Simulation of chromatography of phenolic compounds with a computational chemical method

An ab initio simulation of reversed-phase liquid chromatography for phenolic compounds was achieved based on molecular interaction energy values calculated using molecular mechanics calculations (MM2) of the CAChe program. The precision of the predicted retention factors from the molecular interaction energy values was equivalent to the predicted retention factors based on octanol-water partition coefficients (log P) calculated using the molecular orbital package (MOPAC). The prediction of retention factors of phenolic compounds in reversed-phase liquid chromatography in a given pH eluent was possible using the predicted dissociation constant (pKa) from the atomic partial charge without a chemical experiment if the organic modifier effect was known.     

Chromatography in silico, quantitative analysis of retention of aromatic acid derivatives

A quantitative analysis of the retention of aromatic acid derivatives in reversed-phase liquid chromatography (RPLC) is conducted using a molecular mechanics calculation in the CAChe program. The molecular interaction energy value is calculated by subtracting the energy value of the complex from the sum of energy values of a model phase and an analyte. Several model phases are constructed, and the feasibility of applying the method to a variety of compounds is examined based on improving the contact surface area and the capability of computer software and hardware. Interaction energy values are calculated for both molecular and ionic forms. The predicted retention factors of partially ionized acids obtained using a combination of dissociation constants correlated well with the values measured by RPLC with pH-controlled eluents.     

Computational chemical analysis of the retention of acidic drugs on a pentyl-bonded silica gel in reversed-phase liquid chromatography

A fast method to obtain a quantitative structure-retention relationship is required in chromatography for the rapid optimization of chromatographic separation conditions. Chromatographic data of acidic drugs are analyzed by a computational chemical method to simulate chromatographic simulation. The direct interaction between a model phase and a drug is calculated as an energy value using the molecular mechanics calculation of CAChe. Computational chemistry using a model adsorbent is a new method for quantitative analysis of retention in reversed-phase liquid chromatography. The correlation coefficient is 0.878 (n = 19) between the retention factors of acidic drugs and interaction energy values of the final structure (DeltaFS) between an acidic drug and model pentyl-bonded phase.     

Chromatographic separation and molecular modelling of triazines with respect to their inhibition of the growth of L1210/R71 cells.

The potential anti-cancer activity of triazines was characterized by the inhibition of the growth of L1210/R71 cells. The retention times for fifteen triazine derivatives were measured by high-performance liquid chromatography on octyl silica and silica gel columns. The slope and intercept values of the plot of the logarithmic capacity factor versus acetonitrile concentration were calculated from the reversed-phase retention measurements. The adsorption properties of the compounds were characterized by the retention data obtained on silica gel columns using high and low concentrations of ammonium salts in the hydro-organic mobile phase. The non-polar, non-polar unsaturated and polar surface areas, the surface energies, the dipole moments and the Van der Waals radii of the molecules were calculated from their chemical structures after energy minimization on the basis of molecular mechanics. Correlation analysis of these parameters showed that the inhibitory effect is dependent on the polar and non-polar surface areas of the molecules. The reversed-phase slope showed a significant correlation with the difference between the accessible and the total non-polar surface areas of the compounds, whereas the intercept values correlated with the non-polar accessible surface area. The adsorption properties of the triazines on silica gel cannot be described by the molecular parameters investigated here.     

Molecular parameters and retention characteristics of unsubstituted polyaromatic hydrocarbons in HPLC

Summary The present research studies the possibility of using the correlation dependence between molecular parameters of unsubstituted polyaromatic hydrocarbons (PAH) and their retention in reversed-phase liquid chromatography to optimize the conditions for the separation and identification of unknown peaks on the chromatograms of multicomponent mixtures. A linear correlation equation, that takes the number and environment of the carbon atom in the PAH molecule into account as well as the differences in the specific interactions of isomeric molecules with polar eluent, has been proposed. The adequacy of the proposed PAH retention model was verified by comparing the calculated retention values with the experimental data. The possibility of identifying unsubstituted PAH according to the number of carbon atoms of various types and according to the values of the molecules lengths (calculated on the basis of the retention of these substances under different eluent compositions) was exemplified by various chromatographic systems (reversed phase-eluent-PAH molecules).     

Prediction of human serum albumin-drug binding affinity without albumin

A new liquid chromatographic system was developed to measure protein-drug binding affinity indirectly without albumin and was evaluated using log nK values of drugs measured by a modified Hummel-Dreyer method using purified human serum albumin. The retention factors of acidic and basic drugs were measured by reversed-phase and ion-exchange liquid chromatography in sodium phosphate buffer, pH 7.40, containing 50 vol.% methanol at 37 °C. The bonded phases were pentyl, guanidino and carboxyl phases. The combined retention factors were correlated with the log nK values measured by a modified Hummel-Dreyer method because glycosylation of human serum albumin did not significantly affect log nK value. The correlation coefficients were 0.949 (n=7) for acidic drugs and 0.978 (n=5) for basic drugs. The log nK values of 26 acidic and 18 basic drugs were predicted from their retention factors measured by reversed-phase and ion-exchange liquid chromatography.     

