O)]2+‐(HOTf)2 ( 2 ), proceeds via electron transfer (ET) with no KIE at 293 K. Interestingly, when the reaction temperature is lowered to less than 263 K in the reaction of 2 , however, the mechanism changes again from ET to HAT with a large KIE of 2.9(3). Such a switchover of the reaction mechanism from ET to HAT is shown to occur by changing only temperature in the boundary region between ET and HAT pathways when the driving force of ET from toluene derivatives to 2 is around ?0.5 eV. The present results provide a valuable and general guide to predict a switchover of the reaction mechanism from ET to the others, including HAT.  相似文献   

9.
The UV‐dissipative mechanisms of the eumelanin building block 5,6‐dihydroxyindole‐2‐carboxylic acid (DHICA) and the 4,7‐dideutero derivative (DHICA‐d2) in buffered H2O or D2O have been characterized by using ultrafast time‐resolved fluorescence spectroscopy. Excitation of the carboxylate anion form, the dominating state at neutral pH, leads to dual fluorescence. The band peaking at λ=378 nm is caused by emission from the excited initial geometry. The second band around λ=450 nm is owed to a complex formed between the mono‐anion and specific buffer components. In the absence of complex formation, the mono‐anion solely decays non‐radiatively or by emission with a lifetime of about 2.1 ns. Excitation of the neutral carboxylic acid state, which dominates at acidic pH, leads to a weak emission around λ=427 nm with a short lifetime of 240 ps. This emission originates from the zwitterionic state, formed upon excitation of the neutral state by sub‐ps excited‐state intramolecular proton transfer (ESIPT) between the carboxylic acid group and the indole nitrogen. Future studies will unravel whether this also occurs in larger building blocks and ESIPT is a built‐in photoprotective mechanism in epidermal eumelanin.  相似文献   

10.
Electrical conduction of the oxide BaZr0.9Y0.1O3 − δ is studied by electrochemical impedance spectroscopy as a function of temperature (300–600°C) and the oxygen partial pressure in gas phase saturated with H2O or D2O vapor. The full electrical conduction is separated into components, in particular, the bulk and grain boundary conduction. It is shown that at P O2> 1 Pa the BaZr0.9Y0.1O3 − δ conduction is contributed significantly by electron holes whose transference number in air atmosphere may be as high as 0.5–0.6. In reductive conditions, the electrical transfer involves proton (deuteron) charge carriers. Isotopic effect H/D in the conduction in the bulk and along the grain boundaries is determined. Isotopic effect H/D in the hole conduction is also revealed. It is shown that this effect comes out of different solubility of deuterons and protons in the oxide (the thermodynamic isotopic effect).  相似文献   

11.
为了改善基于SnO2电子传输层的钙钛矿太阳能电池的界面电荷传输特性和迟滞现象,我们采用低温溶液处理工艺制备了4种不同类型的SnO2电子传输层用于钙钛矿太阳能电池,包括由SnCl4·5H2O溶胶-凝胶层(Cl4-SnO2)、SnCl2·2H2O溶胶-凝胶层(Cl2-SnO2)和SnO2纳米颗粒层(NP-SnO2)与SnO2胶体层(Col-SnO2)两两相互作用形成的同质结SnO2双层电子传输层和Col-SnO2单层电子传输层;并系统研究了不同SnO2双层电子传输层对器件光电性能和迟滞现象的影响。通过扫描电镜(SEM)、X射线衍射(XRD)、稳态光致发光(PL)、电化学阻抗(EIS)和稳定性测试等表征证实,在Col-SnO...  相似文献   

12.
Laboratory-made asymmetric polyurethane membranes designed for immunoisolation were investigated. Two types of EK and ES membranes were prepared in different spinning conditions. The membrane structure was characterised by the skin pore radius measurements using differential scanning calorimetry (DSC). Diffusive transport properties of membranes were determined by in vitro method for albumin and creatinine. The scanning electron microscopy (SEM) was applied to study the morphology of membranes. It has been found that the DSC technique is a useful tool for the evaluation of pore radii in the skin layer for PU membranes. Calculated pore radii were in the range from 1.95 to 2.47 nm for the EK and ES types. A correlation between the skin pore radii and the transport properties was not found in this case of investigated membranes. However, the transport properties data can serve for the estimation of selectivity of membranes. Thus, the selectivity of membranes for solutes of various molecular size was estimated from the D m/D w ratio of diffusion coefficients for albumin and creatinine. The SEM micrographs reveal the finger-like internal structure of capillary membranes, as well as various skin thickness. This revised version was published online in July 2006 with corrections to the Cover Date.  相似文献   

