A trans influence study in propyl (aquo)cobaloxime by imidazoles and amino acids

Substitution reactions of propyl cobaloxime with imidazole, substituted imidazoles, histidine, histamine, glycine and ethyl glycine ester are carried out as a function of pH. Trends in the formation constants are explained based on the steric hindrance, extent of π-bonding and Σ-donor capacity of the incoming ligand. Molecular mechanics is used to theoretically determine the bond length and bond strain values by MM2 parametrization and these are correlated with the experimental data.     

Equilibria and kinetics for pH-dependent axial ligation of ethylester and methylester(aquo)cobaloximes with aromatic and aliphatic N-donor ligands and a molecular mechanistic study of the Co-C bond

Equilibrium constants are determined for the reaction of ethylester and methyl ester (aquo) cobaloximes with histamine, histidine, glycine and ethyl glycine ester as a function of pH at 25°C, using spectrophotometric technique. The functional dependence of pK _a on the substitution rate of H₂O varies with the pK _a of the incoming ligand, establishing the existence of nucleophilic participation of the ligand in the transition state. This data is interpreted with the help of kinetic data where dissociation kinetic reactions were also studied as a function of pH. Binding and kinetic data were correlated based on the basicity, steric hindrance of the entering ligand and HSAB principle. To compare the rate constants of the entering ligands pH-independent second-order rate constants were calculated. The effect of incoming ligand on Co-C bond is studied using molecular mechanics     

Equilibria and kinetics for p H-dependent axial ligation of alkyl(aquo) cobaloximes with aromatic and aliphatic N-donor ligands

Equilibria and kinetics of the reaction of bromomethyl(aquo) cobaloxime with histamine, histidine, glycine and ethyl glycine ester and iodomethyl(aquo) cobaloxime with cyanide, imidazole and substituted imidazoles were studied as a function ofpH at 25°C, 10 M ionic strength (KCl) by spectrophotometry technique. The rate of substitution of H₂O varies with thepKa of the incoming ligand, thus establishing the existence of nucleophilic participation of the ligand in the transition state. Dissociation kinetic reactions were also studied as a function ofpH. Binding and kinetic data were interpreted based on the basicity, steric crowd of the entering ligand and HSAB principle. To compare the rate constants of the entering ligandspH independent second-order rate constants were calculated.     

Intramolecular MLOH/π and MLNH/π interactions in crystal structures of metal complexes

Intramolecular metal-ligand OH/π (MLOH/π) and metal-ligand NH/π (MLNH/π) interactions in transition metal complexes between aqua or ammine ligand and ligand containing a C6-aromatic ring were investigated in crystal structures deposited in the Cambridge Structural Database (CSD). These intramolecular interactions appear in 38 structures with aqua ligand as the hydrogen atom donor and in 10 structures with ammine ligand as the hydrogen atom donor. Among all these complexes only one is negatively charged, 14 are positively charged and 33 are neutral indicating that the overall charge of the molecule has an influence on the XH/π (X = O or N) interactions. Energy estimated by DFT calculations is approximately 19 kJ mol⁻¹ for the MLOH/π interactions and approximately 15 kJ mol⁻¹ for the MLNH/π interactions. Dedicated to Professor Milan Melník on the occasion of his 70th birthday     

Equilibrium and kinetic studies on ligand substitution reactions of chloromethyl(aquo)cobaloxime with aromatic and aliphatic N-donor ligands

Equilibria and kinetics of the reactions of chloromethyl(aquo)cobaloxime with histamine, histidine, glycine and ethyl glycine ester were studied as a function of pH at 25°C, 10 M ionic strength (KCl) by spectrophotometric techniques. Comparison of equilibrium constants and rate constants tells that the order isK _Hisdn >K _Hiamn >K _Gly >K _EtGlyest. The rate of substitution of H₂O varies with the pKa of the incoming ligand and nucleophilic participation of the ligand in the transition state. The rate constants and equilibrium constants are correlated to the hardness and softness of the ligands and the Co(III) of cobaloxime.     

