The nature of the low energy band of the Fenna-Matthews-Olson complex: vibronic signatures

Based entirely upon actual experimental observations on electron-phonon coupling, we develop a theoretical framework to show that the lowest energy band of the Fenna-Matthews-Olson complex exhibits observable features due to the quantum nature of the vibrational manifolds present in its chromophores. The study of linear spectra provides us with the basis to understand the dynamical features arising from the vibronic structure in nonlinear spectra in a progressive fashion, starting from a microscopic model to finally performing an inhomogeneous average. We show that the discreteness of the vibronic structure can be witnessed by probing the diagonal peaks of the nonlinear spectra by means of a relative phase shift in the waiting time resolved signal. Moreover, we demonstrate that the photon-echo and non-rephasing paths are sensitive to different harmonics in the vibrational manifold when static disorder is taken into account. Supported by analytical and numerical calculations, we show that non-diagonal resonances in the 2D spectra in the waiting time, further capture the discreteness of vibrations through a modulation of the amplitude without any effect in the signal intrinsic frequency. This fact generates a signal that is highly sensitive to correlations in the static disorder of the excitonic energy albeit protected against dephasing due to inhomogeneities of the vibrational ensemble.     

Mediation of resonance energy transfer by a third molecule

The influence of a third molecule on the rate of resonance energy transfer is studied using diagrammatic perturbation theory within the framework of molecular quantum electrodynamics. Two distinct mechanisms are identified. One corresponds to direct transfer between donor and acceptor while the other involves relay of energy by the third species. Fermi Golden rule transition rates valid for all separation distances beyond wave function overlap are evaluated for these two processes as well as for the interference term between direct and indirect exchange, thereby extending previous work which was limited to the near-zone only. Short- and long-range limits are also obtained in each case. It is found that in the near-zone the indirect rate contribution exhibits inverse sixth power dependence on relative distances of emitter and absorber relative to the third body, in contrast to its far-zone counterpart, which exhibits inverse square behavior. The interference term, however, displays inverse cubic dependence on all three distance vectors at short-range and inverse behavior in the far-zone. Interestingly, for a collinear arrangement of the three molecules in the near-zone, the interference term is negative, reducing the overall rate of energy transfer. The results obtained are interpreted in terms of microscopic and macroscopic pictures of transfer occurring within a surrounding medium.     

Optically controlled resonance energy transfer: mechanism and configuration for all-optical switching

In a molecular system of energy donors and acceptors, resonance energy transfer is the primary mechanism by means of which electronic energy is redistributed between molecules, following the excitation of a donor. Given a suitable geometric configuration it is possible to completely inhibit this energy transfer in such a way that it can only be activated by application of an off-resonant laser beam: this is the principle of optically controlled resonance energy transfer, the basis for an all-optical switch. This paper begins with an investigation of optically controlled energy transfer between a single donor and acceptor molecule, identifying the symmetry and structural constraints and analyzing in detail the dependence on molecular energy level positioning. Spatially correlated donor and acceptor arrays with linear, square, and hexagonally structured arrangements are then assessed as potential configurations for all-optical switching. Built on quantum electrodynamical principles the concept of transfer fidelity, a parameter quantifying the efficiency of energy transportation, is introduced and defined. Results are explored by employing numerical simulations and graphical analysis. Finally, a discussion focuses on the advantages of such energy transfer based processes over all-optical switching of other proposed forms.     

Vibrational energy transfer in ozone by infrared-ultraviolet double resonance

Absorption transients at 254 nm have been observed in O₃-O₂ mixtures following laser irradiation at 9.64 μm. From analysis of these transients, we are able to determine vibrational relaxation rate constants (O₃-O₂ λ₁^?1/[O₂] = (2560±370) Torr^?1 S^?1, λ₂^?1/[O₂] = (640±50) Torr^?1 S^?1, and also a v₁-v₃ equilibration rate constant (O₃-O₃) of (1.5±1.0) × 10⁶ Torr^?1 S^?1.     

