Scanning tunneling microscope imaging of (CH3S)2 on Cu(111)

Scanning tunneling microscope (STM) images of isolated molecules of dimethyl disulfide, (CH(3)S)(2), adsorbed on the Cu(111) surface were successfully obtained at a sample temperature of 4.7 K. A (CH(3)S)(2) molecule appears as an elliptic protrusion in the STM images. From density functional theory calculation, it was suggested that the bright part in the protrusion corresponds to the molecular orbital which is widely spread around H atoms in each CH(3) group in the (CH(3)S)(2) molecule. The STM images revealed that the molecules have a total of six equivalent adsorption orientations on Cu(111), which are given by the combination of three equivalent adsorption sites and two conformational isomers for each adsorption site.     

Adsorption mode of cinchonidine on Cu(111) surface

The adsorption mode of cinchonidine on Cu(111) was directly obtained by in situ STM. The molecules were found to adsorb on the substrate surface and form a long-range ordered adlayer with (4 x 4) symmetry. While the quinoline rings lie parallel to Cu(111), the chiral quinuclidine moiety extends out of the surface. The enantioselectivity of catalysts may relate to this special adsorption conformation of cinchonidine on the surface.     

Adsorption and coordination of tartaric acid enantiomers on Cu(111) in aqueous solution

Chiral modifiers have gained much attention because they can induce high enantioselectivity on reactive metal surface in heterogeneous enantioselective catalysis. The high enantioselectivity is attributed to that the chirality of modifiers is bestowed onto the metal surface upon adsorption. Much study on the adsorption of modifiers on metal surface has been performed in an ultrahigh vacuum. In this paper, the adsorption of tartaric acid on Cu(111) has been studied by electrochemical scanning tunneling microscopy (STM) in aqueous solution. It is found that (R,R)-tartaric acid and (S,S)-tartaric acid can form a well-ordered adlayer on the Cu(111) surface with a (4 x 4) symmetry. A dimeric structure is proposed in the temporary model from STM observation.     

CoPc adsorption on Cu(111): Origin of the C4 to C2 symmetry reduction

The adsorption of phthalocyanines (Pc) to various surfaces has recently been reported to lead to a lowering of symmetry from C4 to C2 in scanning tunneling microscope (STM) images. Possible origins of the reduced symmetry involve the electronic structure or geometric deformation of the molecules. Here, the origin of the reduction is clarified from a comprehensive theoretical study of CoPc adsorbed on the Cu(111) surface along with the experimental STM data. Total energy calculations using different schemes for the exchange-correlation energy and STM simulations are compared against experimental data. We find that the symmetry reduction is only reproduced when van der Waals corrections are included into the formalism. It is caused by a deformation along the two perpendicular molecular axes, one of them coming closer to the surface by around 0.2 A?. An electronic structure analysis reveals (i) the relevance of the CoPc interaction with the Cu(111) surface state and (ii) that intramolecular features in dI/dV maps clearly discriminate a Co-derived state from the rest of the Pc states.     

Time-lapse STM studies of diastereomeric cinchona alkaloids on platinum metals

The adsorption of cinchonidine (CD) and cinchonine (CN) on Pt(111) and Pd(111) single crystals has been investigated by means of scanning tunneling microscopy (STM) in an ultrahigh vacuum system. In time-lapse series the mobilities of different adsorption species have been determined on a single molecule basis and with varying hydrogen background pressures in the system. The diastereomeric cinchona alkaloids, CD and CN, which are widely used as chiral modifiers of platinum group metals in catalytic enantioselective hydrogenation, showed similar adsorption modes and diffusion behavior on Pt(111), except that the flatly adsorbed CN molecules which were free (not in a dimer/cluster) were significantly more mobile than their CD analogues. CD adsorbed on Pd(111) showed similar adsorption modes as observed on Pt(111) but at considerably higher mobility of the flatly absorbed species already in the low-pressure region. The observed adsorption behaviors are discussed in the context of independent ATR-IR measurements and theoretical calculations. Special emphasis is put on the nonlinear effect observed in hydrogenation reactions with CD/CN mixtures. Our observations corroborate that this effect is mainly a consequence of the different adsorption strengths of CD and CN on Pt.     

