Franck-Condon factors within damped displacement harmonic oscillators: Solvent-enhanced absorption and fluorescence spectra

Damped harmonic oscillators that take into account local-mode nuclear vibrations interacting with solvent molecules are developed into Franck-Condon factors within displaced harmonic oscillator approximation. This is practically done by scaling an unperturbed Hessian matrix that represents local modes of force constants for molecules in a gaseous phase, and then by diagonalizing the perturbed Hessian matrix it results in direct modification of Huang–Rhys factors which represent normal modes of solute molecule perturbed by solvent environment. For highly symmetric polycyclic aromatic hydrocarbon molecules in which hydrogen atom vibrations in a solution can be scaled equally, one-set scaling parameters constructed into damped Franck-Condon factors can reproduce solvent-enhanced absorption and fluorescence spectra in solution. However, for low symmetry molecules with atoms other than hydrogen and carbon atoms, multi-set scaling parameters constructed into damped Franck-Condon factors can also reproduce solvent-enhanced absorption and fluorescence spectra in solution. Examples for high symmetry perylene in benzene solution with one-set scaling parameters and for low symmetry carbazole in n-hexane solution with multi-set scaling parameters are given, in both cases, the present damped Franck-Condon simulation can reproduce solvent-enhanced absorption and fluorescence spectra in solution.     

The effect of water on the microstructure of 1-butyl-3-methylimidazolium tetrafluoroborate/TX-100/benzene ionic liquid microemulsions

The ionic liquid (IL) 1-butyl-3-methylimidazolium tetrafluoroborate ([bmim][BF4]) forms nonaqueous microemulsions with benzene with the aid of nonionic surfactant TX-100. The phase diagram of the ternary system was prepared, and the microstructures of the microemulsion were recognized. On the basis of the phase diagram, a series of ionic liquid-in-oil (IL/O) microemulsions were chosen and characterized by dynamic light scattering (DLS), which shows a similar swelling behavior to typical water-in-oil (W/O) microemulsions. The existence of IL pools in the IL/O microemulsion was confirmed by UV/Vis spectroscopic analysis with CoCl2 and methylene blue (MB) as the absorption probes. A constant polarity of the IL pool is observed, even if small amounts of water are added to the microemulsion, thus suggesting that the water molecules are solubilized in the polar outer shell of the microemulsion, as confirmed by FTIR spectra. 1H NMR spectroscopic analysis shows that these water molecules interact with the electronegative oxygen atoms of the oxyethylene (OE) units of TX-100 through hydrogen-bonding interactions, and the electronegative oxygen atoms of the water molecules attract the electropositive imidazolium rings of [bmim][BF4]. Hence, the water molecules are like a glue that stick the IL and OE units more tightly together and thus make the microemulsion system more stable. Considering the unique solubilization behavior of added water molecules, the IL/O microemulsion system may be used as a medium to prepare porous or hollow nanomaterials by hydrolysis reactions.     

NMR Study of Pore Surface and Size in a Mesoporous Material FSM-16

Surface structure, pore size distribution and pore wall thickness of a mesoporous material FSM-16 have been studied by X-ray powder diffraction (XRD), ^lH and ²⁹Si MAS NMR and ¹H liquid-state NMR, and by applying surface silylation as a probe. Concentrations of surface hydroxyl groups for FSM-16 are estimated from ²⁹Si and ¹H MAS NMR, which are about 3×l0²¹ g^-1, corresponding to approximately 3 nm^-2. O₂ molecules contribute to ²⁹Si spin-lattice relaxation of Q² and Q³ as well as Q⁴, suggesting thin wall thickness. ¹H MAS NMR spectra indicate the presence of isolated and hydrogen-bonded hydroxyl groups. Both hydroxyl groups are silylated, where the silylated fraction is about 50%. The spatial distribution of surface hydroxyl groups is estimated from the line width in ¹H static spectra. A rather homogeneous distribution is demonstrated in one of the samples. The sample with less homogeneous distribution has a larger affinity for moisture. Pore size and pore wall thickness were determined by ¹H NMR measurements on water saturated FSM-16 samples, which are in good agreement with literature values obtained by N₂ adsorption isotherms and transmission electron micrographs on a similar sample. In benzene saturated samples, a non-freezing surface layer of benzene is much thicker than that of water, which indicates a stronger interaction between benzene and the FSM-16 surface.     

