Second-Coordination Sphere Effects on Selectivity and Specificity of Heme and Nonheme Iron Enzymes

Mononuclear iron-containing enzymes are highly versatile oxidants that often react stereospecifically and/or regioselectively with substrates. Combined experimental and computational studies on heme monooxygenases, nonheme iron dioxygenases and halogenases have revealed the intricate details of the second-coordination sphere, which determine this specificity and selectivity. These second-coordination sphere effects originate from the positioning of the substrate and oxidant, which involve the binding of the co-factors and substrate into the active site of the protein. In addition, some enzymes affect the selectivity and reactivity through charge-stabilization from nearby bound cations/anions, an induced electric field or through the positioning of salt bridges and hydrogen-bonding interactions to first-coordination sphere iron ligands and/or the substrate. Examples of all of these second-coordination sphere effects in iron-containing enzymes and how these influence structure and reactivity are given.     

Highly Reactive Nonheme Iron(III) Iodosylarene Complexes in Alkane Hydroxylation and Sulfoxidation Reactions

High‐spin iron(III) iodosylarene complexes bearing an N‐methylated cyclam ligand are synthesized and characterized using various spectroscopic methods. The nonheme high‐spin iron(III) iodosylarene intermediates are highly reactive oxidants capable of activating strong C? H bonds of alkanes; the reactivity of the iron(III) iodosylarene intermediates is much greater than that of the corresponding iron(IV) oxo complex. The electrophilic character of the iron(III) iodosylarene complexes is demonstrated in sulfoxidation reactions.     

Enhanced Reactivities of Iron(IV)‐Oxo Porphyrin π‐Cation Radicals in Oxygenation Reactions by Electron‐Donating Axial Ligands

The proximal axial ligand in heme iron enzymes plays an important role in tuning the reactivities of iron(IV)‐oxo porphyrin π‐cation radicals in oxidation reactions. The present study reports the effects of axial ligands in olefin epoxidation, aromatic hydroxylation, alcohol oxidation, and alkane hydroxylation, by [(tmp)^+. Fe^IV(O)(p‐Y‐PyO)]⁺ ( 1 ‐Y) (tmp=meso‐tetramesitylporphyrin, p‐Y‐PyO=para‐substituted pyridine N‐oxides, and Y=OCH₃, CH₃, H, Cl). In all of the oxidation reactions, the reactivities of 1 ‐Y are found to follow the order 1 ‐OCH₃ > 1 ‐CH₃ > 1 ‐H > 1 ‐Cl; negative Hammett ρ values of ?1.4 to ?2.7 were obtained by plotting the reaction rates against the σ_p values of the substituents of p‐Y‐PyO. These results, as well as previous ones on the effect of anionic nucleophiles, show that iron(IV)‐oxo porphyrin π‐cation radicals bearing electron‐donating axial ligands are more reactive in oxo‐transfer and hydrogen‐atom abstraction reactions. These results are counterintuitive since iron(IV)‐oxo porphyrin π‐cation radicals are electrophilic species. Theoretical calculations of anionic and neutral ligands reproduced the counterintuitive experimental findings and elucidated the root cause of the axial ligand effects. Thus, in the case of anionic ligands, as the ligand becomes a better electron donor, it strengthens the FeO? H bond and thereby enhances its H‐abstraction activity. In addition, it weakens the Fe?O bond and encourages oxo‐transfer reactivity. Both are Bell–Evans–Polanyi effects, however, in a series of neutral ligands like p‐Y‐PyO, there is a relatively weak trend that appears to originate in two‐state reactivity (TSR). This combination of experiment and theory enabled us to elucidate the factors that control the reactivity patterns of iron(IV)‐oxo porphyrin π‐cation radicals in oxidation reactions and to resolve an enigmatic and fundamental problem.     