Submolecular imaging of chloronitrobenzene isomers on Cu(111)

We compare computer simulations to experimental scanning tunneling microscopy (STM) images of chloronitrobenzene molecules on a Cu(111) surface. The experiments show that adsorption induced isomerization of the molecules takes place on the surface. Furthermore, not only the submolecular features can be seen in the STM images, but different isomers can also be recognized. The Todorov-Pendry approach to tunneling produces simulated STM images which are in good accordance with the experiments. Alongside with STM simulations in a tight-binding basis, ab initio calculations are performed in order to analyze the symmetry of relevant molecular orbitals and to consider the nature of tunneling channels. Our calculations show that while the orbitals delocalized to the phenyl ring create a relatively transparent tunneling channel, they also almost isolate the orbitals of the substitute groups at energies which are relevant in STM experiments. These features of the electronic structure are the key ingredients of the accurate submolecular observations.     

Sb在Cu单晶电极上欠电位沉积的电化学和现场STM研究

应用循环伏安法和现场扫描隧道显微镜研究了在HClO4和H2SO4两种溶液中Sb于Cu(111)和Cu(100)电极上的欠电位沉积.结果表明,不同的表面原子排列和强吸附阴离子的存在将明显影响Sb的欠电位沉积行为.在结构较为开放的Cu(100)表面,Sb形成的欠电位沉积层结构也较为开放,并且伴随着表面合金的形成;而在密堆积的Cu(111)表面上,Sb形成了致密的单层结构.又当Cu(111)表面存在强吸附的SO42-时,Sb原子首先在SO42-吸附层与Cu表面交接的新台阶处成核,随后通过取代SO42-向上一层晶面发展,表现出独特的成核—生长行为;而在弱吸附的HClO4溶液中,Sb的欠电位沉积系以在晶面上随机形成一些单原子层高度的Sb岛为特征.在Cu(100)表面,通过SO42-的诱导共吸附,欠电位沉积的Sb原子形成了开放性更大的(4×4)结构,不同于在HClO4溶液中所形成的(22×22)R45°结构.     

The reactive chemisorption of alkyl iodides at Cu(110) and Ag(111) surfaces: a combined STM and XPS study

The chemisorption of methyl and phenyl iodide has been studied at Cu(110) and Ag(111) surfaces at 290 K with STM and XPS. At both surfaces dissociative adsorption of both molecules leads to chemisorbed iodine, with the STM showing c(2 x 2) and (square root 3 x square root 3)R30 structures at the Cu(110) and Ag(111) surfaces, respectively. At the Cu(110) surface a comparison of coexisting c(2 x 2) I(a) and p(2 x 1) O(a) domains shows the iodine adatoms to be chemisorbed in hollow sites with evidence at low coverage for diffusion in the (110) direction. In the case of methyl iodide no carbon adsorption is observed at either the silver or the copper surfaces, but chemisorbed phenyl groups are imaged at the Cu(110) surface after exposure to phenyl iodide. The STM images show the phenyl groups as bright features approximately 0.7 nm in diameter and 0.11 nm above the iodine adlayer, reaching a maximum surface concentration after approximately 6 Langmuir exposure. However, the phenyl coverage decreases with subsequent exposures to PhI and is negligible by approximately 1000 L exposure, consistent with the formation and desorption of biphenyl. The adsorbed phenyls are located above hollow sites in the substrate, they are stabilized at the top and bottom of step edges and in paired chains (1.1 nm apart) on the terraces with a regular interphenyl spacing within the chains of 1.0 nm in the (110) direction. The interphenyl ring spacing and diffusion of individual phenyls from within the chains shows that the chains do not consist of biphenyl species but may be a precursor to their formation. Although the XPS data shows carbon present at the Ag(111) surface after exposure to PhI, no features attributable to phenyl groups were observed by STM.     

The initial growth behavior of perylene on Cu(100)

Using scanning tunneling microscopy (STM) together with density functional theory (DFT) the growth behavior of perylene on the Cu(100) substrate has been investigated. As revealed by STM images, perylene molecules prefer to adopt lying configuration with their molecular plane parallel to the substrate, and two symmetrically equivalent ordered domains were observed. DFT calculations show that perylene molecule prefers to adsorb on the top site of substrate Cu atoms with its long molecular axis aligning along the [011] or [01-1] azimuth of the substrate which is the most stable adsorption geometry according to its highest binding energy. Consequently, two adsorption structures of c(8×4) and c(8×6), each containing two perylene molecules per unit cell, are proposed based on our STM images. The growth mechanism for ordered perylene domains on Cu(100) can be attributed to the balance between weak adsorbate-adsorbate interaction and comparable adsorbate-substrate interaction.     