Analysis of urine by liquid chromatography in the ion-exchange or hydrophobic mode

The analysis of ultraviolet-absorbing constituents in urine was undertaken by anion-exchange and reversed-phase liquid chromatography. A newly developed anion exchanger (TSK-IEX540 DEAE) was used for ion-exchange mode liquid chromatography and its high polarity and physical strength greatly reduced the analysis time. Up to 80 peaks were resolved within 30 min. Hydrophobicity values were used to predict the retention times of acids in reversed-phase mode liquid chromatography.     

Quantitative structure-retention relationships of phenolic compounds without Hammett's equations

Retention times of phenolic compounds in a given pH eluent in reversed-phase liquid chromatography were predicted from dissociation constants derived from atomic partial charges and log P-values calculated by a computational chemical method. The precision of the calculation of atomic partial charges by AMI and PM3 methods of MOPAC was evaluated. The atomic partial charges obtained by AMI were the more acceptable. The atomic partial charges obtained from the hydrogen of the hydroxyl group included an ortho-effect, therefore an ortho-effect was added to the predicted values. The precision of predicted retention factors obtained using predicted pKa values was similar to that using reference pKa values.     

Optimization of HPLC Analysis of Biogenic Amines with Reference to Molecular Structure

Abstract

The selectivity and molecular connectivity indices (x) up to the sixth order were calculated and compared with measured reversed-phase high pressure liquid chromatographic (HPLC) retention data for biogenic amines common in foodstuffs and animal feed. The separation of seventeen dansylated amines including primary, secondary and polyamines, was investigated using an isoselective multisolvent gradient (IMGE), reversed-phase HPLC method. The mobile phase was optimized with the “PRISMA” model testing thirteen selectivity points. The compounds were divided into two groups according to their retention; the low-order valence level indices best described the retention. As the high correlations between the calculated and observed retention indicate, retention could be predicted in different selectivity points with a high degree of accuracy by the molecular connectivity indices.     

Substituent interaction effects in aromatic molecules in RP-HPLC with acetonitrile-water and tetrahydrofuran-water eluents

Summary Retention volumes of monosubstituted benzenes, benzoic acids, phenols and anilines have been measured in reversed-phase liquid chromatography. Buffered acetonitrile-water and tetrahydrofuran-water eluents were used with an octadecylsilylsilica adsorbent. From the net retention volumes a substituent interaction effect was calculated and described with the linear free energy relationship developed by Taft. The positive sign of the values of the -parameters, figuring in this relationship, was interpreted in terms of hydrogen bonding between the solutes and the eluent.     

Influence of mobile phase composition on surface diffusion in reversed-phase liquid chromatography

Influence of column temperature and mobile phase composition (phi) on surface diffusion was studied in reversed-phase liquid chromatography using a C(18)-silica gel column and methanol-water mixtures. The temperature dependence of surface diffusion coefficient (D(s)) was explained by considering that of the molecular diffusivity, suggesting the presence of a kind of correlation between surface and molecular diffusions. The influence of phi on D(s) was accounted for by considering the restriction energy (E(r)) for surface diffusion. Physical meanings of the linear correlation between E(r) and the enthalpy change due to sample retention are discussed in connection with the mechanism of surface diffusion.     

Investigation of the effect of pressure on retention of small molecules using reversed-phase ultra-high-pressure liquid chromatography

The effect of inlet pressure on the retention of a series of low molecular weight acids, bases and neutrals, was investigated at constant temperature in reversed-phase liquid chromatography using a commercial ultra-high-pressure system (Waters UPLC instrument). For neutral compounds, relatively small increases in retention factor of up to approximately 12% for a pressure increase of 500bar were noted; the largest values were obtained for polar solutes, or solutes of higher molecular weight. Ionisable acids and bases gave much larger increases in retention with pressure, in some cases as high as 50% for a pressure increase of 500bar. Thus, such compounds could show increases in retention factor approaching 100% over the pressure range available in the commercial UPLC instrument. Due to these differential increases, significant selectivity effects can be obtained for mixtures of different types of solute merely by changing the pressure.     

Extrathermodynamic interpretation of retention equilibria in reversed-phase liquid chromatography using octadecylsilyl-silica gels bonded to C1 and C18 ligands of different densities

The retention behavior on silica gels bonded to C18 and C1 alkyl ligands of different densities was studied in reversed-phase liquid chromatography (RPLC) from the viewpoints of two extrathermodynamic relationships, enthalpy-entropy compensation (EEC) and linear free energy relationship (LFER). First, the four tests proposed by Krug et al. were applied to the values of the retention equilibrium constants (K) normalized by the alkyl ligand density. These tests showed that a real EEC of the retention equilibrium originates from substantial physico-chemical effects. Second, we derived a new model based on the EEC to explain the LFER between the retention equilibria under different RPLC conditions. The new model indicates how the slope and intercept of the LFER are correlated to the compensation temperatures derived from the EEC analyses and to several parameters characterizing the molecular contributions to the changes in enthalpy and entropy. Finally, we calculated K under various RPLC conditions from only one original experimental K datum by assuming that the contributions of the C18 and C1 ligands to K are additive and that their contributions are proportional to the density of each ligand. The estimated K values are in agreement with the corresponding experimental data, demonstrating that our model is useful to explain the variations of K due to changes in the RPLC conditions.     