Paramagnetic NMR Shifts for Saddle-Shaped Five-Coordinate Iron(III) Porphyrin Complexes with Intermediate-Spin Structure

Calculable results: Complex density functional calculations and spin distribution analyses have been performed for planar and saddled iron(III) porphyrin complexes. The spin populations and the extent of the interactions between the metal and the porphyrin orbitals were determined, which can explain the large change of meso-carbon atom chemical shifts observed for different porphyrin ligands.     

Experimental and Computational Evidence for the Mechanism of Intradiol Catechol Dioxygenation by Non‐Heme Iron(III) Complexes

Catechol intradiol dioxygenation is a unique reaction catalyzed by iron‐dependent enzymes and non‐heme iron(III) complexes. The mechanism by which these systems activate dioxygen in this important metabolic process remains controversial. Using a combination of kinetic measurements and computational modelling of multiple iron(III) catecholato complexes, we have elucidated the catechol cleavage mechanism and show that oxygen binds the iron center by partial dissociation of the substrate from the iron complex. The iron(III) superoxide complex that is formed subsequently attacks the carbon atom of the substrate by a rate‐determining C?O bond formation step.     

Silicon–Heteroaromatic [FeFe] Hydrogenase Model Complexes: Insight into Protonation,Electrochemical Properties,and Molecular Structures

To learn from Nature how to create an efficient hydrogen‐producing catalyst, much attention has been paid to the investigation of structural and functional biomimics of the active site of [FeFe]‐hydrogenase. To understand their catalytic activities, the μ‐S atoms of the dithiolate bridge have been considered as possible basic sites during the catalytic processes. For this reason, a series of [FeFe]‐H₂ase mimics have been synthesized and characterized. Different [FeFe]‐hydrogenase model complexes containing bulky Si–heteroaromatic systems or fluorene directly attached to the dithiolate moiety as well as their mono‐PPh₃‐substituted derivatives have been prepared and investigated in detail by spectroscopic, electrochemical, X‐ray diffraction, and computational methods. The assembly of the herein reported series of complexes shows that the μ‐S atoms can be a favored basic site in the catalytic process. Small changes in the (hetero)‐aromatic system of the dithiolate moiety are responsible for large differences in their structures. This was elucidated in detail by DFT calculations, which were consistent with the experimental results.     

Spontaneous Reduction of Mononuclear High‐Spin Iron(III) Complexes to Mononuclear Low‐Spin Iron(II) Complexes in Aqueous Media and Nuclease Activity via Self‐Activation

Mononuclear high‐spin [Fe^III(Pyimpy)Cl₃]?2 CH₂Cl₂ ( 1 ?2 CH₂Cl₂) and [Fe^III(Me‐Pyimpy)Cl₃] ( 2 ), as well as low‐spin Fe^II(Pyimpy)₂](ClO₄)₂ ( 3 ) and [Fe^II(Me‐Pyimpy)₂](ClO₄)₂ ( 4 ) complexes of tridentate ligands Pyimpy and Me‐Pyimpy have been synthesized and characterized by analytical techniques, spectral, and X‐ray structural analyses. We observed an important type of conversion and associated spontaneous reduction of mono‐chelated high‐spin Fe^III ( 1 ?2 CH₂Cl₂ and 2 ) complexes to low‐spin bis‐chelated Fe^II complexes 3 and 4 , respectively. This process has been explored in detail by UV/Vis, fluorescence, and ¹H NMR spectroscopic measurements. The high positive potentials observed in electrochemical studies suggested a better stabilization of Fe^II centers in 3 and 4 . Theoretical studies by density functional theory (DFT) calculations supported an increased stabilization for 3 in polar solvents. Self‐activated nuclease activity of complexes 1 ?2CH₂Cl₂ and 2 during their spontaneous reduction was examined for the first time and the mechanism of nuclease activity was investigated.     

