Information content in organic molecules: Brownian processing at low levels

The informatic properties of organic molecules have been the subject of our research during the past several years. In the present study, we investigate the lower levels wherein information is expressed via Brownian processing. Organic molecules are like other electronic devices in that their informatic details depend on the operating level in question. The low and high levels are distinguished (among other ways) by the amount of work they require for processing. In this work, a Brownian model is developed by which the low-level content of a chemical system can be quantified. The model is demonstrated for diverse organic molecules. In so doing, several scaling properties of low-level information are illustrated. In addition, the correspondence traits regarding the different levels are examined. Molecular information represents a capacity for work control such as during chemical reactions. Thus, the information expressed at low levels is examined in connection with the reaction pathway selectivity of organic compounds.     

Information content in organic molecules: quantification and statistical structure via Brownian processing

Information and organic molecules were the subject of two previous works from this lab (Graham and Schacht, J. Chem. Inf. Comput. Sci. 2000, 40, 187; Graham, J. Chem. Inf. Computer Sci. 2002, 42, 215). We delve further in this paper by examining organic structure graphs as objects of Brownian information processing. In so doing, tools are introduced which quantify and correlate molecular information to several orders. When the results are combined with energy data, an enhanced informatic view of covalent bond networks is obtained. The information properties of select molecules and libraries are illustrated. Notably, Brownian processing accommodates all possible compounds and libraries, not just ones registered in chemical databases. This approach establishes important features of the statistical structure underlying carbon chemistry.     

Information content in organic molecules: aggregation states and solvent effects

The information content of organic molecules has been the subject of a series of papers from this lab. The investigation continues as aggregation states and some of their attendant solvent effects are examined. An organic molecule operates as an information source not in a vacuum but rather in conjunction with one or more solvent compounds. Accordingly, solvents (ethanol, acetone, etc.) furnish both a source and a channel that modify molecular information. In this paper, Brownian techniques are developed further so as to quantify molecular information with aggregation states taken into account. Several applications follow concerning organic acid ionization in solution, tautomerization reactions, and molecular activity at biological receptor sites. The goal is to advance Brownian processing as a means of probing molecular information and its communication. To this end, practical examples are offered relating structure and function along informatic lines.     

Fast, easy, clean chemistry by using water as a solvent and microwave heating: the Suzuki coupling as an illustration

Water is an excellent solvent for organic chemistry and microwave heating offers a very efficient way of heating reaction mixtures. In this article, by focusing on the Suzuki reaction, it is shown how these two methods, used alone or together, can impact modern synthetic chemistry, making reactions faster, easier and cleaner.     

光催化有机物偶联/芳构化放氢反应研究进展

光催化氧化还原反应具有绿色、高效、安全等优势,已经在有机化学中得到广泛关注.介绍了基于光催化的偶联/芳构化放氢反应,通过使用光催化剂/催化剂的双催化体系,可用于光催化有机碳-碳和碳-杂原子成键反应,且反应中氢气是唯一的副产物.强调了有机光氧化还原体系的构建与催化机理.     

Quantum chemical methods and their applications to chemical reactions

This review is concerned with the impact of quantum chemistry on chemical reactions. Starting from the mid-sixties it focusses on those developments which have enabled us to predict essential features of simple chemical reactions. Thus model theories and computational methods are presented which provide the tools for these predictions. Then procedures to characterize potential surfaces and search methods for reaction paths are described. It is also attempted to relate these features to the terminology of the experimentalist. Finally a systematic survey of the main types of reaction (rearrangement, addition, elimination, substitution) is given.     

质谱实时监测有机化学反应的研究进展

质谱法是一种能够提供物质丰富结构信息的谱学方法,广泛应用于有机物的测定、有机化学反应的监测以及有机化学反应机理的研究中。本文综述了质谱实时监测缩合反应、取代反应、氧化反应、环化反应、加成反应、偶联反应、自由基反应等有机化学反应的研究进展。     

Laboratory studies of organic peroxy radical chemistry: an overview with emphasis on recent issues of atmospheric significance

Organic peroxy radicals (often abbreviated RO(2)) play a central role in the chemistry of the Earth's lower atmosphere. Formed in the atmospheric oxidation of essentially every organic species emitted, their chemistry is part of the radical cycles that control the oxidative capacity of the atmosphere and lead to the formation of ozone, organic nitrates, organic acids, particulate matter and other so-called secondary pollutants. In this review, laboratory studies of this peroxy radical chemistry are detailed, as they pertain to the chemistry of the atmosphere. First, a brief discussion of methods used to detect the peroxy radicals in the laboratory is presented. Then, the basic reaction pathways - involving RO(2) unimolecular reactions and bimolecular reactions with atmospheric constituents such as NO, NO(2), NO(3), O(3), halogen oxides, HO(2), and other RO(2) species - are discussed. For each of these reaction pathways, basic reaction rates are presented, along with trends in reactivity with radical structure. Focus is placed on recent advances in detection methods and on recent advances in our understanding of radical cycling processes, particularly pertaining to the complex chemistry associated with the atmospheric oxidation of biogenic hydrocarbons.     