Role of solubilized water in the reverse ionic liquid microemulsion of 1-butyl-3-methylimidazolium tetrafluoroborate/TX-100/benzene

The ionic liquid (IL) 1-butyl-3-methylimidazolium tetrafluoroborate (bmimBF4) can form nonaqueous microemulsions with benzene by the aid of nonionic surfactant TX-100. The effect of water on ionic liquid-in-oil (IL/O) microemulsions was studied, and it was shown that the addition of small amount of water to the IL microemulsion contributed to the stability of microemulsion and thus increased the amount of solubilized bmimBF4 in the microemulsion. The conductivity measurements also showed that the attractive interactions between IL microdroplets were weakened, that is, the IL/O microemulsion becomes more stable in the present of some water. Fourier transform IR was carried out to analyze the states of the added water, and the result showed that these water molecules mainly behaved as bound water and trapped water, indicating that the water molecules are located in the palisade layers of the IL/O microemulsion. Furthermore, 1H NMR and 19F NMR spectra suggested that the added water molecules built the hydrogen binding network of imidazolium cations and H2O, BF4- anion and H2O, and at the same time the electronegative oxygen atoms of the oxyethylene units of TX-100 and water in the palisade layers, which made the palisade layers more firm and thus increased the stability of the microemulsion. The study can help in further understanding the formation mechanism of microemulsions. In addition, the characteristic solubilization behavior of the added water can provide an aqueous interface film for hydrolysis reactions and therefore may be used as an ideal medium to prepare porous or hollow nanomaterials.     

多巴胺盐酸盐与二甲亚砜的相互作用研究

使用核磁共振技术、密度泛函理论(DFT)和分子中原子(AIM)理论,研究了多巴胺盐酸盐(DH)与二甲亚砜(DMSO)的相互作用。结果表明,DH中酚羟基和氨基正离子上的氢原子、苯环上位于酚羟基和侧链之间碳上的氢原子,甚至侧链上与苯环直接相连的亚甲基上的氢原子都可与DMSO中的氧原子形成分子间氢键。     

Study of reverse micelles of di-isobutyl-phenoxy-ethoxy-ethyl-dimethyl-benzyl ammonium methacrylate in benzene by nuclear magnetic resonance spectroscopy

(1)H NMR spectroscopy was used to investigate the aggregation of the surfactant di-isobutyl-phenoxy-ethoxy-ethyl-dimethyl-benzyl ammonium methacrylate (Hyamine-M) in benzene. Adding water makes swollen reverse micelles (microemulsion droplets). The droplets also contain cadmium ions and the sodium salt of the methacrylic acid. The critical micelle concentration of Hyamine-M was determined by NMR to be 3.95 mM under the current conditions. Two-dimensional NMR NOESY spectra were used to study the conformation of the surfactant in the micelle and the spatial localization of water and counterions. We found that the surfactant molecules are folded with both phenyl fragments oriented toward the micelle exterior and the oxyethylene and NCH(3) groups in the micelle core. The water molecules and counterions are distributed around the surfactant polar groups in the micelle interior and penetrate up to both aromatic rings. The investigated system can be further utilized as a microemulsion matrix for the synthesis of cadmium-containing semiconductor nanocrystals, eventually capped with a polymer shell, or of polymer nanoparticles.     

Molecular distribution at the interface in an aqueous triethylamine solution. <Superscript>1</Superscript>H NMR

The ¹H NMR spectra in a binary aqueous triethylamine solution are recorded with a lower critical point of the liquid–liquid phase transition. It is found that, above the critical temperature the ¹H NMR spectra of water and triethylamine molecules in the phase with a predominant content of triethylamine molecules are characterized by an inhomogeneous broadening. It can be supposed that the found broadening is due to the features of the molecular distribution at the interface.     

Synthesis and properties of water-soluble asterisk molecules

An asterisk is comprised of six semirigid arms projecting from a benzene nucleus. In the case at hand, asterisks were synthesized with one, two, or three aromatic rings (connected by sulfur atoms) in each of the six arms. A phosphomonoester at the termini of each arm solubilized the asterisks in water. The colloidal properties of these amphiphilic molecules were investigated by UV-vis and fluorescence spectroscopy, calorimetry, light scattering, surface tensiometry, and pulse-gradient spin-echo NMR. Solubility, solubilization, metal binding, and micelle "seeding" experiments were also carried out. Chain-conformation and supramolecular assembly into remarkable molecular "scrolls" were investigated by X-ray analysis and electron microscopy, respectively. One of the more interesting properties of the asterisks is that they remain monomeric in water despite having as many as 19 hydrophobic aromatic rings exposed to the water. The reasons for this behavior, and the possibility of exploiting it for constructing enzyme models free from aggregation equilibria, are discussed.     

