Information visualization techniques for sensing and biosensing

The development of new methods and concepts to visualize massive amounts of data holds the promise to revolutionize the way scientific results are analyzed, especially when tasks such as classification and clustering are involved, as in the case of sensing and biosensing. In this paper we employ a suite of software tools, referred to as PEx-Sensors, through which projection techniques are used to analyze electrical impedance spectroscopy data in electronic tongues and related sensors. The possibility of treating high dimension datasets with PEx-Sensors is advantageous because the whole impedance vs. frequency curves obtained with various sensing units and for a variety of samples can be analyzed at once. It will be shown that non-linear projection techniques such as Sammon's Mapping or IDMAP provide higher distinction ability than linear methods for sensor arrays containing units capable of molecular recognition, apparently because these techniques are able to capture the cooperative response owing to specific interactions between the sensing unit material and the analyte. In addition to allowing for a higher sensitivity and selectivity, the use of PEx-Sensors permits the identification of the major contributors for the distinguishing ability of sensing units and of the optimized frequency range. The latter will be illustrated with sensing units made with layer-by-layer (LbL) films to detect phytic acid, whose capacitance data were visualized with Parallel Coordinates. Significantly, the implementation of PEx-Sensors was conceived so as to handle any type of sensor based on any type of principle of detection, representing therefore a generic platform for treating large amounts of data for sensors and biosensors.     

Using multidimensional projection techniques for reaching a high distinguishing ability in biosensing

Recent advances in the control of molecular engineering architectures have allowed unprecedented ability of molecular recognition in biosensing, with a promising impact for clinical diagnosis and environment control. The availability of large amounts of data from electrical, optical, or electrochemical measurements requires, however, sophisticated data treatment in order to optimize sensing performance. In this study, we show how an information visualization system based on projections, referred to as Projection Explorer (PEx), can be used to achieve high performance for biosensors made with nanostructured films containing immobilized antigens. As a proof of concept, various visualizations were obtained with impedance spectroscopy data from an array of sensors whose electrical response could be specific toward a given antibody (analyte) owing to molecular recognition processes. In addition to discussing the distinct methods for projection and normalization of the data, we demonstrate that an excellent distinction can be made between real samples tested positive for Chagas disease and Leishmaniasis, which could not be achieved with conventional statistical methods. Such high performance probably arose from the possibility of treating the data in the whole frequency range. Through a systematic analysis, it was inferred that Sammon's mapping with standardization to normalize the data gives the best results, where distinction could be made of blood serum samples containing 10(-7) mg/mL of the antibody. The method inherent in PEx and the procedures for analyzing the impedance data are entirely generic and can be extended to optimize any type of sensor or biosensor.     

Gas sensing mechanism in chemiresistive cobalt and metal-free phthalocyanine thin films

The gas sensing behaviors of cobalt phthalocyanine (CoPc) and metal-free phthalocyanine (H2Pc) thin films were investigated with respect to analyte basicity. Chemiresistive sensors were fabricated by deposition of 50 nm thick films on interdigitated gold electrodes via organic molecular beam epitaxy (OMBE). Time-dependent current responses of the films were measured at constant voltage during exposure to analyte vapor doses. The analytes spanned a range of electron donor and hydrogen-bonding strengths. It was found that, when the analyte exceeded a critical base strength, the device responses for CoPc correlated with Lewis basicity, and device responses for H2Pc correlated with hydrogen-bond basicity. This suggests that the analyte-phthalocyanine interaction is dominated by binding to the central cavity of the phthalocyanine with analyte coordination strength governing CoPc sensor responses and analyte hydrogen-bonding ability governing H2Pc sensor responses. The interactions between the phthalocyanine films and analytes were found to follow first-order kinetics. The influence of O2 on the film response was found to significantly affect sensor response and recovery. The increase of resistance generally observed for analyte binding can be attributed to hole destruction in the semiconductor film by oxygen displacement, as well as hole trapping by electron donor ligands.     

Molecular and morphological characterization of bis benzimidazo perylene films and surface-enhanced phenomena

Thin solid films of bis benzimidazo perylene (AzoPTCD) were fabricated using physical vapor deposition (PVD) technique. Thermal stability and integrity of the AzoPTCD PVD films during the fabrication ( approximately 400 degrees C at 10(-6) Torr) were monitored by Raman scattering. Complementary thermogravimetric results showed that thermal degradation of AzoPTCD occurs at 675 degrees C. The growth of the PVD films was established through UV-vis absorption spectroscopy, and the surface morphology was surveyed by atomic force microscopy (AFM) as a function of the mass thickness. The AzoPTCD molecular organization in these PVD films was determined using the selection rules of infrared absorption spectroscopy (transmission and reflection-absorption modes). Despite the molecular packing, X-ray diffraction revealed that the PVD films are amorphous. Theoretical calculations (density functional theory, B3LYP) were used to assign the vibrational modes in the infrared and Raman spectra. Metallic nanostructures, able to sustain localized surface plasmons (LSP) were used to achieve surface-enhanced resonance Raman scattering (SERRS) and surface-enhanced fluorescence (SEF).     

