On the mechanism of proton transfer in imidazole

The force fields, in-plane vibrations, and relative intensities of Raman spectra have been calculated and analyzed for the N₁H and N₃H tautomers of imidazole, imidazolium cation, and their model structures. The results obtained for the isolated state of imidazole correspond to the intramolecular mechanism of proton transfer.     

On the question of hydrogen bond proton transfer

A simple relation is found that connects the proton displacement value along the line of an H-bond X-H…Y at its formation with the proton transfer barrier to the acceptor Y. The fulfillment of the relation is verified by quantum-chemical calculations at the B3LYP/6-31+G(d, p) level of a series of H-bonded molecular complexes at different interatomic distances X…Y. With the aim to analyze the accuracy of this relation, calculations of model complexes were also performed with different basis sets. The effects of the basis set extension and electron correlation on the calculated values of the proton transfer barrier and the length of the X-H covalent bond in the molecular complex are considered. Using the suggested formalism for problems of proton transfer in H-bonded systems is discussed. A criterion of the barrierless transfer is introduced.     

Insights on the mechanism of proton transfer reactions in amino acids

In the present work, the joint use of the potential energy, the reaction electronic flux profiles and NBO analysis along the intrinsic reaction coordinate within the framework of the reaction force analysis allows us to gain insights into the mechanism of the proton transfer process in amino acids. The reaction was studied in alanine and phenylalanine in the presence of a continuum and with addition of one water molecule acting as a bridge, the results were compared to those of tryptophan. The bridging water molecule stabilizes the zwitterionic form and increases the reaction barriers by a factor of two. This result is interpreted in terms of the energy required to bring the amino acid and the water molecule closer to each other and to promote the proton transfer through the reordering of the electron density. Furthermore, the bridging water molecule induces a concerted asynchronous double proton transfer, where the transfer of the carboxyl hydrogen atom is followed by the second proton transfer to the ammonium group. In addition, a second not intervening water molecule was added, which changes the proton acceptor and donor properties of the reactive water molecule modulating the reaction mechanism. The aforementioned methods allow us to identify the order of the transferred protons and the asynchronicity, thereby, evolving as promising tools to not only characterize but also manipulate reaction mechanisms.     

Hydrated alizarin complexes: hydrogen bonding and proton transfer

We investigated the hydrogen bonding structures and proton transfer for the hydration complexes of alizarin (Az) produced in a supersonic jet using fluorescence excitation (FE), dispersed laser induced fluorescence (LIF), visible-visible hole burning (HB), and fluorescence detected infrared (FDIR) spectroscopy. The FDIR spectrum of bare Az with two O-H groups exhibits two vibrational bands at 3092 and 3579 cm(-1), which, respectively, correspond to the stretching vibration of O1-H1 that forms a strong intramolecular hydrogen bond with the C9=O9 carbonyl group and the stretching vibration of O2-H2 that is weakly hydrogen-bonded to O1-H1. For the 1:1 hydration complex Az(H(2)O)(1), we identified three conformers. In the most stable conformer, the water molecule forms hydrogen bonds with the O1-H1 and O2-H2 groups of Az as a proton donor and proton acceptor, respectively. In the other conformers, the water binds to the C10=O10 group in two nearly isoenergetic configurations. In contrast to the sharp vibronic peaks in the FE spectra of Az and Az(H(2)O)(1), only broad, structureless absorption was observed for Az(H(2)O)(n) (n≥ 2), indicating a facile decay process, possibly due to proton transfer in the electronic excited state. The FDIR spectrum with the wavelength of the probe laser fixed at the broad band exhibited a broad vibrational band near the O2-H2 stretching vibration frequency of the most stable conformer of Az(H(2)O)(1). With the help of theoretical calculations, we suggest that the broad vibrational band may represent the occurrence of proton transfer by tunnelling in the electronic ground state of Az(H(2)O)(n) (n≥ 2) upon excitation of the O2-H2 vibration.     