Structure, modelling and dynamic behaviour of aza- and azaoxamacrocyclic ligands derived from (R,R)-1,2-diaminocyclohexane

Investigations into the conformational behaviour of macrocyclic ligands 5 and 6 derived from (R,R)-1,2-diaminocyclohexane have been undertaken using molecular modelling, single crystal X-ray diffraction and variable temperature 1H NMR spectroscopy. These have revealed that the lowest energy conformers in both cases do not possess the expected C2-element of symmetry, which can only be accessed at higher temperatures. Instead both molecules exist as C1-conformers at room temperature and in the solid state. In solution a range of dynamic exchange processes is observed which result, in part from the inherent strain in these fused bicyclic systems. An unexpected but characteristic feature of the C1-symmetric conformers is highlighted by the presence of a signal at unexpectedly low field in their 1H NMR spectra due to the interaction of two of the sulfonyl oxygen atoms with one of the bridgehead hydrogen atoms.     

Interaction of hydronium ion with dibenzo-18-crown-6: NMR, IR, and theoretical study

Interaction of dibenzo-18-crown-6 (DBC) with H 3O (+) (HP) in nitrobenzene- d 5 and dichloromethane- d 2 was studied by using (1)H and (13)C NMR spectra and relaxations, FTIR spectra, and quantum chemical DFT calculations. NMR shows that the DBC*HP complex is in a dynamic equilibrium with the reactants, the equilibrium constant K being 0.66 x 10 (3), 1.16 x 10 (4), and 1.03 x 10 (4) L x mol (-1) in CD 2Cl 2, nitrobenzene, and acetonitrile, respectively. The complex appears to have a C 2 v symmetry in NMR, but FTIR combined with DFT normal mode calculations suggest that such high symmetry is only apparent and due to exchange averaging of the structure. FTIR spectra as well as energy-optimized DFT calculations show that the most stable state of the complex in solution is that with three linear hydrogen bonds of HP with one CH 2-O-CH 2 and two Ar-O-Ar oxygen atoms. The structure is similar to that found in solid state but adopts a somewhat different conformation in solution. The dynamics of exchange between bound and free DBC was studied by NMR transverse relaxation. It was found to be too fast to give reproducible results when measured with the ordinary CPMG sequence or its variant DIFTRE removing residual static dipolar interaction, but it could be established by rotating-frame measurements with high intensity of the spin-lock field. The correlation time of exchange was found to be 5.6 x 10 (-6) and 3.8 x 10 (-6) s in dichloromethane and nitrobenzene, respectively. Such fast exchange can be explained by cooperative assistance of present water molecules.     

稀土硝酸盐与1,1,1-三(4′-二苯胺甲酰基-2′-氧杂丁基)丙烷配合物的合成及谱学性质

三角架型配体由于其独特的配位方式而具有许多优良的物理和化学性质 ,如能稳定高氧化态的过渡金属离子[1 3] ,用作优良的电极活性物质[4] ,具有生物活性[5] 等 .因此近十余年来对该类配合物的研究一直是配位化学研究领域的一个重要部分 .但到目前为止 ,对具有三角架结构的三酰胺型开链冠醚的研究却很少 ,且主要集中于研究它与过渡金属和碱金属离子的相互作用及其性质[4,5] ,有关该类配体与稀土离子的配位形式及性质的研究则更少[6] .为了进一步研究该类配体与稀土离子的配位能力及所形成配合物的性质 ,我们参照文献 [5]方法 ,合成出配体 1 ,…     

The structure of the H3O+ hydronium ion in benzene

Infrared, X-ray structural, 1H NMR, and computational evidence for pi-solvation of H3O+ by benzene molecules is presented. A salt with a discrete [H3O.3benzene]+ cation can be isolated using a very weakly interacting carborane counterion, CHB11Cl11-. pi-Arene solvation of H3O+ explains the solubility of this salt in benzene solution. Similar results are indicated for the "Zundel-type" H5O2+ ion. These findings suggest structures for the active protonating species when strong acids are used as catalysts in arene solvents containing trace water. They are also relevant to structures that may be present in biological proton transport.     

