Synthesis of l-α-phosphatidyl-d-myo-inositol 3,5-bisphosphate from d-glucose

Efficient synthesis of l-α-phosphatidyl-d-myo-inositol 3,5-bisphosphate was achieved from 1,2,5,6-diisopropylidene-d-glucose by utilizing ring-closing metathesis and catalytic OsO₄ dihydroxylation.     

Separation and determination of l-tyrosine and its metabolites by capillary zone electrophoresis with a wall-jet amperometric detection

A method of capillary electrophoresis with wall-jet amperometric detection (AD) has been developed for separation and determination of l-tyrosine (Tyr) and its metabolites, such as Tyramine (TA), p-hydroxyphenylpyruvic (pHPP), homogentisic acid (HGA) and some dipeptides containing Tyr, such as Tyr-Gly-Gly (YGG), Tyr-Arg (YR) and Tyr-d-Arg (Y-d-R). A carbon disk electrode was used as the working electrode and the optimal detection potential was 1.00 V (versus Ag/AgCl). At 18 kV of applied voltage, the seven compounds were completely separated within 20 min in 110 × 10⁻³ mol/L Na₂HPO₄–NaH₂PO₄ buffer (pH 7.10) containing 3 × 10⁻³ mol/L β-cyclodextrin (β-CD). Good linear relationship was obtained for all analytes and the detection limits of seven analytes were in the range of 0.95–4.25 ng/mL. The proposed method has been applied to examine the metabolic process of l-tyrosine in rabbit's urine.     

Stereo-controlled approach to pyrrolidine iminosugar C-glycosides and 1,4-dideoxy-1,4-imino-l-allitol using a d-mannose-derived cyclic nitrone

Intramolecular N-alkylation of 2,3-O-isopropylidene-5-O-methanesulfonyl-6-O-t-butyldimethylsilyl-d-mannofuranose-oxime 7 afforded a five-membered cyclic nitrone 9, which on N–O bond reductive cleavage followed by deprotection of –OTBS and acetonide functionalities gave 1,4-dideoxy-1,4-imino-l-allitol (DIA) 3. Addition of allylmagnesium chloride to nitrone 9 afforded α-allylated product 10a in high diastereoselectivity providing an easy entry to N-hydroxy-C1-α-allyl-substituted pyrrolidine iminosugar 4a after removal of protecting group, while N–O bond reductive cleavage in 10a afforded C1-α-allyl-pyrrolidine iminosugar 4b.     

Synthesis of tadalafil (Cialis) from l-tryptophan

The first synthesis of tadalafil 1 (Cialis) from l-tryptophan is described. The title compound 1 was synthesized via seven steps from l-tryptophan methyl ester hydrochloride in 42.3% overall yield. Two characteristic steps involved in this synthesis are the base-catalyzed epimerization of the C-3 position of (1S,3S)-1,2,3-trisubstituted-tetrahydro-β-carboline 3a and the acid-catalyzed epimerization of the C-1 position of (1S,3R)-1,3-disubstituted-tetrahydro-β-carboline 5. The (S)-configurations at C-1 and C-3 were inverted to (R)-configurations during the epimerization reactions. The base-catalyzed epimerization of C-3 of (1S,3S)-1,2,3-trisubstituted-tetrahydro-β-carbolines 3a–3e was also studied in detail.     

Intermolecular/interionic interactions in l-isoleucine-, l-proline-, and l-glutamine-aqueous electrolyte systems

Speed of sound and density values for ternary systems (amino acid + salt + water): l-isoleucine/l-proline/l-glutamine in aqueous solutions of 1.5 M KCl, 1 M KNO₃, and 0.5 M K₂SO₄ have been measured for several concentrations of amino acids at different temperatures (303.15, 308.15, 313.15, 318.15, and 323.15 K). Using speed of sound and density data, the thermodynamic parameters such as isentropic compressibility (κ_s), change in isentropic compressibility (Δκ_s) and relative change (Δκ_s/κ₀) in isentropic compressibility have been computed. The isentropic compressibility values decrease with increase in the amino acid concentration as well as with temperature. The decrease in κ_s values with increase in concentration of l-isoleucine/l-proline/l-glutamine in 1.5 M KCl, 1 M KNO₃, and 0.5 M K₂SO₄ has been ascribed to an increase in the number of incompressible zwitterions in solutions, and the formation of ‘zwitterions-ions’ and ‘zwitterions-water dipole’ entities in solutions. The decrease in κ_s values with increase in temperature has been attributed to the corresponding decrease of κ_relax (a relaxational part of compressibility), which is dominant over the corresponding increase of κ_∞ (an instantaneous part of compressibility). The trends of variation of Δκ_s and Δκ_s/κ₀ with variations in solute concentration and temperature have also been discussed in terms of solute-solute and solute-solvent intermolecular/interionic interactions operative in the systems.     