The open-close mechanism of M2 channel protein in influenza A virus:A computational study on the hydrogen bonds and cation-π interactions among His37 and Trp41

The M2 protein from influenza A virus is a tetrameric ion channel. It was reported that the permeation of the ion channel is correlated with the hydrogen bond network among His37 residues and the cation-π interactions between His37 and Trp41. In the present study,the hydrogen bonding network of 4-methyl-imidazoles was built to mimic the hydrogen bonds between His37 residues,and the cation-π interactions between 4-methyl-imidazolium and indole systems were selected to represent the interac-tions between His37 and Trp41. Then,quantum chemistry calculations at the MP2/6-311G level were carried out to explore the properties of the hydrogen bonds and the cation-π interactions. The calcula-tion results indicate that the binding strength of the N-H···N hydrogen bond between imidazole rings is up to -6.22 kcal·mol-1,and the binding strength of the strongest cation-π interaction is up to -18.8 kcal·mol-1(T-shaped interaction) or -12.3 kcal·mol-1(parallel stacking interaction). Thus,the calcu-lated binding energies indicate that it is possible to control the permeation of the M2 ion channel through the hydrogen bond network and the cation-π interactions by altering the pH values.     

Kinetics and Mechanism for Hydrolysis of α-Amino Acid Esters in Mixed Ligand Complexes with Zn(II)–Nitrilo-tris(methyl phosphonic Acid)

The kinetics of base hydrolysis of the alanine ethyl ester, in addition to glycine, histidine and methionine methyl esters in the presence of the Zn-NTP complex, were studied in aqueous solution by the pH-potentiometric technique, where NTP denotes the nitrilo-tris(methyl phosphonic acid) ligand. The kinetic data fits assumed that hydrolysis proceeds through formation of a M–OH complex, followed by an intramolecular OH⁻ attack. The effect of an organic solvent on the hydrolysis of coordinated esters was investigated by measuring the rate of hydrolysis in dioxane–water solutions of different compositions at t=25.0 °C and I=0.1 mol⋅dm⁻³. The kinetics of base hydrolysis of the glycine methyl ester was studied at different temperatures. Activation parameters for the base hydrolysis of the complexes were evaluated.     

Equilibrium studies on binary and ternary Cu(II) complexes containing ethylenediaminediacetic acid and a series of O?-O?, N-O? and N-N donor ligands

The formation constants for ternary metal complexes (MLA) where L = ethylenediaminediacetic acid (EDDA), M = Cu(II) and A = glycine, alanine, leucine, serine, threonine, methionine, proline, phenylalanine, tryptophan, histidine, aspartic acid, ethylenediamine, histamine, 2,2′-bipyridyl, 1,10-phenanthroline, imidazole, oxalic acid, malonic acid, pyrocatechol and nitropyrocatechol have been investigated by pH-metric method at 35°C andμ = 0.2 M (KNO₃). With respect to the donor atoms on ligand A, the stabilities of the ternary complexes increase in the order O⁻-O⁻ < N-O⁻≈N-N. The stabilities of the various ternary complexes decrease with the increasing number of carboxylate groups on the ligand in the order ethylenediamine (EN) < ethylenediamine monoacetic acid (EDMA) < EDDA. Various factors influencing the formation and stabilities of ternary complexes are discussed.     