Complexation of lanthanides(III), americium(III), and uranium(VI) with bitopic N,O ligands: an experimental and theoretical study

New functionalized terpyridine-diamide ligands were recently developed for the group actinide separation by solvent extraction. In order to acquire a better understanding of their coordination mode in solution, protonation and complexation of lanthanides(III), americium(III), and uranium(VI) with these bitopic N,O-bearing ligands were studied in homogeneous methanol/water conditions by experimental and theoretical approaches. UV-visible spectrophotometry was used to determine the protonation and stability constants of te-tpyda and dedp-tpyda. The conformations of free and protonated forms of te-tpyda were investigated using NMR and theoretical calculations. The introduction of amide functional groups on the terpyridine moiety improved the extracting properties of these new ligands by lowering their basicity and enhancing the stability of the corresponding 1:1 complexes with lanthanides(III). Coordination of these ligands was studied by density functional theory and molecular dynamics calculations, especially to evaluate potential participation of hard oxygen and soft nitrogen atoms in actinide coordination and to correlate with their affinity and selectivity. Two predominant inner-sphere coordination modes were found from the calculations: one mode where the cation is coordinated by the nitrogen atoms of the cavity and by the amide oxygen atoms and the other mode where the cation is only coordinated by the two amide oxygen atoms and by solvent molecules. Further simulations and analysis of UV-visible spectra using both coordination modes indicate that inner-sphere coordination with direct complexation of the three nitrogen and two oxygen atoms to the cation leads to the most likely species in a methanol/water solution.     

A new cytosine-copper paramagnetic complex spectroscopic study

Two different copper complexes with cytosine molecules are formed in the process of crystal growth from the aqueous solution with traces of copper. One of them is diamagnetic, turning into paramagnetic upon ionizing irradiation (complex I). The other, the subject of the present study, is paramagnetic (complex II) as prepared. For complex II, EPR spectra demonstrate that the copper ion is coordinated with one nitrogen atom and three oxygen atoms. On the basis of the detailed EPR spectroscopic analysis and quantum-chemical calculations (in the DFT approach) the model of the complex has been proposed. Both experimental data and the theoretical results support the model with the copper atom, located between the two cytosine ribbons, ligated to a nitrogen and an oxygen atom from two opposing cytosine molecules and two oxygen atoms from water molecules. For complex II the Raman spectra demonstrated concerted restructuring of the hydrogen bonding in the cytosine crystal matrix upon insertion of copper ions.     

Quadrupole central transition 17O NMR spectroscopy of biological macromolecules in aqueous solution

We demonstrate a general nuclear magnetic resonance (NMR) spectroscopic approach in obtaining high-resolution (17)O (spin-5/2) NMR spectra for biological macromolecules in aqueous solution. This approach, termed quadrupole central transition (QCT) NMR, is based on the multiexponential relaxation properties of half-integer quadrupolar nuclei in molecules undergoing slow isotropic tumbling motion. Under such a circumstance, Redfield's relaxation theory predicts that the central transition, m(I) = +1/2 ? -1/2, can exhibit relatively long transverse relaxation time constants, thus giving rise to relatively narrow spectral lines. Using three robust protein-ligand complexes of size ranging from 65 to 240 kDa, we have obtained (17)O QCT NMR spectra with unprecedented resolution, allowing the chemical environment around the targeted oxygen atoms to be directly probed for the first time. The new QCT approach increases the size limit of molecular systems previously attainable by solution (17)O NMR by nearly 3 orders of magnitude (1000-fold). We have also shown that, when both quadrupole and shielding anisotropy interactions are operative, (17)O QCT NMR spectra display an analogous transverse relaxation optimized spectroscopy type behavior in that the condition for optimal resolution depends on the applied magnetic field. We conclude that, with the currently available moderate and ultrahigh magnetic fields (14 T and higher), this (17)O QCT NMR approach is applicable to a wide variety of biological macromolecules. The new (17)O NMR parameters so obtained for biological molecules are complementary to those obtained from (1)H, (13)C, and (15)N NMR studies.     

Bis{2-[dimethylamino)methyl]phenyl}silverlithium,a tetranuclear organometallic compound with bridging aryl groups between silver and lithium

Bis{2-[(dimethylamino)methyl]phenyl}silverlithium has been prepared and characterized. Molecular weight determinations, and ¹³C NMR and ¹H NMR spectra reveal that the compound exists (in benzene) as a tetranuclear mixed metal cluster containing aryl groups bridging the silver and lithium atoms. Silver-proton, silver-carbon and lithium-carbon couplings have been observed in the NMR spectra of this compound.     

