Self-assembly of chiral molecular honeycomb networks on Au(111)

Self-assembly of the specifically designed 3-fold symmetric 1,3,5-trikis(4'-carboxylphenyl)-2,4,6-trikis(4'-tert-butylphenyl)-benzene molecule on a Au(111) surface is investigated by means of in situ ultrahigh vacuum scanning tunneling microscopy. A variety of chiral honeycomb networks with increasing interpore distance is observed. Experiments and force field calculations reveal that the formation of the two-dimensional hexagonal porous networks is driven by a balance of molecular close-packing within half-unit cells and cyclic hydrogen bonding dimerization between half-unit cells. The honeycomb networks are shown to be chiral owing to asymmetric molecular close-packing within the half-unit cells.     

Coverage-dependent formation of chiral ethylthiolate-Au complexes on Au(111)

We studied the coverage-dependent self-assembly of the flat-lying phase of ethylthiolate on Au(111). At low coverage, we observed the formation of short stripes of chiral Au-(SC(2)H(5))(2) complexes that arrange in a disordered phase. The latter grow partly at the expense of the native Au(111) surface reconstruction, which is fully lifted for a coverage of ～0.60 ML. We found that the lift of the reconstruction and evaporation from step edges are competing adatom sources. Close to saturation coverage (0.70 to 0.75 ML), large, well-ordered domains with a (8 × √3)rectangular superstructure formed. Alternation of chirality was found in adjacent stripes as already reported for other short alkanethiolates. We suggest that, because of a simple geometrical consideration, the chirality should, on the contrary, be preserved in the stripe phase of longer alkanethiolates.     

Hierarchical chiral framework based on a rigid adamantane tripod on Au(111)

We have investigated the tripod-shaped bromo adamantane trithiol (BATT) molecule on Au(111) using scanning tunneling microscopy (STM) at 4.7 K. Adsorption of BATT leads to formation of highly ordered self-assembled monolayers (SAMs) with three-point contacts on Au(111). The structure of these SAMs has been found to have a two-tiered hierarchical chiral organization. The self-assembly of achiral monomers produces chiral trimers, which then act as the building blocks for chiral hexagonal supermolecules. SAMs begin to form from the racemic mixture of assembled molecules in ribbon-shaped islands, followed by the transformation to enantiomeric domains when SAM layers develop two-dimensionally across hcp domains. Such a chiral phase transition at the two-dimensional domain can arise from a subtle balance between molecule-substrate and intermolecular interactions. Two structural factors, the S atom (stabilization) and the methylene groups (chirality) located just above the S atom, induce the chiral ordering of BATT on Au(111).     

Two-dimensional supramolecular organization of copper octaethylporphyrin and cobalt phthalocyanine on Au(111): molecular assembly control at an electrochemical interface

Mixed adlayers of 2,3,7,8,12,13,17,18-octaethyl-21H,23H-porphine copper(II) (CuOEP) and cobalt(II) phthalocyanine (CoPc) were prepared by immersing Au(111) substrate in a benzene solution containing CuOEP and CoPc molecules, and they were investigated in 0.1 M HClO(4) by cyclic voltammetry (CV) and in-situ scanning tunneling microscopy (STM). The composition of the mixed adlayer consisting of CuOEP and CoPc molecules was found to vary depending on the immersion time. CoPc molecules displaced CuOEP molecules during the modification process with increasing immersion time, and the CuOEP molecules were completely replaced with CoPc molecules in the mixed solution after a long modification time. The two-component adlayer consisting of CuOEP and CoPc, which has a structure with the constituent molecules arranged alternately, was found to form either a p(9 x 3(square root)7R - 40.9 degrees) or a p(9 x 3(square root)7R - 19.1 degrees) structure, each involving two molecules on the Au(111) surface. The surface mobility and the molecular reorganization of CuOEP and CoPc were accelerated by modulation of the electrode potential. Different surface structures were produced at different electrode potentials, and hence potential modulation should allow a precisely controllable phase separation to take place in aqueous HClO(4).     