Polaron-exciton model of resonance energy transfer

It is shown that F?rster's expression for the electronic energy transfer rate can be recast in a form predicted for exciton motion that interacts strongly with molecular vibrations. Using a simple model based on the Kennard-Stepanov theory, F?rster's expression for the spectral overlap is shown to be of a thermally activated form, as obtained previously by multiphonon theory. In contrast, the high-frequency internal vibrations contribute a factor which results from tunneling through a potential barrier between potential curves in the configuration coordinate diagram. We thus show that resonance energy transfer is equivalent to phonon-assisted hopping of a trapped excitonic polaron.     

利用荧光共振能量转移体系测定食品中NO2-的研究

在λcx/λem=450／580nm,0．1mol／L的HCl溶液中,番红花红T和吖啶橙能够发生有效的共振能量转移,使得番红花红T荧光增强,同时吖啶橙的荧光猝灭,而NO2^-的加入使得两者的荧光强度同时减弱。由此建立了一种新的测定痕量NO2^-的方法。结果表明,NO2^-在0．02～10μg／mL范围内与染料的荧光强度减弱程度呈良好的线性关系,方法检出限为1．73ng／mL;该法用于食品中NO2^-的测定,回收率为105．0％～112．4％。     

Control of emission by intermolecular fluorescence resonance energy transfer and intermolecular charge transfer

Control of emission by intermolecular fluorescence resonant energy transfer (IFRET) and intermolecular charge transfer (ICT) is investigated with the quantum-chemistry method using two-dimensional (2D) and three-dimensional (3D) real space analysis methods. The work is based on the experiment of tunable emission from doped 1,3,5-triphenyl-2-pyrazoline (TPP) organic nanoparticles (Peng, A. D.; et al. Adv. Mater. 2005, 17, 2070). First, the excited-state properties of the molecules, which are studied (TPP and DCM) in that experiment, are investigated theoretically. The results of the 2D site representation reveal the electron-hole coherence and delocalization size on the excitation. The results of 3D cube representation analysis reveal the orientation and strength of the transition dipole moments and intramolecular or intermolecular charge transfer. Second, the photochemical quenching mechanism via IFRET is studied (here "resonance" means that the absorption spectrum of TPP overlaps with the fluorescence emission spectrum of DCM in the doping system) by comparing the orbital energies of the HOMO (highest occupied molecular orbital) and the LUMO (lowest unoccupied molecular orbital) of DCM and TPP in absorption and fluorescence. Third, for the DCM-TPP complex, the nonphotochemical quenching mechanism via ICT is investigated. The theoretical results show that the energetically lowest ICT state corresponds to a pure HOMO-LUMO transition, where the densities of the HOMO and LUMO are strictly located on the DCM and TPP moieties, respectively. Thus, the lowest ICT state corresponds to an excitation of an electron from the HOMO of DCM to the LUMO of TPP.     

Solid-emissive rhodamine: hydrogen bonding-assisted efficient intermolecular fluorescence resonance energy transfer in the solid state

Solid-emissive rhodamine complexes are obtained by mixing commercial rhodamine B (RhB) with the recently developed solid-emissive boron 2-(2′-pyridyl)imidazole (BOPIM) derivatives. The formation of intermolecular hydrogen bonds between RhB and BOPIM dyes plays a key role in the emission of RhB in the solid state. The disappearance of emissions from BOPIM dyes indicates the occurrence of efficient intermolecular fluorescence resonance energy transfer (FRET). The hydrogen bond also helps prevent the intermolecular interaction between the carboxyl moieties on RhB to alleviate concentration-induced fluorescence quenching because the emission of the complexes can be directly lightened by excitation at the RhB absorption (510 nm). Our results indicate that intermolecular FRET assisted by non-covalent interactions can be an efficient tool for constructing red or near-infrared solid emitters.     