一氧化碳共吸附法确定叔丁胺分子在Cu(111)表面的吸附位

采用扫描隧道显微镜(STM)和密度泛函理论(DFT)研究了78 K时单个叔丁胺分子在Cu(111)表面的吸附位. 我们提出以共吸附的一氧化碳√3 ×√3 超结构为基底铜原子的标识方法, 确定了低覆盖度的叔丁胺分子在Cu(111)表面的吸附位为顶位. 而采用单个一氧化碳分子标识基底铜原子的位置, 同样得出了叔丁胺分子的吸附位为顶位. 此外, 还采用DFT计算叔丁胺分子在Cu(111)表面的优势吸附构型. 理论计算结果表明顶位吸附构型为能量最稳定的构型, 与实验结果相吻合.     

金属-有机配合物分子在Au(111)表面的吸附行为

用STM对含氧桥的金属-有机配合物[Cu₂(μ-O)(dptap)4(NO₃)₂]分子在Au(111)表面的吸附行为进行了研究. STM结果表明, 该分子同时存在非解离吸附和解离吸附, 大部分分子在Au(111)面形成有规则的排列, 少量分子发生解离吸附, 并形成(√3×√3)R30°Cu原子吸附结构. 探讨了两种吸附现象共存的起因.     

Tellurium adatoms as an in-situ surface probe of (111) two-dimensional domains at platinum surfaces

Irreversibly adsorbed tellurium has been studied as a probe to quantify ordered domains in platinum electrodes. The surface redox process of adsorbed tellurium on the Pt(111) electrode and Pt(111) stepped surfaces takes place around 0.85 V in a well-defined peak. The behavior of this redox process on the Pt(111) vicinal surfaces indicates that the tellurium atoms involved in the redox process are only those deposited on the (111) terrace sites. Moreover, the corresponding charge density is proportional to the number of sites on (111) ordered domains (terraces) that are, at least, three atoms wide. Hence, this charge density can be used to measure the number of (111) terrace sites on any given platinum sample. Structural information about tellurium adsorption is obtained from atomic-resolution STM images for the Pt(111) and Pt(10, 10, 9) electrodes. A rectangular structure (2 x radical 3) and a compact hexagonal structure (11 x 8) were identified. However, the redox peak for adsorbed tellurium on (100) domains at 1.03 V overlaps with peaks arising from steps and (110) sites. Therefore, it cannot be used without problems for the determination of (100) sites on a platinum sample. On the (100) terraces, the surface structure of the adsorbed tellurium is c(2 x 2), as revealed by STM. Finally, tellurium irreversible adsorption has been used to estimate the number of (111) ordered domains terrace sites on different polycrystalline platinum samples, and the results are compared to those obtained with bismuth irreversible adsorption.     

Au(111)表面Verdazyl自由基的构象转换

Pure organic radical molecules on metal surfaces are of great significance in exploration of the electron spin behavior. However, only a few of them are investigated in surface studies due to their poor thermal stability. The adsorption and conformational switching of two verdazyl radical molecules, namely, 1, 5-biisopropyl-3-(benzo[b]benzo[4,5]thieno[2, 3-d]thiophen-2-yl)-6-oxoverdazyl (B2P) and 1, 5-biisopropyl-3-(benzo[b]benzo[4,5]thieno[2, 3-d]thiophen-4-yl)-6-oxoverdazyl (B4P), are studied by scanning tunneling microscopy (STM) and density functional theory (DFT). The adsorbed B2P molecules on Au(111) form dimers, trimers and tetramers without any ordered assembly structure in which two distinct appearances of B2P in STM images are observed and assigned to be its "P" and "T" conformations. The "P" conformation molecules appear in the STM image with a large elliptical protrusion and two small ones of equal size, while the "T" ones appear with a large protrusion and two small ones of different size. Likewise, the B4P molecules on Au(111) form dimers at low coverage, strip structure at medium coverage and assembled structure at high coverage which also consists of above-mentioned two conformations. Both B2P molecules and B4P molecules are held together by weak intermolecular interaction rather than chemical bond. STM tip induced conformational switching of both verdayzl radicals is observed at the bias voltage of +2.0 V. The "T" conformation of B2P can be switched to the "P" while the "P" conformation of B4P can be switched to the "T" one. For both molecules, such a conformational switching is irreversible. The DFT calculations with Perdew-Burke-Ernzerhof version exchange-correlation functional are used to optimize the model structure and simulate the STM images. STM images of several possible molecular conformations with different isopropyl orientation and different tilt angle between verdazyl radical and Au(111) surface are simulated. For conformations with different isopropyl orientation, the STM simulated images are similar, while different tilt angles of verdazyl radical lead to significantly different STM simulated images. Combined STM experiments and DFT simulations reveal that the conformational switching originates from the change of tilting angle between the verdazyl radical and Au(111) surface. The tilt angles in "P" and "T" conformations are 0° and 50°, respectively. In this study, two different adsorption conformations of verdazyl radicals on the Au(111) surface are presented and their exact adsorption structures are identified. This study provides a possible way to study the relationship between the electron spin and configuration conversion of pure organic radical molecules and a reference for designing more conformational switchable radical molecules that can be employed as interesting molecular switches.     