13.
Graphite electrodes modified with redox‐polymer‐entrapped yeast cells were investigated with respect to possible electron‐transfer pathways between cytosolic redox enzymes and the electrode surface. Either wild‐type or genetically modified Hansenula polymorpha yeast cells over‐expressing flavocytochrome b2 (FC b2) were integrated into Os‐complex modified electrodeposition polymers. Upon increasing the L ‐lactate concentration, an increase in the current was only detected in the case of the genetically modified cells. The overexpression of FC b2 and the related amplification of the FC b2/L ‐lactate reaction cycle was found to be necessary to provide sufficient charge to the electron‐exchange network in order to facilitate sufficient electrochemical coupling between the cells, via the redox polymer, to the electrode. The close contact of the Os‐complex modified polymer to the cell wall appeared to be a prerequisite for electrically wiring the cytosolic FC b2/L ‐lactate redox activity and suggests the critical involvement of a plasma membrane redox system. Insights in the functioning of whole‐cell‐based bioelectrochemical systems have to be considered for the successful design of whole‐cell biosensors or microbial biofuel cells.  相似文献   

14.
The kinetic isotope effect (KIE) is key to understanding reaction mechanisms in many areas of chemistry and chemical biology, including organometallic chemistry. This ratio of rate constants, kH/kD, typically falls between 1–7. However, KIEs up to 105 have been reported, and can even be so large that reactivity with deuterium is unobserved. We collect here examples of large KIEs across organometallic chemistry, in catalytic and stoichiometric reactions, along with their mechanistic interpretations. Large KIEs occur in proton transfer reactions such as protonation of organometallic complexes and clusters, protonolysis of metal–carbon bonds, and dihydrogen reactivity. C−H activation reactions with large KIEs occur with late and early transition metals, photogenerated intermediates, and abstraction by metal-oxo complexes. We categorize the mechanistic interpretations of large KIEs into the following three types: (a) proton tunneling, (b) compound effects from multiple steps, and (c) semi-classical effects on a single step. This comprehensive collection of large KIEs in organometallics provides context for future mechanistic interpretation.  相似文献   

15.
Densities and viscosities of binary mixtures (H2O or D2O) (1) + (DMSO or DMSO-D6)(2) have been measured over the entire mole fraction range; and the excess volumes, excess viscosities, and excess partial molar volumes Vf of the components have been obtained. All systems show negative excess volume Ve at all compositions, values for mixtures containing D2O being more negative than those with H2O byca. 0.03 cm3-mol-1 at x1, = 0.6, where a minimum is observed. The difference between DMSO and DMSO-D6 containing mixtures is negligible. The excess viscosity ηe is always positive and shows a maximum at x1 = 0.65; at this composition, the substitution of H2O with D2O causes an excess viscosity increment ofca. 0.35 mPa-s, while deuteration of DMSO brings about a smaller increase,ca. 0.1 mPa-s. The trend of V 2 E with concentration shows the characteristic features of moderately hydrophobic solutes in water (negative values and a minimum in the water-rich region), features that are slightly but significantly more marked in D2O than in H2O. The V 2 E values in the water-diluted region and at x1, =0 are more negative for D2O than for H2O.  相似文献   

16.
The oxidation of primary alcohols by sodium N-chloroethylcarbamate in acid solution, results in the formation of corresponding aldehydes. The reaction is first order with respect to the oxidant and alcohol. The rate increases with an increase in acidity. The oxidation of α,α-dideuterioethanol exhibited a primary kinetic isotope, kH/kD = 2.11 at 298 K. The value of solvent isotope effect k(H2O)/k(D2O) = 2.23 at 298 K. Addition of ethyl carbamate does not affect the rate. (EtOC(OH)NHCl)+ has been postulated as the reactive species. Plots of (log k2 + Ho) against (Ho + log[H+]) are linear with the slope, ?, having values from 1.78–1.87. This suggested a proton abstraction by water in the rate-determining step. The rates of oxidation of alcohols bearing both electron-withdrawing and electron-donating groups are more than that of methanol. A concerted mechanism involving transfer of a hydride ion from the C? H bond of the alcohol tothe oxidant and removal of a proton from the O? H group by a water molecule has been proposed.  相似文献   