DNA binding and oxidative cleavage activity of ternary (l-proline)copper(II) complexes of heterocyclic bases

Ternary copper(II) complexes [Cu(l-pro)(B)(H₂O)](NO₃) (1, 2) where l-pro = l-proline, B is a N,N-donor heterocyclic base, viz. 2,2′-bipyridine (bpy, 1), 1,10-phenanthroline (phen, 2), are synthesized, characterized, and their DNA binding and cleavage activity studied. The bpy complex (1) is structurally characterized by single-crystal X-ray crystallography. The complexes show the presence of a distorted square-pyramidal (4 + 1) CuN₃O₂ coordination geometry. Complex [Cu(l-pro)(bpy)(H₂O)](NO₃) (1) crystallizes in the triclinic space group P1 with unit cell parameters: a = 7.082(3) Å, b = 10.483(5) Å, c = 11.581(5) Å, α = 89.700(7)°, β = 83.488(8)°, γ = 84.109(8)° and V = 849.7(7) Å³. The one-electron paramagnetic complexes display a d–d band near 600 nm in water and show a cyclic voltammetric response due to Cu(II)/Cu(I) couple near 0.1 V (versus SCE) in Tris–HCl buffer–0.1 M KCl. Binding interactions of the complexes with calf thymus (CT) DNA have been investigated by emission, absorption, viscosity and DNA thermal denaturation studies. The phen complex displays significant binding propensity to the CT DNA giving an order: 2 (phen)  1 (bpy). The bpy complex does not show any apparent binding to the DNA and hence poor cleavage efficiency. Complex 2 shows efficient oxidative cleavage of SC-DNA in the presence of 3-mercaptopropionic acid (MPA) involving hydroxyl radical species as evidenced from the control data showing inhibition of DNA cleavage in the presence of DMSO and catalase.     

Syntheses of l-glucosamine donors for 1,2-trans-glycosylation reactions

Two new l-glucosamine donors, that is pent-4-enyl 3,4,6-tri-O-acetyl-2-allyloxycarbonylamino-2-deoxy-β-l-glucopyranoside 16 and ethyl 3,4,6-tri-O-acetyl-2-allyloxycarbonylamino-2-deoxy-1-thio-β-l-glucopyranoside 21 were prepared in 12 steps from l-arabinose. The reaction pathway uses 3,4,6-tri-O-acetyl-l-glucal 5, and then 3,4,6-tri-O-acetyl-2-deoxy-2-iodo-α-l-mannopyranosyl azide 8 as intermediates. The latter, together with donors 16 and 21, were used for preparing l-glucosamine neoglycolipids.     

Cyclic oligomers (macroaldonolactones) from a protected d-galactonic acid monomer

Dicyclohexylcarbodiimide-promoted self-condensation of 2,3:4,5-di-O-isopropylidene-d-galactonic acid (3) led to the macrocyclic oligomeric cyclo[(2,3:4,5-di-O-isopropylidene-(1→6)-d-galactonate)₂] (4) and cyclo[(2,3:4,5-di-O-isopropylidene-(1→6)-d-galactonate)₃] (5), having, respectively, 14- and 21-membered rings. The macrocycles 4 and 5 were also synthesized by cyclization of the respective linear dimer 11 and trimer 14 ω-hydroxy acids precursors prepared by stepwise additions of 3. Compounds 4 and 5 are biomaterials that may be described as macrolactone-cyclodextrins.     

Carbon- and nitrogen-centered radicals produced from l-lysine by radiation-induced oxidation: A pulse radiolysis study

Radical species generated from the reactions of a basic amino acid, l-lysine (Lys), with hydroxyl radicals (OH) and sulfate radical anion () have been detected by the method of pulse radiolysis. On the basis of electron transfer reactivities toward tetranitromethane (TNM), it was demonstrated that reducing carbon-centered radicals are generated as a result of hydrogen abstraction from CH₂ of Lys with a G-value of 1.9 × 10⁻⁷ mol J⁻¹. On the other hand, direct oxidation of l-Lys by formed a transient species with different spectroscopic properties, most likely, the ε-N-centered Lys radical.     