Electric cell-substrate impedance sensing with screen printed electrode structures

Impedance sensors in thick film technology have been tested as a tool for electric cell-substrate impedance sensing. The screen printed Pt electrodes have a width of 250-400 microm. Electrodes and the surrounding ceramic chip substrate could be homogeneously grown with L-929 and Hela cells. The performance of a screen printed interdigitated electrode structure (IDES) was compared with that of thin film structures with the same layout geometry. The thick film impedance sensors allowed to correctly record the morphological response of confluent Hela cell layers to stimulation with histamine. A thick film conductivity sensor also revealed impedance values which were dependent on cell growth on the electrode surface, even at a very low frequency range of approximately 1 Hz.     

Exploring three-dimensional nanosystems with Raman spectroscopy: methylene blue adsorbed on thiol and sulfur monolayers on gold

Resonant Raman and surface-enhanced Raman scattering (SERS) spectroscopies, complemented with scanning tunnel microscopy and electrochemical techniques, have been used to obtain information about the amount and spatial distribution of methylene blue (MB) molecules immobilized on sulfur and four ultrathin molecular alkanethiolate films self-assembled on Au(111) and rough Au electrodes. The intensity of the Raman signals allow one to estimate the amount of immobilized MB at different organic films, whereas the decrease in the SERS intensity as a function of distance for the rough Au electrodes is used to locate the average position of the MB species with respect to the Au substrate. We found that significant amounts of cationic MB species are able to diffuse into methyl-terminated thiols, but they are stopped at the outer plane of the self-assembled monolayer (SAM) by negatively charged carboxylate groups. The relative shift of C-N stretching Raman modes indicates that the binding of MB to S is different from that found for MB on thiols. Most of the molecules immobilized on methyl- and carboxylate-terminated thiols are electrochemically inactive, suggesting that strong coupling between the Au electrode and the MB molecules is needed for charge transfer. Our results are consistent with a small population of electrochemically active MB species very close to the Au surface that reach this position driven by their lipophilic (hydrophobic) character through defects at SAMs.     

Exploiting distinct molecular architectures of ultrathin films made with iron phthalocyanine for sensing

The possibility of generating distinct film properties from the same material is crucial for a number of applications, which can only be achieved by controlling the molecular architecture. In this paper we demonstrate as a proof-of-principle that ultrathin films produced from iron phthalocyanine (FePc) may be used to detect trace amounts of copper ions in water, where advantage was taken of the cross sensitivity of the sensing units that displayed distinct electrical properties. The ultrathin films were fabricated with three methods, namely physical vapor deposition (PVD), Langmuir-Blodgett (LB), and electrostatic layer-by-layer (LbL) techniques, where for the latter tetrasulfonated phthalocyanine was used (FeTsPc). PVD and LB films were more homogeneous than the LbL films at both microscopic and nanoscopic scales, according to results from micro-Raman spectroscopy and atomic force microscopy (AFM), respectively. From FTIR spectroscopy data, these more homogeneous films were found to have FePc molecules oriented preferentially, tilted in relation to the substrate surface, while FeTsPc molecules were isotropically distributed in the LbL films. Impedance spectroscopy measurements with films adsorbed onto interdigitated gold electrodes indicated that the electrical response depends on the type of film-forming method and varies with incorporation of copper ions in aqueous solutions. Using principal component analysis (PCA), we were able to exploit the cross sensitivity of the sensing units and detect copper ions (Cu(2+)) down to 0.2 mg/L, not only in ultrapure water but also in distilled and tap water. This level of sensitivity is sufficient for quality control of water for human consumption, with a fast, low-cost method.     

Laser-induced Graphene in Facts,Numbers, and Notes in View of Electroanalytical Applications: A Review

In this review, laser-induced graphene (LIG) -based electrodes are discussed by covering such essential areas, as a characterization of LIG material properties necessary for electroanalysis, including data on LIG sheet resistance, wettability, spatial resolution, electrochemical characteristics, as well as correlations of “process” - “properties” - “electroanalytical characteristics”of LIG-electrodes. Moreover, typical and innovative LIG-based electrodes designs for electroanalytical applications, including combined multi-analyte multimodal wearable sensors, interdigitated electrodes, are shown. The essential data related to LIG in electroanalysis are summarized in tables. The authors also discussed recent LIG-based electroanalytical applications. Close attention has been paid to LIG glucose sensors and biosensors.     

