Synthesis and fluorescence ion-sensory properties of the first dehydropyridoannulene-type cyclophane with enforced exotopic metal ion binding sites

The new twistophane 4 has been synthesised, which comprises a conjugated dehydropyridoannulene-type macrocyclic scaffold with outwardly projecting nitrogen-donor sites for the purpose of metal ion coordination. The macrocyclíc structure of 4 was assigned by using spectroscopic methods, and shown to exist in a twisted and chiral ground state conformation by semi-empirical theoretical calculations. A detailed spectroscopic investigation into the metal ion binding properties of 4 and precursor 11 revealed that they functioned as selective complexants, affording a fluorescence quenching output response characteristic of Pd(II) and Hg(II) ions. Furthermore, 4 also signalled the presence of Fe(II), Co(II), Ni(II) and Ag(I) ions by the precipitation of coordination polymers, and exhibited reversible proton-triggered fluorescence quenching behaviour. Macrocycle 4 thus represents a unique type of molecular sensory platform, which may find a wealth of potential applications such as the detection of heavy-metal pollutants, as well as for the fabrication of proton-switchable materials and coordination polymers with novel electronic and magnetic properties.     

A new bicyclic dipeptide isostere with pyrrolizidinone skeleton

The synthesis of a new conformationally constrained Gly-(s-cis)Pro Turn Mimetic (GPTM) in both racemic and enantiomerically pure forms and their incorporation into peptides 18, 21, and 24 are reported. The synthetic strategy adopted to assemble the bicyclic pyrrolizidinone skeleton is based on the 1,3-dipolar cycloaddition of the cyclic nitrone 4a derived from proline and acrylamide, followed by a reductive cleavage/cyclization domino process. The enantiomerically pure GPTMs are obtained by synthesis and separation of diastereomeric intermediates containing (1R)-1-phenylethylamine as chiral auxiliary. Analysis of pseudotripeptides 18, 21, and 22 by FT-IR and NMR shows that the amide proton of GPTM derivatives 21 is intramolecularly hydrogen bonded in CDCl(3), while DMSO was shown to disrupt this hydrogen bond.     

Synthesis of an annularly linked bicyclic chiral cyclophane by pre-organization of a dibromide

An annularly linked bicyclic chiral cyclophane was synthesized from a suitable pre-organized chiral dibromide.     

A new bicyclic proline-mimetic amino acid

A new constrained bicyclic α-amino acid proline-mimetic was developed. The synthesis was achieved starting from derivatives of the chiral pool, thus allowing to prepare analogues of either l- or d-proline by choosing appropriate stereoisomers of serine and α,β-isopropylidene-glycerol derivatives. The scaffolds were prepared as N-Fmoc-amino acid suitable for solid-phase peptide synthesis.     

Molecular association of benzene with a new cyclophane receptor

Host/guest interactions in the cyclophane-2/benzene system have been investigated by absorption and fluorescence spectroscopy in dichloromethane. The cyclophane serves as a host and the benzene as a guest. Absorption and fluorescence titration experiments are carried out by holding either the concentration of the host or guest constant while varying the concentration of the other component. When the concentration of benzene is kept constant, an isostilbic point at 288 nm is observed in the fluorescence spectral data, suggesting that only two absorbing species are present in equilibrium. Keeping the concentration of cyclophane-2 constant while increasing the concentration of benzene results in a hyposchromic shift of the emission peaks in the range 275–360 nm. The shift is attributed to interaction of the cyclophane with benzene. The average association constant of cyclophane-2 with benzene, K _a = 425 ± 54 M^?1, obtains from fitting the absorption and the fluorescence spectral data to the Bourson et al. equation using non-linear regression analysis.     

Surface plasmon resonance study on binding interactions of multivalent cyclophane hosts with immobilized guests

Guest‐binding affinities of water‐soluble cyclophane heptadecamer (1) and pentamer (2) with immobilized guests such as 1‐pyrenylmethylamine (PMA) and 2‐(1‐ naphthyl)ethylamine (NEA) were investigated by surface plasmon resonance (SPR) measurements. As a typical example, the binding constants (K) for 1 and 2 with the immobilized PMA as a guest were evaluated to be 2.5 × 10⁷ and 2.7 × 10⁶ M^?1, respectively, and were much larger than that of a monocyclic reference cyclophane (K, 2.5 × 10⁴ M^?1). Interestingly, in the complexation of 1 and 2 with the immobilized guests, more favorable association and dissociation rate constant values (k_a and k_d, respectively) were observed in comparison with those for the monocyclic cyclophane, reflecting multivalent effects in macrocycles. The multivalent effects in macrocycles as well as molecular recognition abilities of the cyclophane oligomers were confirmed even when the guest molecules were immobilized on SPR sensor chip surfaces. Copyright © 2009 John Wiley & Sons, Ltd.     

Synthesis and solid-state structures of new cyclophane host molecules

Five new cyclophane host molecules (corrals) are prepared by linking together two α,α′-di(4-hydroxyphenyl)-1,4-diisopropylbenzene or α,α′-di(3,5-dimethyl-4-hydroxyphenyl)-1,4-diisopropylbenzene units with two permethylene spacers. Three small cyclophane hosts (boxes) are synthesized by cyclization of α,α′-di(4-hydroxyphenyl)-1,4-diisopropylbenzene with di(bromomethyl)benzene compounds. Solid-state structures of one corral and one box are reported.     