Syntheses and structural comparisons of two copper(II) complexes with the same formula having d-(+)- and d,l-1,2,2-trimethylcyclopentane-1,3-diamine ligands

Two five-coordinate copper(II) complexes, formulated as [Cu(L_a)₂Cl]BF₄ (1) and [Cu(L_b)₂Cl]BF₄ (2) having d-(+)-1,2,2-trimethylcyclopentane-1,3-diamine (L_a) and d,l-1,2,2-trimethylcyclopentane-1,3-diamine (L_b) ligands, have been synthesized and characterized. X-ray diffraction studies of 1 and 2 demonstrate that they crystallize in the different space groups (P2₁2₁2₁ for 1 and Pnma for 2), although they have identical unit cell volumes, due to the use of enantiomeric and racemic diamine ligands. One dimensional (1D) hydrogen-bond-sustained dimeric zigzag chains are formed by means of eight-membered N₂H₂CuBF₂ as well as 10-membered N₂H₄ClBF₂ hydrogen-bonded cycles. Thermal analyses for 1 and 2 are also described herein.     

Synthesis and characterization of a new organic nonlinear optical crystal: l-Phenylalaninium maleate

l-Phenylalaninium maleate (abbreviated as LPM) chemical formula C₉H₁₂NO₂⁺·C₄H₃O₄⁻, a new organic nonlinear optical crystal was grown by slow evaporation technique. Transparent needle shaped crystal of dimensions 7 mm × 1 mm × 0.5 mm was obtained. Single crystals of LPM have been subjected to X-ray diffraction analysis to estimate the lattice parameters and the space group. The powder X-ray diffractogram of the crystal has been recorded and the reflections from various planes are identified. The XRD studies confirm the crystalline nature. The qualitative analysis on the crystal has been carried out using Fourier transform infrared (FTIR) and Fourier transform Raman (FTRaman) spectral measurements. The presence of hydrogen and carbon in the grown crystal was confirmed by using proton and carbon nuclear magnetic resonance (NMR) spectral analyses. Optical behaviour of the crystal was investigated using UV–vis spectroscopy. The thermal stability of the crystal was analysed with the aid of thermogravimetric analysis (TGA) and differential scanning calorimetry (DSC). The nonlinear optical (NLO) property of the crystal was tested by Nd:YAG laser source.     

Benzamidinium d-glucuronate: Spectroscopic and structural elucidation

Benzamidinium d-glucuronate (1) crystallizes in the orthorhombic space group P2₁2₁2₁ and exhibits a 3 D network with molecules linked by moderate intermolecular hydrogen bonds (HNH…O_(solvent) 2.993 Å, HNH…OCO 2.894 Å, HNH…O_(cycle) 2.844 Å, OH…NH₂ 2.931 Å, OH…O_(solvent) 2.894, 2.924 and 2.715 Å (stronger)) with participation of cations, anions and solvent molecules. The IR-band assignment of carbohydrate moieties is elucidated by a comparison between the types and bond lengths of intermolecular interactions with participation of OH groups in d-glucuronate and linear polarized IR-(IR-LD) spectroscopic data. Experimental results are supported by theoretical ab initio calculations of benzamidinium cation and d-glucuronate anion.     

Glycine and l-glutamic acid-based dendritic gelators

Novel dendrons based on glycine and l-glutamic acid from the first generation (G1) to the third generation (G3) were synthesized and studied for their gelation properties by using transmission electron microscopy (TEM), atomic force microscopy (AFM), fluorescence, IR, circular dichroism (CD), and ¹H NMR spectroscopy. It was found that the gelation capability of these dendrons increased from the first generation (G1) to the third generation (G3), and that G3 exhibited the highest efficiency in forming gels. Both the focal and peripheral groups of dendrons had great effects on the formation of organogels. Hydrogen bonding and π-π stacking interactions were proved to be the main driving forces to form the fibrous networks at low concentrations (0.5 wt %). Small-angle X-ray scattering (SAXS) and wide-angle X-ray diffraction (WAXD) measurements indicate that the xerogels of the second generation (G2) from ethyl acetate and ethanol, and G3 xerogel from CH₂Cl₂ all display lamellar structures with the interlamellar spacing of ca. 36.0 Å for G2 and 40.5 Å for G3, respectively.     