Immbolization of uricase enzyme in Langmuir and Langmuir-Blodgett films of fatty acids: possible use as a uric acid sensor

Preserving the enzyme structure in solid films is key for producing various bioelectronic devices, including biosensors, which has normally been performed with nanostructured films that allow for control of molecular architectures. In this paper, we investigate the adsorption of uricase onto Langmuir monolayers of stearic acid (SA), and their transfer to solid supports as Langmuir-Blodgett (LB) films. Structuring of the enzyme in β-sheets was preserved in the form of 1-layer LB film, which was corroborated with a higher catalytic activity than for other uricase-containing LB film architectures where the β-sheets structuring was not preserved. The optimized architecture was also used to detect uric acid within a range covering typical concentrations in the human blood. The approach presented here not only allows for an optimized catalytic activity toward uric acid but also permits one to explain why some film architectures exhibit a superior performance.     

Methylene blue and neutral red electropolymerisation on AuQCM and on modified AuQCM electrodes: an electrochemical and gravimetric study

The phenazine monomers neutral red (NR) and methylene blue (MB) have been electropolymerised on different quartz crystal microbalance (QCM) substrates: MB at AuQCM and nanostructured ultrathin sputtered carbon AuQCM (AuQCM/C), and NR on AuQCM and on layer-by-layer films of hyaluronic acid with myoglobin deposited on AuQCM (AuQCM-{HA/Mb}(6)). The surface of the electrode substrates was characterised by atomic force microscopy (AFM), and the frequency changes during potential cycling electropolymerisation of the monomer were monitored by the QCM. The study investigates how the monomer chemical structure together with the electrode morphology and surface structure can influence the electropolymerisation process and the electrochemical properties of the phenazine-modified electrodes. Differences between MB and NR polymerisation, as well as between the different substrates were found. The electrochemical properties of the PNR-modified electrodes were analysed by cyclic voltammetry and electrochemical impedance spectroscopy and compared with the unmodified AuQCM. The results are valuable for future applications of modified AuQCM as substrates for electroactive polymer film deposition and applications in redox-mediated electrochemical sensors and biosensors.     

Layer-by-layer construction of protein architectures through avidin–biotin and lectin–sugar interactions for biosensor applications

In this review, the preparation and properties of protein architectures constructed by layer-by-layer (LbL) deposition through avidin–biotin and concanavalin A (Con A)–sugar interactions are discussed in relation to their use for optical and electrochemical biosensors. LbL films can be constructed through the alternate deposition of avidin and biotin-labeled enzymes on the surfaces of optical probes and electrodes. The enzymes retain their catalytic activity, resulting in the formation of optical and electrochemical biosensors. Alternatively, Con A can be used to construct enzyme-containing LbL films and microcapsules using sugar-labeled enzymes. Some enzymes such as glucose oxidase and horseradish peroxidase can be used for this purpose without labeling with sugar, because these enzymes contain intrinsic hydrocarbon chains on their molecular surfaces. The Con A/enzyme LbL architectures were successfully used to develop biosensors sensitive to specific substrates of the enzyme. In addition, Con A-based films can be used for the optical and electrochemical detection of sugars.     

High enzymatic activity preservation with carbon nanotubes incorporated in urease-lipid hybrid Langmuir-Blodgett films

The search for optimized architectures, such as thin films, for the production of biosensors has been challenged in recent decades, and thus, the understanding of molecular interactions that occur at interfaces is essential to improve the construction of nanostructured devices. In this study, we investigated the possibility of using carbon nanotubes in hybrid Langmuir-Blodgett (LB) films of lipids and urease to improve the catalytic performance of the immobilized enzyme. The molecular interactions were first investigated at the air-water interface with the enzyme adsorbed from the aqueous subphase onto Langmuir monolayers of dimyristoylphosphatidic acid (DMPA). The transfer to solid supports as LB films and the subsequent incorporation of carbon nanotubes in the hybrid film permitted us to evaluate how these nanomaterials changed the physical properties of the ultrathin film. Colorimetric measurments indicated that the presence of nanotubes preserved and enhanced the enzyme activity of the film, even after 1 month. These results show that the use of such hybrid films is promising for the development of biosensors with an optimized performance.     