On a possible excited state proton transfer in N-formylkynurenine derivatives

It is shown that intramolecular hydrogen bonding between the

and the ortho carbonyl on the side chain of N'formylkynurenine and some parent compounds plays an important role on their spectroscopic properties. The fluorescence emissionλ_max is shifted by about 4000 cm^?1 in going from polar to non-polar solvents. This abnormally red-shifted fluorescence is attributed to an excited state proton transfer from the formamido to the ortho carbonyl of the side chain.     

On the theory of tunnelling in electron and proton transfer reactions

The concept of tunnelling in the theory of electron and proton transfer reactions has recently been questioned on the ground that the situation is a non-stationary one. It has been suggested that time-dependent perturbation theory should be applied to obtain the quantum mechanical transition probability. We have done this for a square barrier. The result for most reactions is the same as obtained by the WKB approximation.     

Influence of a polar near-neighbor on incipient proton transfer in a strongly hydrogen bonded complex

Rotational spectroscopy and ab initio calculations have been used to characterize the complexes H(3)N-HF and H(3)N-HF-HF in the gas phase. H(3)N-HF is a C(3v) symmetric, hydrogen bonded system with an NF distance of 2.640(21) A and an N...H hydrogen bond length of 1.693(42) A. The H(3)N-HF-HF complex, on the other hand, forms a six-membered HN-HF-HF ring, in which both the linear hydrogen bond in the H(3)N-HF moiety and the F-H-F angle of (HF)(2) are perturbed relative to those in the corresponding dimers. The N...F and F...F distances in the trimer are 2.4509(74) A and 2.651(11) A, respectively. The N...H hydrogen bond length in H(3)N-HF-HF is 1.488(12) A, a value which is 0.205(54) A shorter than that in H(3)N-HF. Similarly, the F...F distance, 2.651(11) A, is 0.13(2) A shorter than that in (HF)(2). Counterpoise-corrected geometry optimizations are presented, which are in good agreement with the experimental structures for both the dimer and trimer, and further characterize small, but significant, changes in the NH(3) and HF subunits upon complexation. Analysis of internal rotation in the spectrum of H(3)N-HF-HF gives the potential barrier for internal rotation of the NH(3) unit, V(3), to be 118(2) cm(-1). Ab initio calculations reproduce this number to within 10% if the monomer units and the molecular frame are allowed to fully relax as the internal rotation takes place. The binding energies of H(3)N-HF and H(3)N-HF-HF, calculated at the MP2/aug-cc-pVTZ level and corrected for basis set superposition error are 12.3 and 22.0 kcal/mol, respectively. Additional energy calculations have been performed to explore the lowest frequency vibration of H(3)N-HF-HF, a ring-opening motion that increases the NFF angle. The addition of one HF molecule to H(3)N-HF represents the first step of microsolvation of a hydrogen bonded complex and the results of this study demonstrate that a single, polar near-neighbor has a significant influence on the extent of proton transfer across the hydrogen bond. As measured using the proton-transfer parameter rho(PT), previously defined by Kurnig and Scheiner [Int. J. Quantum Chem., Quantum Biol. Symp. 1987, 14, 47], the degree of proton transfer in H(3)N-HF-HF is greater than that in either (CH(3))(3)N-HF or H(3)N-HCl but less than that in (CH(3))(3)N-HCl.     

Correlated proton motion in hydrogen bonded systems: tuning proton affinities

The theorem of matching proton affinities (PA) has been widely used in the analysis of hydrogen bonds. However, most experimental and theoretical investigations have to cope with the problem that the variation of the PA of one partner in the hydrogen bond severely affects the properties of the interface between both molecules. The B3LYP/d95+(d,p) analysis of two hydrogen bonds coupled by a 5-methyl-1H-imidazole molecule showed that it is possible to change the PA of one partner of the hydrogen bond while maintaining the properties of the interface. This technique allowed us to correlate various properties of the hydrogen bond directly with the difference in the PAs between both partners: it is possible to tune the potential energy surface of the bonding hydrogen atom from that of an ordinary hydrogen bond (localized hydrogen atom) to that of a low barrier hydrogen bond (LBHB, delocalized hydrogen atom) just by varying the proton affinity of one partner. This correlation shows clearly that matching PAs are of lesser importance for the formation of a LBHB than the relative energy difference between the two tautomers of the hydrogen bond.     