记忆口诀在有机化学学习中的应用

Organic chemistry is an important course for chemistry related disciplines but it is difficult to study. With the diverse reaction conditions and types, pithy formulas were suggested to help memorization. During the programming of the pithy formulas, the various meanings of Chinese characters and the association ability of human brain were fully considered, making the pithy formulas simple and easy to read. The scattered information was organized, making the abstract reactions readily remembered. The pithy formulas can not only get beginners familiar with organic chemistry, but also be useful for knowledge system constructing, helping knowledge comprehension and application lifelong.     

Enantioselective Organocatalysis

The last few years have witnessed a spectacular advancement in new catalytic methods based on metal-free organic molecules. In many cases, these small compounds give rise to extremely high enantioselectivities. Preparative advantages are notable: usually the reactions can be performed under an aerobic atmosphere with wet solvents. The catalysts are inexpensive and they are often more stable than enzymes or other bioorganic catalysts. Also, these small organic molecules can be anchored to a solid support and reused more conveniently than organometallic/bioorganic analogues, and show promising adaptability to high-throughput screening and process chemistry. Herein we focus on four different domains in which organocatalysis has made major advances: 1) The activation of the reaction based on the nucleophilic/electrophilic properties of the catalysts. This type of catalysis has much in common with conventional Lewis acid/base activation by metal complexes. 2) Transformations in which the organic catalyst forms a reactive intermediate: the chiral catalyst is consumed in the reaction and requires regeneration in a parallel catalytic cycle. 3) Phase-transfer reactions: The chiral catalyst forms a host-guest complex with the substrate and shuttles between the standard organic solvent and the second phase (i.e. a solid, aqueous, or fluorous phase in which the organic transformation takes place). 4) Molecular-cavity-accelerated asymmetric transformations: the catalyst can select between competing substrates, depending on size and structure criteria. The rate acceleration of a given reaction is similar to the Lewis acid/base activation and is the consequence of the simultaneous action of different polar functions. Herein it is shown that organocatalysis complements rather than competes with current methods. It offers something conceptually novel and opens new horizons in synthesis.     

Photochemical Rearrangements and Fragmentations of Benzene Derivatives and Annelated Arenes

In this article the numerous intramolecular reactions of electronically excited benezene derivatives, which in many instances are only mentioned in original papers, are systematically analyzed and arranged according to reaction types. All known reaction types can be classified, and subdivided into reactions of the benzene ring (ionization, ring opening, ring alteration), reactions with participation of side chains (α-, β-, γ-cleavage, homolysis, heterolysis), reactions of substituents with side chains (cyclization, dealkylation, cleavage of protective groups), and reactions of side chains with the aromatic ring (substitution, addition, dearomatization, cyclization). The selectivity of the energetically feasible competing reactions is primarily determined by geometric factors. Applications of the empirical effects are numerous and varied in preparative organic chemistry. Many of the reactions under discussion are already utilized industrially (e.g. in photochromism, UV stabilization, photography, information storage, printing, coating and polymer technology, and pharmacy).     

Internet上的有机化学软件

综述了Internet上近年来的新的六大类型的有机化学软件的基本内容、特点与网址。     

Azide rearrangements in electron-deficient systems

The azide group has a diverse and extensive role in organic chemistry, reflected in the power of azide anion as a strong nucleophile, the role of organic azides as excellent substrates for cycloaddition reactions, the uses of azides as precursors of amines and nitrenes, and azide rearrangements known as the Curtius and Schmidt reactions. In recent years the scope of the Schmidt reaction has begun to be explored in depth, so that it now represents an important reaction in synthetic chemistry. This tutorial review analyses and summarises key recent developments in the field of Schmidt reactions.     

Catalysis for green chemistry: ultrahigh loaded mesoporous solid acids

The development and applications in organic synthesis of new mesoporous solid catalysts is proving to be one of the most interesting and important subjects in green and sustainable chemistry. With high levels of organic functionality on the surface, these materials which can be considered as inorganic–organic hybrids, are compatible even with very low polarity organic media and can be used in various types of organic reactions. Some of the most interesting are solid acids such as solid sulfonic acid and solid peracids which are safe and environmentally less-damaging alternatives to conventional reagents.     

Recent advancements in palladium-catalyzed reactions involving molecular oxygen

Oxidation reactions have significant value in organic chemistry, having been in focus continuously due to the high efficiency in building up molecular complexity. In the past few decades, transition metal-catalyzed oxidation reactions have been significantly explored and have played important roles in organic synthesis. Compared to the widely-used oxidants, such as inorganic salts, peroxides, hypervalent iodine reagents and quinones, molecular oxygen (O₂), which is natural, inexpensive, and environmentally friendly, is a highly appealing oxidant in academic and industry area for green and sustainable chemistry. Recently, significant advances have been made in palladium-catalyzed reactions using O₂ as the oxidant. This critical review highlights some of the recent developments in molecular oxygen-involved Pd-catalyzed oxidation reactions with a focus on mechanistic strategies and new reaction developments.     