Dipole driven bonding schemes of quinonoid zwitterions on surfaces

The permanent dipole of quinonoid zwitterions changes significantly when the molecules adsorb on Ag(111) and Cu(111) surfaces. STM reveals that sub-monolayers of adsorbed molecules can exhibit parallel dipole alignment on Ag(111), in strong contrast with the antiparallel ordering prevailing in the crystalline state and retrieved on Cu(111) surfaces, which minimizes the dipoles electrostatic interaction energy. DFT shows that the rearrangement of electron density upon adsorption is a result of donation from the molecular HOMO to the surface, and back donation to the LUMO with a concomitant charge transfer that effectively reduces the overall charge dipole.     

Conformation Controls Mobility: 2H-Tetranaphthylporphyrins on Cu(111)

The adsorption behavior and the mobility of 2H-Tetranaphthylporphyrin (2HTNP) on Cu(111) was investigated by scanning tunneling microscopy (STM) at room temperature (RT). The molecules adsorb, like the structurally related 2HTPP, in the “inverted” structure with the naphthyl plane restricted to an orientation parallel to the Cu surface. The orientation of the four naphthyl groups yields altogether 16 possible conformations. Due to the existence of rotamer pairs, 10 different appearances are expected on the surface, and all of them are identified by STM at RT. Most interestingly, the orientation of the naphthyl groups significantly influences the diffusion behavior of the molecules on Cu(111). We identify three different groups of conformers, which are either immobile, medium or fast diffusing at RT. The mobility seems to decrease with increasing size of the footprint of the conformers on the surface.     

On the existence of ordered organic adlayers at the Cu(111)/electrolyte interface

We have reinvestigated the behavior of a Cu(111) electrode in pure and cinchonidine containing aqueous 0.1 M HClO4 solution by cyclic voltammetry (CV) and in situ electrochemical scanning tunneling microscopy (STM). In contrast to previous publications by Wan et al. (Langmuir 2000, 19, 1958-1962 and references cited therein) on Cu(111) in pure 0.1 M HClO4 which claimed an adsorbate-free Cu(111) surface in the entire potential range, we have found a highly ordered hexagonal adsorbate structure with a (4 x 4) unit cell, which is stable in the potential range from hydrogen evolution at -350 to -150 mV (RHE). The adsorbate-free (1 x 1) Cu(111) surface is only visible in a fairly small potential range from -150 to +50 mV. A disordered surface structure is formed at more positive potentials which is interpreted by adsorption of an oxygen-containing species. Furthermore, the formation of a highly ordered cinchonidine adlayer on Cu(111) in 0.1 M HClO4 as reported by Wan et al. (J. Am. Chem. Soc. 2002, 124, 14300-14301) could not be reproduced here. In fact, the similarity of all structures reported by Wan et al. for a great variety of different organic adlayers on Cu(111) in HClO4 solution including cinchonidine with the (4 x 4) superstructure found here already in pure HClO4 solution (i.e., without organic solute) casts serious doubts on the validity of those previous results by Wan et al. in general.     