Switching from ultrafast electron transfer to proton transfer in excited drug–protein complexes upon biotransformation

Photosensitization by drugs is directly related with the excited species and the photoinduced processes arising from interaction with UVA light. In this context, the ability of gefitinib (GFT), a tyrosine kinase inhibitor (TKI) used for the treatment of a variety of cancers, to induce phototoxicity and photooxidation of proteins has recently been demonstrated. In principle, photodamage can be generated not only by a given drug but also by its photoactive metabolites that maintain the relevant chromophore. In the present work, a complete study of O-desmorpholinopropyl gefitinib (GFT-MB) has been performed by means of fluorescence and ultrafast transient absorption spectroscopies, in addition to molecular dynamics (MD) simulations. The photobehavior of the GFT-MB metabolite in solution is similar to that of GFT. However, when the drug or its metabolite are in a constrained environment, i.e. within a protein, their behavior and the photoinduced processes that arise from their interaction with UVA light are completely different. For GFT in complex with human serum albumin (HSA), locally excited (LE) singlet states are mainly formed; these species undergo photoinduced electron transfer with Tyr and Trp. By contrast, since GFT-MB is a phenol, excited state proton transfer (ESPT) to form phenolate-like excited species might become an alternative deactivation pathway. As a matter of fact, the protein-bound metabolite exhibits higher fluorescence yields and longer emission wavelengths and lifetimes than GFT@HSA. Ultrafast transient absorption measurements support direct ESPT deprotonation of LE states (rather than ICT), to form phenolate-like species. This is explained by MD simulations, which reveal a close interaction between the phenolic OH group of GFT-MB and Val116 within site 3 (subdomain IB) of HSA. The reported findings are relevant to understand the photosensitizing properties of TKIs and the role of biotransformation in this type of adverse side effects.

The photoinduced processes from the protein-bound GFT result in electron transfer, while those related with the photoactive metabolite GFT-MB induce excited state proton transfer to form phenolate-like excited species.     

Iridium phosphine abnormal N-heterocyclic carbene complexes in catalytic hydrogen transfer reactions

Several iridium complexes bearing chelating abnormal N-heterocyclic carbenes (NHCs) are shown to be active catalysts for transfer hydrogenation of ketones or enones, dehydrative C-C coupling between primary and secondary alcohols, and dehydrogenation of benzyl alcohol to benzyl benzoate. In the transfer hydrogenation of acetophenone, abnormal NHC complexes give higher activity than a normal analogue. Dehydrative C-C coupling reactions between primary and secondary alcohols result in β-alkylation of the secondary alcohols, using primary alcohols as the apparent alkylating reagents, and such reactions proceed with high yield and selectivity. These catalytic processes are known to involve metal-mediated temporary borrowing of hydrogen from alcohols and subsequent delivery of the hydrogen to CC and /or CO bonds.     

细菌紫红质中氢键相互作用和质子转移机理的分子模拟

用CHARMM程序以细菌紫红质1R84晶体为模型, 模拟了在等温定容条件下细菌紫红质在1 ps过程中的变化, 分析了与质子传递相关的ASP85, ASP212和水分子与视黄醛间氢键的结构变化情况. 考虑到氨基酸残基和席夫碱质子的不同距离, 考察了EC和PC两种结构的变化情况, 探讨了紫红质中质子传递的可能途径. 模拟结果表明1R84中可能的质子连续传递的机理是质子由席夫碱向水传递, 再由水向ASP85传递. 发现Asp212在模拟过程中保持EC结构, 这样可能更有利于顺序质子传递.     