REACTIONS OF DERIVATIVES OF PHOSPHORUS ACIDS WITH CARBONYL COMPOUNDS ACTIVATED BY ELECTRONEGATIVE GROUPS

Abstract

The Arbuzov reaction results in the synthesis of various phosphonic esters and is of great importance for the further development of the chemistry of organophosphorus compounds. Investigations of recent decades have shown that, besides halogen-containing organic compounds, different types of organic compounds of the electrophilic type which do not contain halogen atoms are capable of entering this reaction. Reactions with carbonyl compounds are especially interesting. This report presents the results of reactions of derivatives of tricoordinated phosphorus (trialkyl phosphites, amidophosphites, ester anhydrides, isocyanate phosphites) with carbonyl compounds. Special emphasis was placed on studying the reactions with carbonyl compounds activated by some electronegative groups. The regularities and mechanisms of these reactions were investigated depending on the structure of the carbonyl compounds, the derivatives of tricoordinated phosphorus and the reaction conditions.     

Flash chemistry: fast chemical synthesis by using microreactors

This concept article provides a brief outline of the concept of flash chemistry for carrying out extremely fast reactions in organic synthesis by using microreactors. Generation of highly reactive species is one of the key elements of flash chemistry. Another important element of flash chemistry is the control of extremely fast reactions to obtain the desired products selectively. Fast reactions are usually highly exothermic, and heat removal is an important factor in controlling such reactions. Heat transfer occurs very rapidly in microreactors by virtue of a large surface area per unit volume, making precise temperature control possible. Fast reactions often involve highly unstable intermediates, which decompose very quickly, making reaction control difficult. The residence time can be greatly reduced in microreactors, and this feature is quite effective in controlling such reactions. For extremely fast reactions, kinetics often cannot be used because of the lack of homogeneity of the reaction environment when they are conducted in conventional reactors such as flasks. Fast mixing using micromixers solves such problems. The concept of flash chemistry has been successfully applied to various organic reactions including a) highly exothermic reactions that are difficult to control in conventional reactors, b) reactions in which a reactive intermediate easily decomposes in conventional reactors, c) reactions in which undesired byproducts are produced in the subsequent reactions in conventional reactors, and d) reactions whose products easily decompose in conventional reactors. The concept of flash chemistry can be also applied to polymer synthesis. Cationic polymerization can be conducted with an excellent level of molecular-weight control and molecular-weight distribution control.     

Ketenes in polymer-assisted synthesis

Since its inception, ketene chemistry has developed into a unique and well-established source of useful transformations for conventional synthetic organic chemistry. It is, therefore, not surprising that soon after their movement from the realm of peptide and peptoid libraries to that of small molecules, combinatorial chemists have sought the benefits of ketene chemistry to satisfy their own synthetic needs. The ability of these versatile molecules to undergo reactions with nucleophiles, and to participate in cycloadditions and cyclocondensations, has been utilized for the preparation of diverse heterocyclic compounds, and has added to the advantages of polymer-assisted synthesis for rapid purification. Different types of ketenes and different methods for their generation have been involved, which illustrates the potential diversity of the chemistry. There is now a better grasp of the effect of the fragility of these sometimes transient molecules on the reactions involving solid supports, and this augurs well for the application of some of the more recent developments in ketene chemistry to the generation of small-molecule libraries.     

Fischer Carbene Complexes as Chemical Multitalents: The Incredible Range of Products from Carbenepentacarbonylmetal alpha,beta-Unsaturated Complexes

The metal carbene complexes, discovered by E. O. Fischer at the start of the 1960s and carrying his name, have since proved themselves to be irreplaceable building blocks for organic synthesis. In particular, since the discovery of the D?tz reaction, a formal cycloaddition of Fischer alpha,beta-unsaturated carbene complexes to alkynes with CO insertion, this area of chemistry has become increasingly interesting to organic chemists. In spite of the considerable diversity of reactions performed with these complexes, proper selection of substrates and careful adjustment of the reaction conditions have allowed, in most cases the perfectly selective preparation of individual compounds of this enormous range of products. The spectrum of new successes begins with the conventional Diels-Alder reaction of alkynylcarbene complexes and the formal regioselective [3+2] cycloaddition of alkenylcarbene complexes to alkynes. It extends much further, however, from cascade reactions with the formation of oligofunctional and oligocyclic products of impressive molecular complexity to complex, formal [3+6] cocyclizations in which six bonds are formed in a single operational step. Beyond doubt, the methodological arsenal of preparative organic chemistry cannot be imagined any more without the valuable transformations of the Fischer carbene complexes; it only remains to be seen whether one or other of the numerous new types of cocyclization products of these complexes can establish itself as a lead structure in the search for biologically active compounds.