A new method for the synthesis of bicyclic pyran acetals

cis‐Fused bicyclic acetals were obtained from the unusual cyclization reaction between diols and dihydropyran. Furothiopyran, substituted pyranopyrans, and pyranooxepine and pyranobenzoxepine compounds were obtained with high diastereoselectivity and cis‐diastereomers were obtained in high yields.     

A new and facile route from a thiaphane to a cyclophane via iron pentacarbonyl

2,11-Dithia[3,3]paracyclophane is converted into [2.2]-paracyclophane in 62% yield by treatment with Fe(CO)₅ in refluxing toluene.     

Phage selection of bicyclic peptides binding Her2

Aberrant expression of the epidermal growth factor receptor Her2 has been implicated in various malignancies including breast cancer. Monoclonal antibodies and an antibody–drug conjugate targeting Her2 have found wide clinical application. Herein, we aimed at developing Her2-specifc ligands based on peptides that have a 100-fold smaller molecular weight than antibodies. Such peptides could potentially offer advantages in the development of ligand–drug conjugates, such as ease of synthesis and conjugation, higher molecule-per-mass ratios, and better tumor penetration. Panning of large bicyclic peptide phage display libraries against Her2 yielded a range of Her2-specific ligands having different formats and binding motifs. Strong sequence similarities among several of the isolated peptides indicated that they interact with Her2 in a specific manner. The best bicyclic peptide obtained after affinity maturation bound Her2 with a K_D of 304 nM. The diverse peptide ligands may offer valuable starting points for the development of high-affinity Her2 binders with potential application for tumor imaging and therapy.     

New macrocyclic polyethers with remote binding sites

The synthesis and binding properties of new macrocyclic polyethers are described. These systems incorporate 2,2′-bipyridyl functions in such a fashion that binding of metal nuclei can occur at either the macro-cycle or the bipyridyl function. Evidence is presented that binding of alkali metals occurs at the crown ether cavity while binding of transition metals occurs at the bipyridyl function. Simultaneous binding of two different metals is interpreted in terms of electronic and allosteric effects.     

Design and synthesis of a new class of hydrophobic binding sites

The design, synthesis and basic aggregation and binding behavior of a new class of water-soluble molecules with hydrophobic binding sites are reported.     

Synthesis of some new bicyclic pyrazoline derivatives

2,6-Diarylidenecyclohexanones react with hydrazine to give the corresponding bicyclic pyrazolines. The synthesis of a series of twenty eight substituted pyrazolines is described. The structure of all products was confirmed by microanalyses, ir and nmr data.     

Diarylcyclohexanones: synthons for new bicyclic compounds

Abstract  

We used 4-acetyl-3,5-diarylcyclohexanones bearing two different aromatic rings as synthons for the preparation of 6,7-diaryl-4-(dialkylamino)bicyclo[2.2.2]octanones, starting materials for new antiprotozoals.     

Getting new monomers: Carboxyl bicyclic methacrylates

5-Carboxybicyclo[2.2.1]hept-2-yl acrylate and 5-carboxy-5-methylbicyclo[2.2.1]hept-2-yl methacrylate, which can be used for optical lenses and polymeric materials, were synthesized by reaction of cyclopentadiene and methacrylic acid with a yield of 80.0–90.5%.

     

A new dual probe for hydrogen abstraction

A new dual (fluorescent and spin) probe is described, where a N-aryl-2,4,6-triphenylpyridinium fluorophore is attached to a TEMPO fragment through an amide link. The resulting sensor 4 was evaluated as a hydrogen-abstracting agent in acetonitrile and in an aqueous solution of reduced Triton-X 100, being as resistant to hydrolysis as quinoline-TEMPO 1, but more hydrophobic than this probe.     

Binding of phosphate with a simple hexaaza polyammonium macrocycle

A mixture of dihydrogen phosphate and phosphoric acid has been crystallized with a hexaprotonated 26-membered polyammonium macrocycle, 1,4,7,14,17,20-hexaazacyclohexacosane, as the counterion. The complex crystallizes in the monoclinic space group P2(1)/c with unit cell parameters of a = 10.006(2) A, b = 12.525(1) A, c = 19.210(2) A, beta = 102.91(1) degrees, and V = 2346.6(5) A3. The hexaprotonated macrocycle is located on a crystallographic center of inversion and is surrounded by eight phosphate anions. Six of the phosphates are dihydrogen phosphates (H2PO4-), and the other two are neutral phosphoric acid molecules. Intricate hydrogen-bonding networks, involving the anionic and neutral phosphates and the protonated macrocycle, dominate the crystal lattice. Potentiometric studies using NaCl as the supporting electrolyte indicate high formation constants for the triprotonated macrocycle, H3L3+, with PO4(3-) at pH approximately 9.5 (log K = 4.55(4)), for the tetraprotonated macrocycle, H4L4+, with monohydrogen phosphate, HPO4(2-), at pH approximately 8.0 (log K = 6.01(3)), and for ditopic complexes with H5L5+ and H6L6+ and dihydrogen phosphate, H2PO4-, at pH approximately 4.0 (log K = 6.16(6)) and pH approximately 2.5 (log K = 6.44(5)), respectively. The ditopic behavior in the simple polyazamacrocycle receptor is a somewhat unusual occurrence, as is the finding of phosphoric acid species in the crystal structure.