Self-assembly of L-tryptophan on Cu(111) studied by low-temperature scanning tunneling microscopy

The self-assembly of L-tryptophan on Cu(111) is investigated by an ultrahigh vacuum scanning tunneling microscope (STM) at 4.4 K. A series of novel supramolecular structures have been prepared with different annealing temperatures.     

In situ STM imaging of bis-3-sodiumsulfopropyl-disulfide molecules adsorbed on copper film electrodeposited on Pt(111) single crystal electrode

The adsorption of bis-3-sodiumsulfopropyldi-sulfide (SPS) on metal electrodes in chloride-containing media has been intensively studied to unveil its accelerating effect on Cu electrodeposition. Molecular resolution scanning tunneling microscopy (STM) imaging technique was used in this study to explore the adsorption and decomposition of SPS molecules concurring with the electrodeposition of copper on an ordered Pt(111) electrode in 0.1 M HClO(4) + 1 mM Cu(ClO(4))(2) + 1 mM KCl. Depending on the potential of Pt(111), SPS molecules could react, adsorb, and decompose at chloride-capped Cu films. A submonolayer of Cu adatoms classified as the underpotential deposition (UPD) layer at 0.4 V (vs Ag/AgCl) was completely displaced by SPS molecules, possibly occurring via RSSR (SPS) + Cl-Cu-Pt → RS(-)-Pt(+) + RS(-) (MPS) + Cu(2+) + Cl(-), where MPS is 3-mercaptopropanesulfonate. By contrast, at 0.2 V, where a full monolayer of Cu was presumed to be deposited, SPS molecules were adsorbed in local (4 × 4) structures at the lower ends of step ledges. Bulk Cu deposition driven by a small overpotential (η < 50 mV) proceeded slowly to yield an atomically smooth Cu deposit at the very beginning (<5 layers). On a bilayer Cu deposit, the chloride adlayer was still adsorbed to afford SPS admolecules arranged in a unique 1D striped phase. SPS molecules could decompose into MPS upon further Cu deposition, as a (2 × 2)-MPS structure was observed with prolonged in situ STM imaging. It was possible to visualize either SPS admolecules in the upper plane or chloride adlayer sitting underneath upon switching the imaging conditions. Overall, this study established a MPS molecular film adsorbed to the chloride adlayer sitting atop the Cu deposit.     

Self-assembly of l-tryptophan on Cu(111) studied by low-temperature scanning tunneling microscopy

The self-assembly of l-tryptophan on Cu(111) is investigated by an ultrahigh vacuum scanning tunneling microscope (STM) at 4.4 K. When deposited onto the substrate at around 120 K with a coverage of 0.1 monolayer, molecular trimers, tetramers, hexamers, and chains coexist on Cu(111). Then almost all molecules self-assemble into chiral hexamers after being annealed at room temperature. When increasing molecular coverage to the full layer, a new type of chain is observed on the surface. Based on the high-resolution STM images at sub-molecular level, we suggest that the l-tryptophan molecules are present in neutral, zwitterionic or anionic states in these structures.     

A first-principles study of (R)- and (S)-PPA Molecules on Cu(111)

The adsorption of (R)- and (S)-2-phenylpropionamide (PPA, C(9)H(11)ON) molecules on a Cu(111) surface has been investigated using the density functional method with supercell models. The adsorption orientations of both (R)- and (S)-PPA molecules on the surface are the same: the phenyl rings are approximately parallel to the Cu(111) surface and positioned in the hollow sites, the amino and methyl groups occupy two-bridge sites, and the carbonyl occupies the top site. After the adsorption, the bond lengths in the two enantiomers are almost unchanged, but the changes for two dihedral angles show differences, especially for (R)-PPA molecule. The first angles between the (N,C9,C7) plane and the (C9,C7,C6) plane are 19.4 and 0.7 degrees for (R)- and (S)-PPA molecules, respectively, and the second angles between the (C8,C7,C6) plane and the (C7,C6,C5) plane are 74.8 and 0.4 degrees for (R)- and (S)-PPA molecules, respectively. The adsorption energies of (R)- and (S)-PPA molecules are calculated to be -34 and -26 kJ mol(-1), respectively. The simulated scanning tunneling microscopy (STM) images of (R)- and (S)-PPA molecules on the Cu(111) surface display different features and are coincident with the experimental ones. The interaction between the adsorption molecule and the metal surface is found to be responsible for the discrimination of (R)- and (S)-PPA molecules on the surface.