1H NMR, 13C NMR, and computational DFT studies of the structure of 2-acylcyclohexane-1,3-diones and their alkali metal salts in solution

1H and 13C NMR spectra of 2-acyl-substituted cyclohexane-1,3-diones (acyl = formyl, 1; 2-nitrobenzoyl, 2; 2-nitro-4-trifluoromethylbenzoyl, 3) and lithium sodium and potassium salts of 1 have been measured. The compound 3, known as NTBC, is a life-saving medicine applied in tyrosinemia type I. The optimum molecular structures of the investigated objects in solutions have been found using the DFT method with B3LYP functional and 6-31G** and/or 6-311G(2d,p) basis set. The theoretical values of the NMR parameters of the investigated compounds have been calculated using GIAO DFT B3LYP/6-311G(2d,p) method. The theoretical data obtained for compounds 1-3 have been exploited to interpret their experimental NMR spectra in terms of the equilibrium between different tautomers. It has been found that for these triketones an endo-tautomer prevails. The differences in NMR spectra of the salts of 1 can be rationalized taking into account the size of the cation and the degree of salt dissociation. It seems that in DMSO solution the lithium salt exists mainly as an ion pair stabilized by the chelation of a lithium cation with two oxygen atoms. The activation free energy the of formyl group rotation for this salt has been estimated to be 51.5 kJ/mol. The obtained results suggest that in all the investigated objects, including the free enolate ions, all atoms directly bonded to the carbonyl carbons lie near the same plane. Some observations concerning the chemical shift changes could indicate strong solvation of the anion of 1 by water molecules. Implications of the results obtained in this work for the inhibition mechanism of (4-hydroxyphenyl) pyruvate dioxygenase by NTBC are commented upon.     

Characterization of small combinatorial chemistry libraries by (1)H NMR. Quantitation with a convenient and novel internal standard

A novel silane standard, 1,4-bis(trimethylsilyl)benzene (BTMSB), is introduced for the generic quantitation of small organic molecules in DMSO-d(6) solution by (1)H NMR. This standard is an easily weighable solid and is stable for at least 1 month in DMSO solution, and its (1)H NMR spectrum contains a strong singlet in a region usually free of signals. With a set of certified standards, concentration determination with about 2% precision and accuracy is verified after solution preparation with fully automated procedures, thus making very effective the characterization of small combinatorial chemistry libraries for identity and purity when combined with other physicochemical or biochemical tests. As an example, for a set of about 400 compounds, results of (1)H NMR characterization are compared to the more customary LC-UV-MS method. NMR and MS data agree for identity on the vast majority of cases (84% positive and 5% negative), whereas the remaining cases (11%) are marked as highly impure only after NMR spectra analysis. Most importantly, determination of concentration rather than that of relative purity appears the right choice for a correct evaluation of biochemical potency.     

Characterization of the metal-organic framework compound Cu3(benzene 1,3,5-tricarboxylate)2 by means of 129Xe nuclear magnetic and electron paramagnetic resonance spectroscopy

129Xe NMR measurements of adsorbed xenon are shown for the first time to be a suitable tool to characterize the porosity and the properties of the metal-organic framework Cu3(BTC)2(H2O)3 (BTC = benzene 1,3,5-tricarboxylate). The NMR experiments are performed at room temperature and over a wide range of xenon pressure and on two different synthesized Cu3(BTC)2 samples. 129Xe NMR results reveal that in dependence on the kind of the synthesis pathway either one or two signals are observed which can be attributed to two kinds of fast exchange of xenon atoms in two pores with different pore sizes. Coadsorption experiments of xenon and ethylene demonstrate that the xenon atoms prefer to fill the greater pores of the material because the smaller pores are occupied with residual molecules from the synthesis procedure and additionally adsorbed ethylene. Besides the NMR experiments a series of electron paramagnetic resonance (EPR) measurements are performed to estimate the state of copper having a strong influence on the chemical shift of the adsorbed xenon. The EPR experiments demonstrate that spin exchange between the interconnected copper dimers is taking place across the BTC linker molecules in the Cu3(BTC)2 framework.     

Sensitive high resolution inverse detection NMR spectroscopy of proteins in the solid state

A new indirect detection scheme for obtaining (15)N/(1)H shift correlation spectra in crystalline proteins is described. Excellent water suppression is achieved without the need for pulsed field gradients, and using only a 2-step phase cycle. Careful attention to overall NMR instrument stability was found critical for obtaining the best resolution and sensitivity. Magnetic dilution by deuteration of the protein in combination with high-speed magic angle spinning produces (1)H resonances averaging only 0.22 ppm in width, and in some cases lines as narrow as 0.17 ppm are obtained. In application to two different polymorphs of ubiquitin, structure dependent differences in both (15)N and (1)H amide chemical shifts are observed. In one case, distinct shifts for different molecules in the asymmetric unit are seen, and all differ substantially from solution NMR shifts. A gain of 7 in sensitivity makes the method competitive with solution NMR as long as nanocrystalline samples are available.