Temperature dependence of excited state proton transfer in ice

We have studied the excited-state proton-transfer rate of four photoacids in ice as a function of temperature. For all four photoacids, we have found a non Arrhenius behavior of the proton-transfer rate constant, k(PT). d(ln k(PT))/d(1/T) decreases as the temperature decreases. The average slope of ln(k(PT))versus 1/T depends on the photoacid strength (pK*). The stronger the photoacid is, the smaller the slope. For the strongest photoacid 2-naphthol-6,8-disulfonate (2N68DS) the largest slope is 35 kJ/mol at about 270 K, and the smallest measured slope is about 8 kJ/mol at about 215 K. We propose that the temperature dependence of k(PT) in ice at the temperature range 270 > T > 200 K can be explained as arising from contributions of two proton-transfer mechanisms over the barrier and tunneling under the barrier. At very low temperatures T < 200 K, the slope of ln(k(PT)) versus 1/T increases again. At about 170 K, the proton-transfer rate is much slower than the radiative rate, and the deprotonated form of the photoacid cannot be detected in the steady-state emission spectrum. At lower temperatures, T < 200 K, the rate further decreases because of a limitation on the reaction caused by the restrictions on the H2O hydrogen reorientations.     

Pulsed liquid lasers from proton transfer in the excited state

The application of photoinduced intramolecular proton transfer to generate stimulated radiation is reported. Tunable laser pulses are produced with a 10% efficiency using sodium salicylate or 2-(o-hydroxyphenyl)benzimidazole as the active medium. In both compounds a large population inversion results from the proton transfer taking place in the electronically excited state.     

Large ground-state entropy changes for hydrogen atom transfer reactions of iron complexes

Reported herein are the hydrogen atom transfer (HAT) reactions of two closely related dicationic iron tris(alpha-diimine) complexes. FeII(H2bip) (iron(II) tris[2,2'-bi-1,4,5,6-tetrahydropyrimidine]diperchlorate) and FeII(H2bim) (iron(II) tris[2,2'-bi-2-imidazoline]diperchlorate) both transfer H* to TEMPO (2,2,6,6-tetramethyl-1-piperidinoxyl) to yield the hydroxylamine, TEMPO-H, and the respective deprotonated iron(III) species, FeIII(Hbip) or FeIII(Hbim). The ground-state thermodynamic parameters in MeCN were determined for both systems using both static and kinetic measurements. For FeII(H2bip) + TEMPO, DeltaG degrees = -0.3 +/- 0.2 kcal mol-1, DeltaH degrees = -9.4 +/- 0.6 kcal mol-1, and DeltaS degrees = -30 +/- 2 cal mol-1 K-1. For FeII(H2bim) + TEMPO, DeltaG degrees = 5.0 +/- 0.2 kcal mol-1, DeltaH degrees = -4.1 +/- 0.9 kcal mol-1, and DeltaS degrees = -30 +/- 3 cal mol-1 K-1. The large entropy changes for these reactions, |TDeltaS degrees | = 9 kcal mol-1 at 298 K, are exceptions to the traditional assumption that DeltaS degrees approximately 0 for simple HAT reactions. Various studies indicate that hydrogen bonding, solvent effects, ion pairing, and iron spin equilibria do not make major contributions to the observed DeltaS degrees HAT. Instead, this effect arises primarily from changes in vibrational entropy upon oxidation of the iron center. Measurement of the electron-transfer half-reaction entropy, |DeltaS degrees Fe(H2bim)/ET| = 29 +/- 3 cal mol-1 K-1, is consistent with a vibrational origin. This conclusion is supported by UHF/6-31G* calculations on the simplified reaction [FeII(H2N=CHCH=NH2)2(H2bim)]2+...ONH2 left arrow over right arrow [FeII(H2N=CHCH=NH2)2(Hbim)]2+...HONH2. The discovery that DeltaS degrees HAT can deviate significantly from zero has important implications on the study of HAT and proton-coupled electron-transfer (PCET) reactions. For instance, these results indicate that free energies, rather than enthalpies, should be used to estimate the driving force for HAT when transition-metal centers are involved.     