Biomimetic Model of Coenzyme B12: Aquabis(ethane‐1,2‐diamine‐κN,κN′)ethylcobalt(III) – Its Kinetic and Binding Studies with Imidazoles and Amino Acids and Interactions with CT DNA

Pseudo‐first‐order reaction kinetics and binding studies of trans‐[Co(en)₂(Et)H₂O] complex with 1H‐imidazole, substituted 1H‐imidazoles, histidine, histamine, glycine and glycine ethyl ester were investigated by means of spectrophotometric techniques. Equilibrium constants were determined as a function of pH at 25°. Binding and kinetic studies were correlated to basicity and steric hindrance. From the equilibrium data, it was found that the entering nucleophile is participating in the transition state, an I_d mechanism is proposed. The effect of the incoming ligands on the complex was studied by molecular mechanics. The interaction of trans‐[Co(en)₂(Et)H₂O] with CT DNA was studied spectrophotometrically.     

Dimerization and Coordination Properties of Zinc(II)tetra-4-alkoxybenzoyloxiphthalocyanine in Relation to DABCO in <Emphasis Type="Italic">o</Emphasis>-Xylene and Chloroform

For the first time the interactions between zinc(II)tetra-4-alkoxybenzoyloxiphthalocyanine (Zn(4—O—CO—C₆H₄—OC₁₁H₂₃)Pc) and 1,4-diazabicyclo[2.2.2]octane (DABCO) in o-xylene and chloroform have been studied by calorimetric titration and NMR and electron absorption spectroscopic methods. It has been found that in o-xylene at concentrations of Zn(4—O—CO—C₆H₄—OC₁₁H₂₃)Pc higher than 6×10⁻⁴ mol⋅L⁻¹ π–π dimers species are formed (λ _max= 685 nm). Additions of DABCO to the solution up to mole ratio 1 : 8 (Zn(4—O—CO—C₆H₄—OC₁₁H₂₃)Pc : DABCO) lead to a shift of the aggregation equilibrium towards monomer species due to formation of monoligand axial complexes. Further increasing the DABCO concentration results in formation of Zn(4—O—CO—C₆H₄—OC₁₁H₂₃)Pc—DABCO—Zn(4—O—CO—C₆H₄—OC₁₁H₂₃)Pc sandwich dimers (λ _max= 675 nm).     

How π-electron delocalisation reflects replacement of H+ with Li+ in variously substituted malonaldehydes

Correlations were studied between the properties of Bader's ring and bond critical points calculated for variously substituted malonaldehyde (containing intramolecular H-bond) and its π-electron delocalisation expressed by aromaticity indices HOMA and NICSs. It was observed that π-electron delocalisation of the system strongly depends on the substituent and its position. Replacement of the H⁺ with Li⁺ in malonaldehyde allowed us to study the role of unoccupied 2p orbital in π-electron delocalisation. In the case of lithium system the aromaticity is increased as compared with the malonaldehyde itself and moreover with the malonaldehyde anion. This proves that the unoccupied 2p orbital of Li⁺ may play a significant role in delocalisation of π-electrons due to its low orbital energy. In the case of lithium system the substituent effect is negligible, which resembles the situation in benzene derivatives. Dedicated to Prof. Karl Jug on the occasion of his 65th birthday anniversary.     

Study of the spectroscopic characteristics of methyl (ligand) cobaloximes and their antibacterial activity

Spectroscopic characterization (IR, NMR and electronic spectra) of methyl (ligand) cobaloxime was done, where ligand = pyrazole, dimethyl pyrazole, alanine and alanine methyl ester. The frequency changes in the IR spectra and shifts in the NMR were explained on the basis of basicity of the ligand, steric hindrance, HSAB principle and dπ-pπ back-bonding from metal to ligand. Alanine and alanine methyl ester form more stable complexes than pyrazole and dimethyl pyrazole. Based on their IR and ¹H NMR spectra it is inferred that pyrazole and dimethylpyrazole bind to Co (III) via N-2 ring nitrogen, i.e. monodentate coordination.     