Mechanochemical Sensing: A Biomimetic Sensing Strategy

Existing biosensors employ two major components: analyte recognition and signal transduction. Although specificity is achieved through analyte recognition, sensitivity is usually enhanced through a chemical amplification stage that couples the two main units in a sensor. Although highly sensitive, the extra chemical amplification stage complicates the sensing protocol. In addition, it separates the two elements spatiotemporally, reducing the real‐time response of the biosensor. In this review, we discuss the new mechanochemical biosensors that employ mechanochemical coupling strategies to overcome these issues. By monitoring changes in the mechanical properties of a single‐molecule template upon analyte binding, single‐molecule sensitivity is reached. As chemical amplification becomes unnecessary in this single‐molecule mechanochemical sensing (SMMS) strategy, real‐time sensing is achieved.     

Analytical characteristics and sensitivity mechanisms of electrolyte-insulator-semiconductor system-based chemical sensors—a critical review

Recent trends in research and development of electrolyte-insulator-semiconductor (EIS) field-effect chemical sensors (ion-selective field-effect transistors, light-addressable potentiometric sensors, capacitive EIS-sensors) with inorganic gate insulators (oxide, nitride and chalcogenide films) are reviewed. Physical properties of EIS systems and basic mechanisms of their chemical sensitivity are examined. Analytical characteristics and sensing mechanisms of EIS pH sensors with oxide and nitride films, as well as metal ions sensors with chalcogenide films, are critically discussed. Prospects of future research on EIS field-effect biosensors are briefly outlined.     

Surface-enhanced raman scattering on dendrimer/metallic nanoparticle layer-by-layer film substrates

In this paper, the fabrication, characterization, and application of unique layer-by-layer (LBL) films of dendrimers and metallic nanoparticles is reported. Silver nanoparticles (d = approximately 20 nm) are produced in solution by sodium citrate reduction and incorporated into thin films with generation 1 and 5 DAB-Am dendrimers (polypropylenimine dendrimers with amino surface groups) by the LBL technique. The resulting nanocomposite films are characterized by UV-visible surface plasmon absorption and atomic force microscopy (AFM) measurements, and employed as substrates for surface-enhanced Raman scattering (SERS) of 2-naphthalenethiol. Through variation of the molecular size (dendrimer generation) and concentration of the cross-linker used, as well as the number of layers produced, the optical properties of several different possible architectures are studied. In the films, Ag nanoparticles are shown to be effectively immobilized and stabilized with increased control over their spacing and aggregation. Moreover, the films are shown to be excellent substrates for SERS measurements, demonstrating significant enhancement capability. As expected, large electromagnetic enhancement of Raman scattering signals is found to be strongly dependent on interparticle coupling between neighboring metallic nanoparticles. Finally, the possibility of detecting SERS signals from architectures with intervening layers between the metal nanoparticles and analyte molecules is explored. It is shown that although there are decreases in intensity with increasing number of intervening layers (as is expected from the distance dependence of SERS), electromagnetic enhancement is still able to function at these distances, thus offering the possibility of developing sensors with external layers that are chemically selective for specific analytes.     

Downhill protein folding modules as scaffolds for broad-range ultrafast biosensors

Conformational switches are macromolecules that toggle between two states (active/inactive or folded/unfolded) upon specific binding to a target molecule. These molecular devices provide an excellent scaffold for developing real-time biosensors. Here we take this concept one step beyond to build high-performance conformational rheostat sensors. The rationale is to develop sensors with expanded dynamic range and faster response time by coupling a given signal to the continuous (rather than binary) unfolding process of one-state downhill folding protein modules. As proof of concept we investigate the pH and ionic-strength sensing capabilities of the small α-helical protein BBL. Our results reveal that such a pH/ionic-strength sensor exhibits a linear response over 4 orders of magnitude in analyte concentration, compared to the 2 orders of magnitude for switches, and nearly concentration-independent microsecond response times.     

Air-stable spin-coated naphthalocyanine transistors for enhanced chemical vapor detection