Influence of molecular geometry on the adsorption orientation for oligophenylene-ethynylenes on Au(111)

The adsorption structures formed from a class of oligophenylene-ethynylenes on Au(111) under ultrahigh vacuum conditions is compared based on high-resolution scanning tunneling microscopy (STM) measurements. The molecules consist of three or four benzene rings connected by ethynylene spokes and are all functionalized identically with an aldehyde, a hydroxyl, and a bulky tert-butyl group. Compounds with the conjugated spokes placed in the para, meta, and threefold configurations were previously found to exclusively form molecular layers with flat-lying adsorption geometries. In contrast, the associated compound with spokes in the ortho configuration surprisingly differs in its adsorption by forming only structures with an upright adsorption orientation. The packing density for the structures formed by the compound with the ortho configuration is less dense than that in conventional self-assembled monolayers while still keeping the conducting backbone in an upright orientation. These structures are thus interesting from the perspective of performing single-molecule conduction measurements on the oligophenylene-ethynylene backbones.     

Time-dependent organization and wettability of decanethiol self-assembled monolayer on Au(111) investigated with STM

A detailed study on the time-dependent organization of a decanethiol self-assembled monolayer (SAM) at a designed solution concentration onto a Au(111) surface has been performed with scanning tunneling microscopy (STM). The SAMs were prepared by immersing Au(111) into an ethanol solution containing 1 microM decanethiol with different immersion times. STM images revealed the formation process and adlayer structure of the SAMs. It was found that the molecules self-organized into adlayers from random separation to a well-defined structure. From 10 s, small domains with ordered molecular organization appeared, although random molecules could be observed on Au(111) at the very initial stage. At 30 s, the SAM consisted of uniform short stripes. Each stripe consisted of sets of decanethiol mainly containing eight molecules. With the immersion time increasing, the length of the stripes increased. At 5 min, the alkyl chains overlapped each other between the adjacent stripes, indicating the start of a stacked process. After immersing Au(111) in decanethiol solution for 3 days, a densely packed adlayer with a (radical 3 x radical 3)R30 degrees structure was observed. The formation process and structure of decanethiol SAMs are well related to sample preparation conditions. The wettability of the decanethiolate SAM-modified Au(111) surface was also investigated.     

Controlling Metalation Reaction of Phthalocyanine with Cobalt at Single-Molecule Level on Au(111) Surface

Metalation reaction of metal-free phthalocyanine molecule with Co atom adsorbed on Au(111) surface has been studied in situ at single atom/molecule scale by low-temperature scanning tunneling microscopy (STM) experiment combined with simulations based on density function theory calculations. Through manipulations using STM tip, we showed a controlled manner to have a single metal-free phthalocyanine molecule react with a Co atom to form Co phthalocyanine molecule. In this reaction process, an intermediate state originating from $\pi$-d interaction between the metal-free phthalocyanine molecule and Co atom has been identified. Moreover, we also revealed that the redox reaction represented as bond breaking and bond forming relative to the Co and pyrrolic N atoms, not pyrrolic H atoms, is a key process for dehydrogenation and metalation reaction. Our DFT calculations provided theoretical supporting for the above conclusions, and further understanding of the related mechanisms.     

Dipolar and nonpolar altitudinal molecular rotors mounted on an Au(111) surface

We describe the preparation of a compound whose molecules consist of two metal sandwich stands carrying tentacles with affinity to metal surfaces and holding an axle that carries a dipolar or a nonpolar rotator. The dipolar rotor exists as three pairs of enantiomers, rapidly interconverting at room temperature. When mounted on a gold surface, each molecule represents a chiral altitudinal rotor, with the rotator axle parallel to the surface. The surface-mounted rotor molecules are characterized by several spectroscopic and imaging techniques. At any one time, in about one-third of the dipolar rotors the rotator is free to turn and the direction of its dipole can be flipped by the electric field applied by an STM tip, as revealed by differential barrier height imaging. Molecular dynamics calculations suggest that electric field normal to the surface causes members of one pair of enantiomers to rotate unidirectionally.     