Coenzyme B12 model studies: An HSAB approach to the equilibria and kinetics of axial ligation of alkyl(aquo)-cobaloximes by imidazole and cyanide

Kinetics and equilibria of the axial ligation of alkyl(aquo)cobaloximes by imidazole and cyanide have been measured spectrophotometrically in aqueous solutions of ionic strength 1.0 M at 25°C as a function of pH. Comparison of K_IMD and K_CN- of CH₃, C₂H₅ and BrCH₂cobaloximes indicates that their stability is in the order BrCH₂>CH₃>C₂H₂. As the electron-withdrawing capacity of the alkyl grouptrans to water increases, the electron density of the cobalt(III) decreases and thus it becomes a stronger Lewis acid and binds more strongly to imidazole and cyanide. The association and dissociation rate constants are better correlated to the relative softness of the ligand showing that cyanide binds 30 times faster than imidazole. These complexes are isolated and are characterized by IR and¹H NMR spectra.     

Polymer-ligand interaction studies. Part I. Binding of some drugs to poly(N-vinyl-2-pyrrolidone)

A physico-chemical investigation on the binding of some nonsteroidal anti-inflammatory drugs, Naproxen (NP) and Ketoprofen (KP) and a drug model compound, salicylic acid (SA) to poly(N-vinyl-2-pyrrolidone) (PVP, molecular weight = 360,000), was performed at pH 7.1 by the fluorescence competition method employing 1-anilinonaphthalene-8-sulphonate (ANS) as the fluorescent probe. The binding affinities of these substrates to PVP are in the order KP < SA < NP which has been explained on the basis of their structural features and the consequent effect on the interacting forces. Theπ-π interaction between the carbonyl group of PVP and theπ-ring system of the substrate molecule seems to be crucial in deciding the binding affinities of the substrates     

Isotropic NMR Shifts in Imidazole, 2-Methyl Imidazole and n-Methyl Imidazole Complexed with Copper (II) β-Diketonates

Isotropic nuclear magnetic resonance shifts have been measured for imidazole (Im), 2-methyl imidazole (2MeIm) and N-methyl imidazole (NMeIm) adducts with Cu(AA)₂, Cu(TFA), and Cu(HFA)₂, where AA, TFA and HFA are anion of acetylacetone, trifluoroacetylacetone and hexafluoroacetylacetone, respectively, in deuteriochloroform solution. The pseudocontact contribution to the isotropic shifts are negligibly small and Ferrmi contact interaction is dominant in these copper complexes. The normal temperature effect and appreciable spin delocalization suggest that the imidazole and substituted imidazole adducts with Cu(chelate)₂ are all six-coordinated octahedral complexes, and consistent with our results of spectrophotometric study. In these imidazole complexes, the magnitude of the contact shifts lie in the order Cu(HFA)₂>Cu(TFA)₂>Cu(AA)₂, which is the same as that of the stability constants for the pyridine type adduct formation found from spectrophotometric studies. For a given Cu(chelate)₂, the basicity of ligand for adduct formation is in the order NMeIm>Im>2MeIm.     

The conjugation and effective charges of the atoms at the triple bond in germylacetylenes

The integrated extinction coefficients (A) of the C≡C stretching modes in the IR spectra of 12 germylacetylenes Me₃GeC≡CR are determined by the resonance interactions of substituents with the triple bond. TheA ^1/2 values change linearly with change in the difference between the effective π-electron charges on the atoms at the triple bond and σ⁰ _R constants of organic substituents R. The average value of the σ⁰ _R constant of the Me₃Ge substituent in the compounds studied is +0.06. The resonance acceptor effect of the Me₃Ge substituent toward the triple bond (d,π-conjugation) is stronger than the donor effect (σ,π-conjugation). Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1569–1574, August, 1998.     