Long-range proton transfer in aqueous Acid-base reactions

We study the mechanism of proton transfer (PT) in the aqueous acid-base reaction between the photoacid 8-hydroxy-1,3,6-pyrenetrisulfonic acid (HPTS) and acetate by probing the vibrational resonances of HPTS, acetate, and the hydrated proton with femtosecond mid-infrared laser pulses. We find that PT takes place in a distribution of hydrogen-bound reaction complexes that differ in the number of water molecules separating the acid and the base. The number of intervening water molecules ranges from 0 to 5, which, together with a strongly distance-dependent PT rate, explains the observed highly nonexponential reaction kinetics. The kinetic isotope effect for the reaction is determined to be 1.5, indicating that tunneling does not play a significant role in the transfer of the proton. Rather, the transfer mechanism is best described in terms of the adiabatic PT picture as it has been formulated by Hynes and co-workers [Staib, A.; Borgis, D.; Hynes, J. T. J. Chem. Phys. 1995, 102, 2487. Ando, K.; Hynes, J. T. J. Phys. Chem. B 1997, 101, 10464.], where solvent fluctuations play an essential role in forming the correct hydrogen-bond configuration and solvent polarization to facilitate PT.     

Interaction between biimidazole complexes of ruthenium and acetate: hydrogen bonding and proton transfer

The hydrogen bonding and deprotonation processes between four ruthenium biimidazole complexes, namely [Ru(bpy)(2)(BiimH(2))](PF(6))(2) (1, bpy is bipyridine, BiimH(2) is 2,2'-biimidazole), [Ru(bpy)(2)-(BbimH(2))](PF(6))(2) (2, BbimH(2) is 2,2'-bibenzimidazole), and [Ru(bpy)(2)(DMBbimH(2))](PF(6))(2) (3, DMBbimH(2) is 7,7'-dimethyl-2,2'-bibenzimidazole) and [Ru(bpy)(2)(TMBbimH(2))](2+) (4, TMBbimH(2) is 5,6,5',6'-tetramethyl-2,2'-bibenzimidazole), and acetate are investigated. Their hydrogen bonded adducts are indeed trapped and observed by absorption spectra and electrochemical experiments in acetonitrile solution in the presence of an excess of acetic acid for the first time. The binding constants log K(B) for these adducts are 6.74 for 1·OAc, 7.11 for 2·OAc, 7.26 for 3·OAc, and 6.99 for 4·OAc. A new approach to calculate the deprotonation constant is also developed by establishing a set of circular equilibria. The equilibrium constants for the first deprotonation step of the complexes log K(A) are 2.74 for 1, 5.19 for 2, 4.54 for 3, and 3.78 for 4. The pK(a1) values of the complexes in acetonitrile solution are calculated by subtracting log K(A) from pK(a) (HOAc in acetonitrile), giving 19.6 for 1, 17.1 for 2, 17.8 for 3, and 18.5 for 4. The degree of proton transfer (D(PT)) can be quantified by the calculation of absorption spectral and redox data, which is 0.41 for 1·OAc, 0.53 for 2·OAc, 0.57 for 3·OAc, and 0.47 for 4·OAc. Interestingly, the binding constant log K(B) (7.26) and D(PT) value (0.57) both reach their maxima at a critical point, where pK(a1) for the complex is 17.8 and ΔpK(a) for the adduct is 4.5 (ΔpK(a) = pK(a)(HOAc) - pK(a1), in acetonitrile solution). Moreover, the binding constant log K(B) shows linear correlation with the degree of proton transfer D(PT).