氧化锌有序结构在Au(111)和Cu(111)上的生长

利用NO₂或O₂作为氧化剂,研究了氧化锌在Au(111)和Cu(111)上的生长和结构。NO₂表现了更好的氧化性能,有利于有序氧化锌纳米结构或薄膜的生长。在Au(111)和Cu(111)这两个表面上,化学计量比氧化锌都形成非极性的平面化ZnO(0001)的表面结构。在Au(111)上,NO₂气氛下室温沉积锌倾向于形成双层氧化锌纳米结构;而在更高的沉积温度下,在NO₂气氛中沉积锌则可同时观测到单层和双层氧化锌纳米结构。O₂作为氧化剂时可导致形成亚化学计量比的ZnO_x结构。由于铜和锌之间的强相互作用会促进锌的体相扩散,并且铜表面可以被氧化形成表面氧化物,整层氧化锌在Cu(111)上的生长相当困难。我们通过使用NO₂作为氧化剂解决了这个问题,生长出了覆盖Cu(111)表面的满层有序氧化锌薄膜。这些有序氧化锌薄膜表面显示出莫尔条纹,表明存在一个ZnO和Cu(111)之间的莫尔超晶格。实验上观察到的超晶格结构与最近理论计算提出的Cu(111)上的氧化锌薄膜结构相符,具有最小应力。我们的研究表明,氧化锌薄膜的表界面结构可能会随氧化程度或氧化剂的不同而变化,而Cu(111)的表面氧化也可能影响氧化锌的生长。当Cu(111)表面被预氧化成铜表面氧化物时,ZnO_x的生长模式会发生变化,锌原子会受到铜氧化物晶格的限域形成单位点锌。我们的研究表明了氧化锌的生长需要抑制锌向金属基底的扩散,并阻止亚化学计量比ZnO_x的形成。因此,使用原子氧源有利于在Au(111)和Cu(111)表面上生长有序氧化锌薄膜。     

Adsorptive behavior of dimethylglyoxime on Au(111)

Dimethylglyoxime (DMG) adsorbed on Au(111) was investigated using electrochemical scanning tunneling microscopy (STM) and X-ray photoelectron spectroscopy (XPS). STM experiments revealed three different structures of adsorbed DMG at open circuit potential (~0.07 V versus Ag/AgCl): (2√3×2√3)R30°-α, (2√3×4√3)R30°-β, and (2√3×4√3)R30°-γ. The coverage of adsorbed DMG obtained using XPS was 0.33. A combination of structural and quantitative information identified the adsorbed DMG as an anionic tetramer, held together by intermolecular hydrogen bonding and arrayed in three ordered patterns. Domains of adsorbed DMG underwent phase transitions between the observed structures, most likely due to the influence of the STM tip. However, a significant correlation between the observed structures and the imaging conditions was not found. The ordered layers existed only at open circuit potential as evidenced by their disappearance when the potential was shifted to 0.2 or -0.15 V. The ordered layers were also removed by immersion in a solution of Ni(2+), implying that the adsorbed DMG was converted to a soluble dimer complex with the Ni(2+) ion. This particular observation is discussed in terms of the rigidity of the organic network.     

Self-assembly of alkanols on Au(111) surfaces

Self-assembled monolayers (SAMs) of alkanols (1-C(N)H(2N+1)OH) with varying carbon-chain lengths (N = 10-30) have been systematically studied by means of scanning tunneling microscopy (STM) at the interfaces between alkanol solutions (or liquids) and Au(111) surfaces. The carbon skeletons were found to lie flat on the surfaces. This orientation is consistent with SAMs of alkanols on highly oriented pyrolytic graphite (HOPG) and MoS2 surfaces, and also with alkanes on reconstructed Au(111) surfaces. This result differs from a prior report, which claimed that 1-decanol molecules (N = 10) stood on their ends with the OH polar groups facing the gold substrate. Compared to alkanes, the replacement of one terminal CH3 group with an OH group introduces new bonding features for alkanols owing to the feasibility of forming hydrogen bonds. While SAMs of long-chain alkanols (N > 18) resemble those of alkanes, in which the aliphatic chains make a greater contribution, hydrogen bonding plays a more important role in the formation of SAMs of short-chain alkanols. Thus, in addition to the titled lamellar structure, a herringbone-like structure, seldom seen in SAMs of alkanes, is dominant in alkanol SAMs for values of N < 18. The odd-even effect present in alkane SAMs is also present in alkanol SAMs. Thus, the odd N alkanols (alkanols with an odd number of carbon atoms) adopt perpendicular lamellar structures owing to the favorable interactions of the CH3 terminal groups, similar to the result observed for odd alkanes. In contrast to alkanes on Au(111) surfaces, for which no SAMs on an unreconstructed gold substrate were observed, alkanols are capable of forming SAMs on either the reconstructed or the unreconstructed gold surfaces. Structural models for the packing of alkanol molecules on Au(111) surfaces have been proposed, which successfully explain these experimental observations.     