Reversed-phase liquid chromatography-mass spectrometry of some organic tellurium compounds

The chromatographic behavior of some organic tellurium compounds (OTCs) was studied under the conditions of high-performance liquid chromatography with mass spectrometric detection. The retention characteristics (retention factor, relative retention, and differential molar Gibbs energy difference) of the compounds were obtained under the conditions of gradient elution reversed-phase liquid chromatography. The chemical ionization mass spectra of OTCs at atmospheric pressure were considered. It was shown that there was a relation between the structure of the compounds studied and their chromatographic retention.     

Retention prediction of phenylthiohydantoin amino acid derivatives in reversed-phase liquid chromatography

Summary The concept of retention prediction for the separation of phenylthiohydatoin-amino acid derivatives in isocratic reversed-phase liquid chromatography is described. A novel retention-solubility parameter, R, is defined, for the retention prediction strategy and the performance of this R value is evaluated by comparing measured and predicted retention data. Excellent agreement between these values were observed. It is concluded that the R value has a very high potential in describing the retention of phenylthiohydantopinamino acid derivatives withdifferent types of separation systems consisting of C-18, C-8 and phenethyl bonded stationary phases and various mobile phases.     

Determination of lipophilicity for antitumor acridinone derivatives supported by gradient high-performance liquid chromatography method

The lipophilicity values of selected acridinone (imidazoacridinone and triazoloacridinone) derivatives were measured by gradient reversed-phase high-performance liquid chromatography (RP-HPLC) using a C18 stationary phase with a water/acetonitrile mixture as a mobile phase. The retention times obtained served as input data and appropriate log k_w values (i.e., the retention factor log k_w extrapolated to 0% organic modifier) as an alternative to log P were calculated using the DryLab program. The relationships between the lipophilicity (log k_w) and the chemical structure of the studied compounds, as well as correlation between experimentally determined lipophilicities (log k_w) and log P data calculated using some commonly available software, are discussed.     

反相液相色谱中温度对蛋白分子构象变化的新表征

液相色谱中溶质计量置换保留模型的Ｚ值可用来对反相高效液相色谱中热变蛋白的分子构象进行表片。发现在异丙醇－甲酸４４％（Ｖ／Ｖ）－水体系为流动相对完全变性蛋白的Ｚ值随温度升高而降低。且Ｚ值与绝对温度例数（１／Ｔ）成正比，因此蛋白分子构象变化可用Ｚ对１／Ｔ作图所得两条直线的斜率差值来表征，差值愈大，蛋白分子构象变化愈甚。该两直线的交点即为蛋白分子构象的突变温度。与通常采用的１ｇＫ＇对１／Ｔ的作图相比，用     

Molecular species analysis of phosphatidylcholine by reversed-phase ion-pair high-performance liquid chromatography

The retention behavior of molecular species of phosphatidylcholine (PC) is studied by reversed-phase (RP) ion-pair high-performance liquid chromatography (HPLC). Mobile phases contain tetraalkyl ammonium phosphates (TAAPs) in methano-acetonitrile-water. The stationary phase is alkyl-bonded silica. Competitive interactions of TAAPs, analyte solutes, and an RP-HPLC column result in reduced retention of PC molecular species. PC molecular species are eluted at longer retention times with a larger size of TAAP in the mobile phase, and an increase in the TAAP concentration invariably causes a decrease in PC molecular species retention times. There is a linear correlation between the logarithmic retention factors (k) of PC molecular species and the total number of carbon atoms of TAAP, and the logarithm of k values of PC molecular species can be approximated as a linear function of the logarithm of the counter-ion concentration. There is found to be no distinct dependence between k values of PC molecular species and the mobile phase pH.     

Optimization of reversed-phase separation of some nucleosides

Optimization of the separation of ionogenic nucleosides in reversed-phase high-performance liquid chromatography can be based on the solvophobic theory of retention. The dependence of the capacity factors, selectivity, plate number and resolution on the pH may be calculated by knowing pK(a) and measuring the capacity factors for the compounds in the ionized and molecular forms. An increase in the eluent ionic strength (I) results in increased selectivity.     

Theoretical Aspects of Gradient Reversed-Phase High Performance Liquid Chromatography of Styrene – Butylacrylate Block Copolymers

Butylacrylate – styrene co-polymers prepared by atom transfer radical polymeratization were separated on an octadecyl silica column by gradient elution with tetrahydrofuran in water, up to the molar masses 10,000. In reversed-phase high performance liquid chromatography (RP-HPLC), the retention of macromolecules is affected very significantly even by change of a few tenths of per cent of the organic solvent in the aqueous-organic mobile phase. Therefore, gradient elution was used for the determination of the parameters of the equations describing the effects of the mobile phase on the retention behaviour of synthetic polymers. The retention parameters of homopolymers and copolymers were calculated from the gradient data using two retention models. The retention behaviour of the copolymers was described using the experimental gradient retention data for homopolymers.