Cytochrome P450 compound I in the plane wave pseudopotential framework: GGA electronic and geometric structure of thiolate‐ligated iron(IV)–oxo porphyrin

The cytochromes P450 constitute a ubiquitous family of metalloenzymes, catalyzing manifold reactions of biological and synthetic importance via a thiolate‐ligated iron‐oxo (IV) porphyrin radical species denoted compound I (Cpd I). Experimental investigations have implicated this intermediate in a broad spectrum of biophysically interesting phenomena, further augmenting the importance of a Cpd I model system. Ab initio molecular dynamics, including Car–Parrinello and path integral methods, conjoin electronic structure theory with finite temperature simulation, affording tools most valuable to approach such enzymes. These methods are typically driven by density functional theory (DFT) in a plane‐wave pseudopotential framework; however, existing studies of Cpd I have been restricted to localized Gaussian basis sets. The appropriate choice of density functional and pseudopotential for such simulations is accordingly not obvious. To remedy this situation, a systematic benchmarking of thiolate‐ligated Cpd I is performed using several generalized‐gradient approximation (GGA) functionals in the Martins–Troullier and Vanderbilt ultrasoft pseudopotential schemes. The resultant electronic and structural parameters are compared to localized–basis DFT calculations using GGA and hybrid density functionals. The merits and demerits of each scheme are presented in the context of reproducing existing experimental and theoretical results for Cpd I. © 2013 Wiley Periodicals, Inc.     

Axial Ligand and Spin‐State Influence on the Formation and Reactivity of Hydroperoxo–Iron(III) Porphyrin Complexes

The present study focuses on the formation and reactivity of hydroperoxo–iron(III) porphyrin complexes formed in the [Fe^III(tpfpp)X]/H₂O₂/HOO^? system (TPFPP=5,10,15,20‐tetrakis(pentafluorophenyl)‐21H,23H‐porphyrin; X=Cl^? or CF₃SO₃^?) in acetonitrile under basic conditions at ?15 °C. Depending on the selected reaction conditions and the active form of the catalyst, the formation of high‐spin [Fe^III(tpfpp)(OOH)] and low‐spin [Fe^III(tpfpp)(OH)(OOH)] could be observed with the application of a low‐temperature rapid‐scan UV/Vis spectroscopic technique. Axial ligation and the spin state of the iron(III) center control the mode of O? O bond cleavage in the corresponding hydroperoxo porphyrin species. A mechanistic changeover from homo‐ to heterolytic O? O bond cleavage is observed for high‐ [Fe^III(tpfpp)(OOH)] and low‐spin [Fe^III(tpfpp)(OH)(OOH)] complexes, respectively. In contrast to other iron(III) hydroperoxo complexes with electron‐rich porphyrin ligands, electron‐deficient [Fe^III(tpfpp)(OH)(OOH)] was stable under relatively mild conditions and could therefore be investigated directly in the oxygenation reactions of selected organic substrates. The very low reactivity of [Fe^III(tpfpp)(OH)(OOH)] towards organic substrates implied that the ferric hydroperoxo intermediate must be a very sluggish oxidant compared with the iron(IV)–oxo porphyrin π‐cation radical intermediate in the catalytic oxygenation reactions of cytochrome P450.     

含氮药物分子中氮a-位碳氢键离解能的理论研究

本文利用G3B3 和CBS-Q高精度理论方法检验了一系列胺类有机化合物中α-碳氢键离解能的实验测量值,在此基础上筛选出(U)BHandH/6-311++G(2df, 2p)//(U)B3LYP/6-31G(d)方法,发现其可以准确快速的预测氮α-碳氢键离解能。运用该方法研究了若干含氮药物分子,发现氮α-碳氢键离解能随药物分子结构发生明显变化。为了阐明其变化规律,系统研究单取代和双取代基效应,并解释了不同取代基效应的来源。     

Hydrogen peroxide decomposition by a non-heme iron(III) catalase mimic: a DFT study

Non-heme iron(III) complexes of 14-membered tetraaza macrocycles have previously been found to catalytically decompose hydrogen peroxide to water and molecular oxygen, like the native enzyme catalase. Here the mechanism of this reaction is theoretically investigated by DFT calculations at the (U)B3LYP/6-31G* level, with focus on the reactivity of the possible spin states of the FeIII complexes. The computations suggest that H2O2 decomposition follows a homolytic route with intermediate formation of an iron(IV) oxo radical cation species (L.+FeIV==O) that resembles Compound I of natural iron porphyrin systems. Along the whole catalytic cycle, no significant energetic differences were found for the reaction proceeding on the doublet (S=1/2) or on the quartet (S=3/2) hypersurface, with the single exception of the rate-determining O--O bond cleavage of the first associated hydrogen peroxide molecule, for which reaction via the doublet state is preferred. The sextet (S=5/2) state of the FeIII complexes appears to be unreactive in catalase-like reactions.     