Reconstruction-Dependant Self-Assembly of n-Alkanes on Au(111)

Highly ordered molecular monolayers at the solid/liquid interfaces play a critical role in many technologically important areas, such as lubrication, adhesion, molecular recognition and chemical reactions. Although there are a number of results on the monolayers of organic molecules physisorbed on the solid surfaces being reported, the role of the substrate lattice parameters, the substrate structures and the defects in the formation of the highly ordered monolayers has not yet well explored. In this paper, we reported the scanning tunneling microscopy (STM) studies of the self-assembling phenomenon of n-alkanes in the interfaces between n-alkane solutions and the Au(111) surfaces.     

Scanning tunneling microscopy investigation of a supramolecular self-assembled three-dimensional chiral prism on a Au(111) surface

Spontaneous symmetry-breaking of a racemic mixture of supramolecular triginal prisms into chiral domains on a Au(111) surface is observed by scanning tunneling microscopy (STM). High-resolution STM analysis enables the structural aspects of each enantiomeric domain to be elucidated. The ability to resolve chirality on achiral surfaces has potential applications in heterogeneous stereoselective synthesis and catalysis.     

Chiral structures of 6,12-dibromochrysene on Au(111) and Cu(111) surfaces

Nanoscale low-dimensional chiral architectures are increasingly receiving scientific interest, because of their potential applications in many fields such as chiral recognition, separation and transformation. Using 6,12-dibromochrysene (DBCh), we successfully constructed and characterized the large-area two-dimensional chiral networks on Au(111) and one-dimensional metal-liganded chiral chains on Cu(111) respectively. The reasons and processes of chiral transformation of chiral networks on Au(111) were analyzed. We used scanning tunneling spectroscopy (STS) to analyze the electronic state information of this chiral structure. This work combines scanning tunneling microscopy (STM) with non-contact atomic force microscopy (nc-AFM) techniques to achieve ultra-high-resolution characterization of chiral structures on low-dimensional surfaces, which may be applied to the bond analysis of functional nanofilms. Density functional theory (DFT) was used to simulate the adsorption behavior of the molecular and energy analysis in order to verify the experimental results.     

Au adatoms in self-assembly of benzenethiol on the Au(111) surface

Self-assembly of benzenethiol at low coverage on Au(111) was studied using low-temperature scanning tunneling microscopy. Phenylthiolate species (PhS), formed by thermal dehydrogenation of the parent PhSH molecule, was found to self-assemble into surface-bonded complexes with gold adatoms. Each complex involves two PhS species and one gold adatom. The PhS species form either cis- or trans-geometry relative to each other. At a higher coverage, the complexes coalesce, most likely due to the formation of weak C-H...S hydrogen bonds facilitated by the spatial arrangement of the PhS groups. Our findings thus establish that the self-assembly of arenethiols on the Au(111) surface is driven by gold adatom chemistry, which has recently been found to be the key ingredient in the self-assembly of alkanethiols on gold.     