17.
Neutral hydroxymethylene HCOH is an important intermediate in several chemical reactions; however, it is difficult to observe due to its high reactivity. In this work, neutral hydroxymethylene and formaldehyde were generated by charge exchange neutralization of their respective ionic counterparts and then were reionized and detected as positive‐ion recovery signals in neutralization–reionization mass spectrometry in a magnetic sector instrument of BEE geometry. The reionized species were characterized by their subsequent collision‐induced dissociation mass spectra. The transient hydroxymethylene neutral was observed to isomerize to formaldehyde with an experimental time span exceeding 13.9 µs. The vertical neutralization energy of the HCOH+? ion has also been assayed using charge transfer reactions between the fast ions and stationary target gases of differing ionization energy. The measured values match the result of ab initio calculations at the QCISD/6‐311 + G(d,p) and CCSD(T)/6‐311 + + G(3df,2p) levels of theory. Neutral hydroxymethylene was also produced by proton transfer from CH2OH+ to a strong base such as pyridine, confirmed by appropriate isotopic labeling. There is a kinetic isotope effect (KIE) for H+ versus D+ transfer from the C atom of the hydroxymethyl cation of ~3, consistent with a primary KIE of a nearly thermoneutral reaction. Copyright © 2011 John Wiley & Sons, Ltd.  相似文献   

18.
We report the electron‐transport behaviors of a number of molecular junctions composed of π‐conjugated molecular wires. From calculations performed by using density functional theory (DFT) combined with the non‐equilibrium Green’s function (NEGF) method, we found that the length–conductivity relations are diverse, depending on the particular molecular structures. The results reveal that the conductance–length dependence follows an exponential law for many conjugated molecules with a single channel, such as oligothiophene, oligopyrrole and oligophenylene. Therefore, a quantitative relation between the energy gap (Eg) of the molecular wire and the attenuation factor β can be defined. However, when the molecular wires have multichannels, the decay of conductance does not follow the exponential relation. For example, the conductance of porphyrin‐based oligomers and fused thiophene decays almost linearly. The diversity of electron‐transport behaviors of molecular junctions is directly dominated by the electron‐transport pathway.  相似文献   

19.
The densities of dilute solutions of H2O and D2O in 1,4-dioxane and tert-BuOD have been measured in the interval 288.15–318.15 K with an error of 2·10–6 g/cm3. The limiting partial molar volumes of D2O and H2O in 1,4-dioxane andtert-butanol have been determined by using an original procedure; the changes in the partial molar volume of water due to H-D substitution in the water molecules have been calculated. The analysis of the temperature dependence of the partial volumes of the components of the binary mixtures H2O (D2O) + 1,4-dioxane and H2O (D2O) +tert-BuOH (tert-BuOD) showed on the basis of Maxwell's crossing equations that the addition of small amounts of water significantly alters the structure of the unary organic solvent. In the presence of trace amounts of water the expansibility of 1,4-dioxane increases and that oftert-butanol decreases.For previous communication, see [1].Institute of the Chemistry of Nonaqueous Solutions, Russian Academy of Sciences, Ivanovo 153018. Translated from Izvestiya Akademii Nauk, Seriya Khimicheskaya, No. 3, pp. 568–571, March, 1992.  相似文献   

20.
The hydrogen bonding interactions between cysteine (Cys) and formaldehyde (FA) were studied with density functional theory regarding their geometries, energies, vibrational frequencies, and topological features of the electron density. The quantum theory of atoms in molecules and natural bond orbital analyses were employed to elucidate the interaction characteristics in the Cys‐FA complexes. The intramolecular hydrogen bonds (H‐bonds) formed between the hydroxyl and the N atom of cysteine moiety in some Cys‐FA complexes were strengthened because of the cooperativity. Most of intermolecular H‐bonds involve the O atom of cysteine/FA moiety as proton acceptors, while the strongest H‐bond involves the O atom of FA moiety as proton acceptor, which indicates that FA would rather accept proton than providing one. The H‐bonds formed between the CH group of FA and the S atom of cysteine in some complexes are so weak that no hydrogen bonding interactions exist among them. In most of complexes, the orbital interaction of H‐bond is predominant during the formation of complex. The electron density (ρb) and its Laplace (?2ρb) at the bond critical point significantly correlate with the H‐bond parameter δR, while a linearly relationship between the second‐perturbation energy E(2) and ρb has been found as well. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012  相似文献   

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