Mononuclear Nonheme Iron(III)‐Iodosylarene and High‐Valent Iron‐Oxo Complexes in Olefin Epoxidation Reactions

High‐spin iron(III)‐iodosylarene complexes are highly reactive in the epoxidation of olefins, in which epoxides are formed as the major products with high stereospecificity and enantioselectivity. The reactivity of the iron(III)‐iodosylarene intermediates is much greater than that of the corresponding iron(IV)‐oxo complex in these reactions. The iron(III)‐iodosylarene species—not high‐valent iron(IV)‐oxo and iron(V)‐oxo species—are also shown to be the active oxidants in catalytic olefin epoxidation reactions. The present results are discussed in light of the long‐standing controversy on the one oxidant versus multiple oxidants hypothesis in oxidation reactions.     

Mechanisms in the Reaction of Palladium(II)–π‐Allyl Complexes with Aryl Halides: Evidence for NHC Exchange Between Two Palladium Complexes

A detailed experimental and DFT study (PBE level) of the reaction of [Pd(η³‐C₃H₅)(tmiy)(PR₃)]BF₄ (tmiy=tetramethylimidazolin‐2‐ylidene, PR₃=phosphane), precursors to monoligated Pd⁰ species, with aryl electrophiles yielding 2‐arylimidazolium salt is reported. Experiments establish that an autocatalytic ligand transfer mechanism is preferred over Pd^IV and σ‐bond metathesis pathways, and that transmetalation is the rate‐determining step. Calculations indicate that the key step involves the concerted exchange of NHC and iodo ligands between two different Pd^II complexes. This is corroborated by experimental results showing the slower reaction of complexes containing the bulkier dipdmiy (dipdmiy = diisopropyldimethylimidazolin‐2‐ylidene).     

ATRP/OMRP/CCT Interplay in Styrene Polymerization Mediated by Iron(II) Complexes: A DFT Study of the α‐Diimine System

A DFT study of various model systems has addressed the interference of catalytic chain transfer (CCT) as a function of the R² substituent in the atom‐transfer radical polymerization (ATRP) of styrene catalyzed by [FeCl₂(R¹N?C(R²)?C(R²)?NR¹)] complexes. All model systems used R¹=CH₃ in place of the experimental Cy and tBu substituents and 1‐phenylethyl in place of the polystyrene (PS) chain. A mechanistic investigation of 1) ATRP activation, 2) radical trapping in organometallic‐mediated radical polymerization (OMRP), and 3) pathways to the hydride CCT intermediate was conducted with a simplified system with R²=H. This study suggests that CCT could occur by direct hydrogen‐atom transfer without any activation barrier. Further analysis of more realistic models with R²=p‐C₆H₄F or p‐C₆H₄NMe₂ suggests that the electronic effect of the aryl para substituents significantly alters the ATRP activation barrier. Conversely, the hydrogen‐atom‐transfer barrier is essentially unaffected. Thus, the greater ATRP catalytic activity of the p‐NMe₂ system makes the background CCT process less significant. The DFT study also compares the [FeCl₂(R¹N?C(R²)?C(R²)?NR¹)] systems with a diaminobis(phenolato) derivative for which the CCT process shows even greater accessibility but has less incidence because of faster ATRP chain growth and interplay with a more efficient OMRP trapping. The difference between the two systems is attributed to destabilization of the Fe^II catalyst by the geometric constraints of the tetradentate diaminobis(phenolato) ligand.