Air-stable organic thin-film transistor (OTFT) sensors fabricated using spin-cast films of 5,9,14,18,23,27,32,36-octabutoxy-2,3-naphthalocyanine (OBNc) demonstrated improved chemical vapor sensitivity and selectivity relative to vacuum-deposited phthalocyanine (H(2)Pc) OTFTs. UV-vis spectroscopy data show that annealed spin-cast OBNc films exhibit a red-shift in the OBNc Q-band λ(max) which is generally diagnostic of improved π-orbital overlap in phthalocyanine ring systems. Annealed OBNc OTFTs have mobilities of 0.06 cm(2) V(-1) s(-1), low threshold voltages (|V(th)| < 1 V), and on/off ratios greater than 10(6). These air-stable device parameters are utilized for sensing modalities which enhance the sensitivity and selectivity of OBNc OTFTs relative to H(2)Pc OTFTs. While both sensors exhibit mobility decreases for all analytes, only OBNc OTFTs exhibit V(th) changes for highly polar/nonpolar analytes. The observed mobility decreases for both sensors are consistent with electron donation trends via hydrogen bonding by basic analytes. In contrast, V(th) changes for OBNc sensors appear to correlate with the analyte's octanol-water partition coefficient, consistent with polar molecules stabilizing charge in the organic semiconductor film. The analyte induced V(th) changes for OBNc OTFTs can be employed to develop selective multiparameter sensors which can sense analyte stabilized fixed charge in the film.     

Effect of additives on LiMo3Se3 nanowire film chemical sensors

Here we investigate the effect of lithium iodide and cetyltrimethylammonium (CTA) bromide additives on the ability of LiMo(3)Se(3) nanowire film sensors to bind and detect organic solvents electrically. Both additives decrease the electrical conductivity of the films. Lithium iodide increases the response of the films to both polar and nonpolar analytes. CTA increases the response of the films to nonpolar analytes but reduces the response to polar analytes. Quartz crystal microbalance measurements show that the modified electrical sensitivities of the films are due to altered analyte adsorption abilities of the films. These results show that the Li(+) ions are involved in analyte binding in native LiMo(3)Se(3) films and that a programming of LiMo(3)Se(3) nanowire film sensors is possible by replacing lithium cations with other receptors.     

Inkjet-printed gold nanoparticle chemiresistors: Influence of film morphology and ionic strength on the detection of organics dissolved in aqueous solution

The influence of film morphology on the performance of inkjet-printed gold nanoparticle chemiresistors has been investigated. Nanoparticles deposited from a single-solvent system resulted in a “coffee ring”-like structure with most of the materials deposited at the edge. It was shown that the uniformity of the film could be improved if the nanoparticles were deposited from a mixture of solvents comprising N-methyl-2-pyrrolidone and water. Electrical conductivity measurements showed that both “coffee ring” and “flat” films were qualitatively similar suggesting that the films have similar nanoscale structures. To form the functional chemiresistor device, the 4-(dimethylamino)pyridine coating on the nanoparticle was exchanged with 1-hexanethiol to provide a hydrophobic sensing layer. The performance of 1-hexanethiol coated gold nanoparticle chemiresistors to small organic molecules, toluene, dichloromethane and ethanol dissolved in 1 M KCl in regard to changes in impedance and response times was unaffected by the film morphology. For larger hydrocarbons such as octane, the rate of uptake of the analyte into the film was significantly faster when the flatter nanoparticle film was used as opposed to the “coffee ring” film which has a thicker edge. Furthermore, the presence of potassium and chloride ions in the solution media does not significantly affect the impedance of the nanoparticle film at 1 Hz (<2% variation in film impedance over more than four orders of magnitude change in ionic strength). However, the ionic strength of the media affected the partitioning of the analyte into the hydrophobic nanoparticle film. The response of the sensor was found to increase with an increased salt concentration due to a salting-out of the analyte from the solution.     

SEM and ECIS Investigation of Cells Cultured on Nanopillar Modified Interdigitated Impedance Electrodes for Analysis of Cell Growth and Cytotoxicity of Potential Anticancer Drugs

Cell‐based biosensors treat living cells as sensing elements and are able to detect the functional information of biologically active analytes. Monitoring cytotoxicity with high sensitivity, rapidity and at low cost is of great interest in the fields of clinical diagnostics, environmental monitoring, food safety and security. This research investigates the behaviour of different cell types on nanostructured architectures. The development of cell‐based assays using bioimpedance devices has the potential of screening anti‐cancer drugs; these have a potential impact for developing new techniques and tools for the analysis of cells in the bio‐pharma industry. Gold impedance electrodes have been successfully fabricated for impedance measurement on cells cultured on the electrode surface which was modified with gold nanopillars with a height of 60 nm and 150 nm diameter in a highly ordered layout thanks to the e‐beam lithography technique. This article investigates the effects on the sensitivity achieved with the ECIS (Electric Cell‐substrate Impedance Spectroscopy) measurements while monitoring the cytotoxicity of two different drugs (Antrodia Camphorata extract and Nicotine) on different cell lines (HeLa, A549 and BALBc 3T3) cultured on the nanostructured devices. The change of morphology of cells growing on the nanostructured electrodes was also investigated through SEM imaging.