Quantum pathways for resonance energy transfer

A quantum electrodynamical calculation is presented that focuses individually on the two quantum pathways or time orderings for resonance energy transfer. Conventional mathematical procedures necessitate summing the quantum pathway amplitudes at an early stage in the calculations. Here it is shown, by the adoption of a different strategy that allows deferral of the amplitude summation, that it is possible to elicit key information regarding the relative significance of the two pathways and their distinct distance dependences. A special function integration method delivers equations that also afford new insights into the behavior of virtual photons. It is explicitly demonstrated that both time-ordered pathways are effective at short distances, while in the far field the dissipation of virtual traits favors one pathway. Hitherto unknown features are exhibited in the oblique asymptotic behavior of the time-ordered contributions and their quantum interference. Consistency with the rate equations of resonance energy transfer is demonstrated and results are presented graphically.     

一种萘酰亚胺类荧光共振能量转移型光酸探针

合成了一种未见文献报道的键合螺噁嗪单元的1,8-萘二甲酰亚胺类化合物3,通过核磁共振谱和高分辨质谱确证了其结构.化合物在某些有机溶剂中和粉末状态下都能发射较强的荧光,研究了化合物3在二甲基亚砜中聚集诱导荧光增强(AIE)性质.在滤纸上以及用薄层层析硅胶(TLC)都能检测到螺噁嗪单元的光致变色现象;螺噁嗪单元酸致开环产物...     

Highly efficient photoreduction of water using energy transfer

The photochemistry of the system water-tris(2,2′-bipyridine)ruthenium(II) dication—9-anthracenecarboxylate anion—methylviologen—ethylenediaminetetraacetic acid—platinum has been studied. Efficient triplet energy transfer from the excited ruthenium complex to the anthracene derivative leads to the formation of hydrogen in quantum yields up to 0.85.     

Quantum dot-based multiplexed fluorescence resonance energy transfer

We demonstrate the use of luminescent quantum dots (QDs) conjugated to dye-labeled protein acceptors for nonradiative energy transfer in a multiplexed format. Two configurations were explored: (1) a single color QD interacting with multiple distinct acceptors and (2) multiple donor populations interacting with one type of acceptor. In both cases, we showed that simultaneous energy transfer between donors and proximal acceptors can be measured. However, data analysis was simpler for the configuration where multiple QD donors are used in conjunction with one acceptor. Steady-state fluorescence results were corroborated by time-resolved measurements where selective shortening of QD lifetime was measured only for populations that were selectively engaged in nonradiative energy transfer.     

Fluorescence resonance energy transfer in dye-labeled DNA

We present the results of molecular modeling of dye-labeled, double-stranded DNA. The structural information obtained from the simulations are used as input to an analysis of energy transfer in this system. The simulations reveal the nature of the interaction between a pair of fluorophores and DNA. The donor, tetramethylrhodamine, TMR, attached to the 5′-end of DNA with a six-carbon tether, interacts primarily with DNA's minor groove, but occasionally stacks against the DNA base pairs. The acceptor, Cy5, attached to the opposite strand at positions n (n = 7, 12, 14, 16, 19, 24, 27), binds in the major groove in two distinct locations on the upper and lower part of the groove. We analyzed in detail the dye-to-dye distances, dipole orientation factors and fluorescence resonance energy transfer (FRET) rates. Tests of the validity of the Förster model were conducted using the transition density cube (TDC) method, which provides the exact Coulombic interaction within a certain model chemistry. Our studies show that the use of long tethers does not guarantee rotational freedom of the dyes, as intended in the experiments. Instead, the tethers allow Cy5 to bind in two different geometries, which causes a large uncertainty in the dye-to-dye distances. Our results also show significant fluctuation in the orientation factor, κ², which, together with uncertainty in dye-to-dye distances, cause considerable uncertainty in interpreting FRET measurements. We suggest that molecular modeling, combined with the TDC method, provides a useful tool in designing and interpreting FRET experiments.     