EPR and optical absorption studies of Cr ions in d-gluconic acid monohydrate

EPR studies are carried out on Cr³⁺ ions doped in d-gluconic acid monohydrate (C₆H₁₂O₇·H₂O) single crystals at 77 K. From the observed EPR spectra, the spin Hamiltonian parameters g, |D| and |E| are measured to be 1.9919, 349 (×10⁻⁴) cm⁻¹ and 113 (×10⁻⁴) cm⁻¹, respectively. The optical absorption of the crystal is also studied at room temperature. From the observed band positions, the cubic crystal field splitting parameter Dq (2052 cm⁻¹) and the Racah interelectronic repulsion parameter B (653 cm⁻¹) are evaluated. From the correlation of EPR and optical data the nature of bonding of Cr³⁺ ion with its ligands is discussed.     

Synthesis and catalytic properties in olefin epoxidation of dioxomolybdenum(vi) complexes bearing a bidentate or tetradentate salen-type ligand

The monomeric cis-dioxomolybdenum(VI) complexes [MoO₂(oep-saldpen)] and [MoO₂Cl₂(oep-H₂saldpen)], with a tetradentate [N₂(imine)O₂] and bidentate [N₂(imine)] salen-type ligand functionalised with two pyrrole derivative pendant arms [oep-H₂saldpen = 1,2-diphenylethylenebis(3-oxyethylpyrrole)salicylideneimine], were synthesised and characterised by ¹H NMR, IR and Raman spectroscopy. The solid-state structure of the free ligand oep-H₂saldpen was determined by single crystal X-ray diffraction. Assignment of the vibrational spectra of the molybdenum complexes was supported by carrying out ab initio calculations for the possible isomers using [MoO₂(salen)] and [MoO₂Cl₂(H₂salen)] as model compounds [H₂salen = N,N′-ethylenebis(salicylideneimine)]. The oep-saldpen complexes were examined as catalysts for the epoxidation of cyclooctene, (R)-(+)-limonene, styrene, α-pinene, and cis and trans-β-methylstyrene, with tert-butyl hydroperoxide as the oxidant. Both complexes exhibited high selectivity for the epoxidation reaction, with the bis(chloro) complex being always the more active of the two.     

Intermolecular/interionic interactions in l-leucine-, l-asparagine-, and glycylglycine-aqueous electrolyte systems

Ultrasonic velocity and density values have been measured for ternary systems (amino acid/di-peptide + salt + water): l-leucine/l-asparagine/glycylglycine each in 1.5 M aqueous solutions of NaCl or NaNO₃ or KNO₃ used as solvents for several concentrations of amino acids/di-peptide at different temperatures in the range of 298.15-323.15 K. The ultrasonic velocity values have been found to increase with increase in amino acids/di-peptide concentration and temperature in all the systems. The increase in ultrasonic velocity with increase in concentration has been discussed in terms of electrostatic interactions occurring between terminal groups of zwitterions (NH₄⁺ and COO⁻) and Na⁺, K⁺, Cl⁻, NO₃⁻ ions. The interactions of water dipoles with cations/anions and with zwitterions have also been taken into consideration. It has been observed that the ion-zwitterion and ion-dipole attractive forces are stronger than those of ion-hydrophobic repulsive forces. These interactions comprehensively introduce the cohesion into solutions under investigation. The cohesive forces are further enhanced on successive increases in solute concentration. Using ultrasonic velocity and density data, the parameters such as isentropic compressibility (κ_s), change (Δκ_s) and relative change (Δκ_s/κ₀) in isentropic compressibility, specific acoustic impedance (Z) and relative association (RA) have been computed. The isentropic compressibility values decrease with increase in the concentration of solutes as well as with temperature. The decrease in κ_s values with increase in concentration of l-leucine, l-asparagine and glycylglycine in 1.5 M aqueous solutions of NaCl, NaNO₃ and KNO₃ have been explained in terms of an increase in the number of incompressible molecules/zwitterions in solutions and the formation of compact zwitterions-water dipole and zwitterions-ions structures in solutions. The decrease in κ_s values with increase in temperature has been attributed to the corresponding decrease of κ_relax. (relaxational part of compressibility)_, which is dominant over the corresponding increase of κ_∞ (instantaneous part of compressibility). The trends of variations of Δκ_s, Δκ_s/κ₀, Z and RA with change of concentration and temperature have also been interpreted in terms of various intermolecular/interionic interactions existing in the systems.     