Solvent Effects on the Protonation Constants of Some <Emphasis Type="Italic">α</Emphasis>-Amino Acid Esters in 1,4-Dioxane–Water Mixtures

The stoichiometric protonation constants of some α-amino acid esters (glycine methyl ester, glycine t-butyl ester, l-valine methyl ester, l-valine ethyl ester, l-valine t-butyl ester, l-serine methyl ester, l-serine ethyl ester, l-leucine methyl ester, l-leucine ethyl ester, l-leucine t-butyl ester, l-alanine methyl ester, l-alanine benzyl ester, l-phenylalanine methyl ester, l-phenylalanine ethyl ester, and l-phenylalanine t-butyl ester) in water and 20%, 40%, and 60% (v/v) 1,4-dioxane–water mixtures have been determined at an ionic strength of 0.10 mol⋅L⁻¹ NaCl and at 25.0±0.1 °C under a nitrogen atmosphere. A potentiometric method was used and the calculation of the protonation constants has been carried out using the BEST computer program. The results were discussed in terms of macroscopic properties of the mixed solvent. The stoichiometric protonation constants were influenced by changes in solvent composition and their variations were discussed in terms of preferential solvation. Also, knowledge the protonation constant of α-amino acid esters will be helpful when determining the microscopic equilibrium constants of their corresponding amino acids.     

Zine Complexes of Cysteine,Histidine, and Derivatives Thereof: Potentiometric determination of their compositions and stabilities

The stabilities of Zn complexes of cysteine and histidine have been determined together with those with those of three derivatives of each n which one of their three donor functions (carboxyl, amino, and mercapto and imidazole, respectively) has been blocked. Using potentionmetric titrations of aqueous solutions, the 1:1 and 1:2 complexes of all for cysteine- and all four histidine-derived ligands are observed among te various species present (ligands, 1:1 and 1:2 complexes, and protonatd derivatives thereof). All cysteine-derived complexes are more stable than the corresponding histidine-derived complexes by 1–2 orders of magnitude for the 1:1 composition and by 1–6 order of magnitude for the 1:2 composition. For the cysteine series, the sequence of stabilities is cysteine > cysteine ethyl ester ? N(α)-acetylcysteine ? SMethylcysteine. For the histidine series, the corresponding sequence is histidine > histidine methyl ester > N,N (imidazole)-dimethylhistidine > N(α)-acetylhistidine. The order of stabilities can be explained by the relative strengths of the Zn–S vs. Zn–N coordination, y charge effects, and by chelate ring sizes.     

Syntheses and crystal structures of cobalt(II) and zinc(II) complexes with 4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate

Abstract Sodium 4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate (1) is synthesized by the sulfonation of 6-hydroxybiochanin A and its structure is characterized by elemental analysis, ¹H-NMR, and IR spectroscopy. It is assembled with cobalt(II) or zinc(II), hexaquacobalt(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (2) and hexaquazinc(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (3) are obtained and characterized by IR spectroscopy. Simultaneously, their three-dimensional structures are determined by single-crystal X-ray analysis. It turns out that 2 and 3 are isomorphous and crystallize in the triclinic crystal system, space group P-1. Hydrophilic regions are defined by O–H···O hydrogen bonds involving the coordinated water molecules, the included water molecules, and sulfonate groups. Aromatic π...π stacking interactions assemble the isoflavone skeletons into columns and these columns formed hydrophobic regions. The sulfonate group is an important bridge as a structural link between the hydrophilic regions and the hydrophobic regions. Hydrogen bonds, π...π stacking interactions and the electrostatic interactions assemble 2 and 3 into three-dimensional network structures. Graphical abstract Sodium 4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate (1) is synthesized and assembled with cobalt(II) or zinc(II). Hexaquacobalt(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (2) and hexaquazinc(II) bis(4′-methoxy-5,6,7-trihydroxyisoflavone-3′-sulfonate) tetrahydrate (3) are obtained and determined by single-crystal X-ray analysis. It turns out that 2 and 3 are isomorphous and assembled into three-dimensional network structures, characterized by hydrophilic regions defined by hydrogen bonds involving the coordinated water molecules, the included water molecules, and the sulfonate groups and by hydrophobic columns, formed by the isoflavone skeletons, interacting through π...π stacking interactions.