Single-molecule quantum-dot fluorescence resonance energy transfer.

Colloidal semiconductor quantum dots are promising for single-molecule biological imaging due to their outstanding brightness and photostability. As a proof of concept for single-molecule fluorescence resonance energy transfer (FRET) applications, we measured FRET between a single quantum dot and a single organic fluorophore Cy5. DNA Holliday junction dynamics measured with the quantum dot/Cy5 pair are identical to those obtained with the conventional Cy3/Cy5 pair, that is, conformational changes of individual molecules can be observed by using the quantum dot as the donor.     

Fluorescence resonance energy transfer in polydiacetylene liposomes

Conjugated polydiacetylene (PDA) possessing stimuli-responsive properties has been intensively investigated for developing efficient sensors. We report here fluorescence resonance energy transfer (FRET) in liposomes synthesized using different molar ratios of dansyl-tagged diacetylene and diacetylene-carboxylic acid monomers. Photopolymerization of diacetylene resulted in cross-linked PDA liposomes. We used steady-state electronic absorption, emission, and fluorescence anisotropy (FA) analysis to characterize the thermal-induced FRET between dansyl fluorophores (donor) and PDA (acceptor). We found that the monomer ratio of acceptor to donor ( R ad) and length of linkers (functional part that connects dansyl fluorophores to the diacetylene group in the monomer) strongly affected FRET. For R ad = 10 000, the acceptor emission intensity was amplified by more than 18 times when the liposome solution was heated from 298 to 338 K. A decrease in R ad resulted in diminished acceptor emission amplification. This was primarily attributed to lower FRET efficiency between donors and acceptors and a higher background signal. We also found that the FRET amplification of PDA emissions after heating the solution was much higher when dansyl was linked to diacetylene through longer and flexible linkers than through shorter linkers. We attributed this to insertion of dansyl in the bilayer of the liposomes, which led to an increased dansyl quantum yield and a higher interaction of multiple acceptors with limited available donors. This was not the case for shorter and more rigid linkers where PDA amplification was much smaller. The present studies aim at enhancing our understanding of FRET between fluorophores and PDA-based conjugated liposomes. Furthermore, receptor tagged onto PDA liposomes can interact with ligands present on proteins, enzymes, and cells, which will produce emission sensing signal. Therefore, using the present approach, there exist opportunities for designing FRET-based highly sensitive and selective chemical and biochemical sensors.     

Fluorescence resonance energy transfer by quencher adsorption into hydrogels containing fluorophores

We synthesized anionic hydrogels containing fluorophores and investigated the adsorption of a cationic quencher having an amino group into hydrogels by fluorescence resonance energy transfer (FRET). FRET from the fluorophore to the quencher in hydrogels was examined by fluorescence intensity and fluorescence decay using a fluorescence spectrophotometer and femtosecond laser spectroscopy. The fluorescence intensity of the fluorophore‐containing hydrogels decreased rapidly with increasing amounts of adsorbed cationic quencher. The fluorescence emission of the fluorophore in the quencher‐adsorbed hydrogels containing fluorophores decayed more rapidly than that of the original hydrogels. The aforementioned result indicates that the fluorescence of the fluorophore‐containing hydrogels is quenched due to FRET from the fluorophore to the quencher as the cationic quenchers can approach the fluorophores in hydrogels by electrostatic interactions. © 2006 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 44: 3245–3252, 2006     

Ultrafast dynamics of resonance energy transfer in cryptochrome

In this communication, we report the ultrafast dynamics of resonance energy transfer in a blue-light photoreceptor, Vibrio cholerae cryptochrome. The transfer was observed to occur in 60 ps. We also studied the local rigidity and solvation around the binding site of the photoantenna molecule. The results for the first time show energy transfer in cryptochrome suggesting some mechanistic similarities between photolyase that repairs damaged DNA and cryptochrome that mediates blue-light signaling.