Association of model peptides and dehydropeptides: N-acetyl-l-alanine- and dehydroalanine N′,N′-dimethylamides

The comparative studies on the association of Ac-ΔAla-NMe₂ and Ac-l-Ala-NMe₂ in carbon tetrachloride were performed by the analysis of their average molecular weight, dipole moments and FTIR spectra. To aid spectroscopic interpretation and gain some deeper insight into the nature of associates, the geometries of the minimum energy of the dimers of Ac-ΔAla-NMe₂ and Ac-l-Ala-NMe₂ were calculated by the B3LYP/6-31+G** method. The average molecular weight in the studied concentration range, for the ΔAla and l-Ala peptide, as determined by the osmometric method, did not exceed 1.5 and 1.2 of the monomeric mass, respectively. Accordingly, the percentage of the monomeric form (α) decreased as concentration was increased more significantly for the ΔAla analogue than for its saturated counterpart. In the studied concentrations, the dipole moment of the unsaturated compound decreases and that of its counterpart is almost constant. We identified a wider range of dimeric forms of Ac-ΔAla-NMe₂ than those of Ac-l-Ala-NMe₂. While Ac-ΔAla-NMe₂ mainly forms cyclic dimers, built of open conformers H/F, specific for α,β-dehydroamino acids, Ac-l-Ala-NMe₂ forms cyclic and linear dimers, characteristic for the usual amino acids. Ac-ΔAla-NMe₂ has a greater tendency to associate than its saturated variant, which is the result of stronger hydrogen bonds.     

High-pressure Raman spectra of l-histidine hydrochloride monohydrate crystal

Single-crystals of l-histidine hydrochloride monohydrate, C₆H₉N₃O₂·HCl·H₂O, were studied by Raman spectroscopy as a function of pressure in a diamond anvil cell up to 7.5 GPa at room temperature over the spectral range 3450-30 cm⁻¹. The effect of changing pressure on the vibrational spectrum is discussed. From the analysis of results we inferred that the crystal undergoes a reversible structural phase transition between 2.7 and 3.1 GPa. This transition is characterized by the splitting of a band related to torsion of CO₂⁻, the disappearance and appearance of modes related with stretching of OH⁻ and deformation of CO₂⁻, as well as with bands of low wavenumber which are assigned as lattice modes, and by the discontinuities of the curves of wavenumber versus pressure. Pressure coefficients for all modes observed in this work are also given.     

Crystallographic and theoretical study of phenyl 2,3,4,6-tetra-O-acetyl-1-thio-α-D-mannopyranoside

The thiomannoside is a key intermediate in the synthesis of polymannosaccharide. But its crystallographic study has not been reported. X-ray crystal structure analysis shows that the crystal of phenyl 2,3,4,6-tetra-O-acetyl-1-thio-α-D-mannopyranoside is in orthorhombic system, has P2₁2₁2₁ space group. Its unit cell dimensions are a=9.1731(11), b=11.574(2), and c=21.199(3) Å, α=β=γ=90.00°, Z=4, V=2250.6(6) ų, D_c=1.300 g/cm³. The crystallographic study reveals that the thiomannoside is an α-anomer. Most interestingly, the structure provides an evidence of existing C–HO and C–HS intramolecular and intermolecular hydrogen bonds.     

Rapid controlled hydrolytic degradation of poly(l-lactic acid) by blending with poly(aspartic acid-co-l-lactide)

Although poly(lactic acid) is known as a biodegradable polymer, its hydrolytic degradation is extremely slow, taking years in water and in the human body. In this study the effects of blending oligomeric poly(aspartic acid-co-lactide) (PALs) on the hydrolytic degradation of poly(l-lactic acid) (PLLA) were studied in detail. It was found that the addition of PAL did not accelerate the hydrolysis of the PLLA in air (25 °C, 60% relative humidity), but significantly accelerated it in a phosphate buffer solution. The degradation rate becomes higher for the blends containing PAL with higher molar ratios of lactide to aspartic acid units, [LA]/[Asp], when PLLA/PAL blends prepared with different PALs are compared at the same PAL concentration. TEM results, in which the distribution of PALs with higher [LA]/[Asp] occurs at a smaller scale in blends, imply that higher miscibility of the PAL with PLLA results in higher contact area between the components, thereby accelerating the degradation efficiently.