Quasi chiral phase separation in a two-dimensional orientationally disordered system: 6-nitrospiropyran on Au(111)

The adsorption and chiral expression of 6-nitrospiropyran (SP6) molecules on a Au(111) surface are studied by scanning tunneling microscopy (STM) in combination with density functional theory (DFT) calculations. Both the chirality and the adsorption orientation of each adsorbed SP6 molecule are determined. The racemic mixture of SP6 enantiomers forms two-dimensional (2D) domains with same close packed positional orders but different internal orientational structures due to the random distribution of two adsorption orientations in each domain. However, all these orientationally disordered 2D domains undergo spontaneous quasi chiral phase separation; the 2D SP6 domains separate into 1D homochiral chains in which the SP6 molecules adopt two orientations randomly. This novel phenomenon is attributed to the preferential formation of the energetic favorable configurations with both the C-H...O weak hydrogen bonds and the pi-stacking of the two moieties of each SP6 molecule.     

Ultrathin monolayer of rubrene on Au(111) induced by charge transfer

An ultrathin self‐assembly monolayer of rubrene on Au(111) has been fabricated and studied by scanning tunneling microscopy. The apparent thickness of such monolayer is 0.08 nm and close to the radius of a carbon atom. Moreover, the rubrene molecules within the second layer prefer adsorbing on to the positions corresponding to the herringbone structure underneath the Au(111)–() while the Au surface is fully covered by a monolayer of rubrene. With the assistant with theoretical simulations, we reveal that small apparent height of such monolayer is due to the coupling between the molecular orbitals and the gold surface. About 0.237 electron per rubrene molecule is transferred to the surface, and as a consequence, an interfacial dipole is formed on the rubrene/Au interface. The formation of such interfacial dipole induced by charge transfer from molecules to surfaces is believed to be applied in organic molecules adsorbed on metal surfaces. Copyright © 2011 John Wiley & Sons, Ltd.     

Imaging the Bonds of Dehalogenated Benzene Radicals on Cu(111) and Au(111)

Dissociative adsorption of doubly substituted benzene molecules leads to formation of benzyne radicals. In this study, co‐adsorbed hydrogen molecules are used in scanning tunneling hydrogen microscopy to enhance the contrast of the meta‐ and the para‐isomers of these radicals on Cu(111) and Au(111). Up to three hydrogen molecules are attached to one radical. One hydrogen molecule reveals the orientation of the carbon ring and its adsorption site, allowing discrimination between the two radicals. Two hydrogen molecules reflect the bond picture of the carbon skeleton and reveals that adsorption on Cu(111) distorts the meta‐ isomer differently from its gas‐phase distortion. Three hydrogen molecules allow us to determine the bond picture of a minor species.     

Electrodeposition of Au monolayer on Pt(111) mediated by self-assembled monolayers

In-situ scanning tunneling microscopy (STM), cyclic voltammetry (CV), and infrared reflection-adsorption spectroscopy (IRRAS) have been used to examine the electrodeposition of gold onto Pt(111) electrodes modified with benzenethiol (BT) and benzene-1,2-dithiol (BDT) in 0.1 M HClO4 containing 10 microM HAuCl4. Both BT and BDT were attached to Pt(111) via one sulfur headgroup. STM and IRRAS results indicated that the other SH group of BDT was pendant in the electrolyte. Both BT and BDT formed (2 x 2) structures at the coverage of 0.25, and they were transformed into (square root(3) x square root(3))R30 degrees as the coverage was raised to 0.33. These two organic surface modifiers resulted in 3D and 2D gold islands at BT- and BDT-coated Pt(111) electrodes, respectively. The pendant SH group of BDT could interact specifically with gold adspecies to immobilize gold adatoms on the Pt(111) substrate, which yields a 2D growth of gold deposition. Molecular resolution STM revealed an ordered array of (6 x 2 square root(13)) after a full monolayer of gold was plated on the BDT/Pt(111) electrode. Since BDT was strongly adsorbed on Pt(111), gold adatoms only occupied free sites between BDT admolecules on Pt(111). This is supported by a stripping voltammetric analysis, which reveals no reductive desorption of BDT admolecules at a gold-deposited BDT/Pt(111) electrode. It seems that the BDT adlayer acted as the template for gold deposit on Pt(111). In contrast, a BT adlayer yielded 3D gold deposit on Pt(111). This study demonstrates unambiguously that organic surface modifiers could contribute greatly to the electrodeposition of metal adatoms.