Real-time multicolor DNA detection with chemoresponsive diffraction gratings and nanoparticle probes

We report a real-time DNA detection method that utilizes single-strand DNA-modified nanoparticle probes and micropatterned chemoresponsive diffraction gratings interrogated simultaneously at multiple laser wavelengths. The surface-bound nanoparticle probe based assay with the chemoresponsive diffraction grating signal transduction scheme results in an experimentally simple DNA detection protocol, displaying attributes of both detection methodologies: the high sensitivity and selectivity afforded by nanoparticle probes and the experimental simplicity, wavelength-dependent resonant enhancement features, and miniaturization potential provided by the diffraction-based sensing technology.     

Development and application of patterned conducting polymer thin films as chemoresponsive and electrochemically responsive optical diffraction gratings

We describe the preparation of two-dimensionally patterned polyaniline (PANI) thin films via microtransfer molding and electropolymerization techniques. This procedure yields reproducible conducting polymer patterns with excellent feature periodicity, making them useful as diffraction gratings. The fabricated polymer gratings were characterized via tapping-mode atomic force microscopy. Spectroelectrochemistry was used to characterize the optical properties associated with various intrinsic PANI redox states. In accordance with the Kramers–Kronig relation for change-in-absorptivity and change-in-index-of-refraction, electrochemically induced changes in refractive index (detected via changes in diffraction efficiency) were observed to coincide with electrochemically-induced changes in the PANI electronic absorption spectrum. In addition, the higher oxidation states of PANI and the associated changes in refractive index proved accessible via chemical oxidation. Beyond the novelty of a chemically-switchable transmission grating, the response of this system points to the possibility of developing diffraction-based chemical sensing schemes.     

Electrochemically tunable surface-plasmon-enhanced diffraction gratings and their (bio-)sensing applications

Electrochemistry was combined with surface-plasmon-enhanced diffraction (ESPD) to investigate a redox-switchable polymer grating and its (bio-)sensing applications. Patterned arrays of polyaniline (PANI)/ poly(styrenesulfonate) (PSS) were fabricated by the combination of electropolymerization and micromolding in capillaries (MIMIC) and were used as an optical grating for surface-plasmon-enhanced diffraction experiments. The diffraction efficiency (DE) could be tuned by changes in the applied potential, and by changes in the pH of the surrounding solution (dielectric medium). The response of the DE to the pH depends strongly on the redox state of the PANI/PSS grating. If the polymer grating is mainly in its reduced state, the DE shows a linear dependence on the pH. The DE of the PANI/PSS grating can also be modulated by an electrocatalytic event: by keeping PANI/PSS in its oxidized form, the addition of beta-nicotinamide adenine dinucleotide (NADH) increases the DE with the increase of NADH concentration, which points to the possibility of the use of ESPD technologies for biosensing.     

Single nucleotide polymorphism detection by optical DNA-based sensing coupled with whole genomic amplification

The work presented here deals with the optimization of a strategy for detection of single nucleotide polymorphisms based on surface plasmon resonance imaging. First, a sandwich-like assay was designed, and oligonucleotide sequences were computationally selected in order to study optimized conditions for the detection of the rs1045642 single nucleotide polymorphism in the gene ABCB1. Then the strategy was optimized on a surface plasmon resonance imaging biosensor using synthetic DNA sequences in order to evaluate the best conditions for the detection of a single mismatching base. Finally, the assay was tested on DNA extracted from human blood which was subsequently amplified using a whole genome amplification kit. The direct detection of the polymorphism was successfully achieved. The biochip was highly regenerable and reusable for up to 20 measurements. Furthermore, coupling these promising results with the multiarray assay, we can foresee applying this biosensor in clinical research extended to concurrent analysis of different polymorphisms.     

Enhanced bioaffinity sensing using surface plasmons, surface enzyme reactions, nanoparticles and diffraction gratings

This paper introduces a novel approach to surface bioaffinity sensing based on the adsorption of nanoparticles onto a gold diffraction grating that supports the excitation of planar surface plasmons. A surface enzymatic amplification reaction is also incorporated into the detection scheme to enhance the sensitivity and utility of the nanoparticle-enhanced diffraction grating (NEDG) sensors. As a demonstration, the detection of microRNA is described where a combination of a surface polymerase reaction and DNA-modified nanoparticles is used to detect the bioaffinity adsorption of the target onto the probe-functionalized gold grating surface. The enzymatically-amplified NEDG sensors possess a great potential for a wide range of applications including the detection of biosecurity agents, DNA and RNA viruses, biomarkers, and proteins.     

Electrical sensing of volatile organic compounds in exhaled breath for disease diagnosis

In recent years, electrical sensors toward breath volatolomics have attracted increasing interest owing to their wide feasibility in noninvasive disease diagnostics. In this article, the working principles of active nanomaterials (e.g. metal oxides, polymers, and nanocarbon) toward volatile organic compounds are presented, with a special focus on the influence of surface chemistry and structural feature of these nanomaterials on the sensing performance. The latest and representative achievements on the direct analysis of three typical exhaled volatile organic compounds, including acetone, ammonia, and hydrogen sulfide, that are recognized as important disease biomarkers, are highlighted, indicating the capability of the electrical sensors in enabling noninvasive diagnosis and real-time monitoring. The opportunities and challenges in this field are provided in the end, with an emphasis on the background interference and data recognition which are key factors in developing prospective electrical sensors toward volatolomics analysis.     

Monitoring nitrite with optical sensing films

A new, low-cost nitrite sensor was developed by immobilizing a direct indicator dye in an optical sensing film for food and environmental monitoring. This sensor was fabricated by binding Safranine O to a cellulose acetate film that had previously been subjected to an exhaustive base hydrolysis. The membrane has good durability (>12 months) and a short response time (<8 s). Nitrite can be determined for the range of 0.005-2.00 μg ml⁻¹ with 3δ detection limits of 0.001 μg ml⁻¹. The method is easy to perform and uses acetylcellulose as a carrier. The reagents used for the activity of the cellulose support are inexpensive, non-toxic and widely available.     

Recent developments and applications of hybrid surface plasmon resonance interfaces in optical sensing

Nanostructured noble metals exhibit an intense optical near field due to surface plasmon resonance, therefore promising widespread applications and being of interest to a broad spectrum of scientists, ranging from physicists, chemists, and materials scientists to biologists. A wealth of research is available discussing the synthesis, characterization, and application of noble metal nanoparticles in optical sensing. However, with respect to the sensitivity of the frequency and width of these surface plasmon resonance modes to the particle’s shape, size, and environment, in nearly every case, success strongly depends on the availability of highly stable, adhesive, and sensitive nanoparticles. This undoubtedly presents a challenging task to nanofabrication. The past decade has witnessed fascinating advances in this field, in particular, the construction of oxide-based hybrid plasmonic interfaces to overcome the problem addressed above by (1) coating the metallic nanostructures with thin overlayers to form sandwiched structures or (2) embedding metallic nanostructures in a dielectric matrix to obtain metal/dielectric matrix nanocomposite films. In this critical review, we focus on recent work related to this field, beginning with a presentation of hybrid films with enhanced structural and optical stability, readily and selectively designed using chemical and physical techniques. We then illustrate their interesting optical properties and demonstrate exciting evidence for the postulated application in surface plasmon sensing fields. Finally, we survey the work remaining to be done for that potential to be realized.     

Membrane-introduced infrared spectroscopic chemical sensing method for the detection of volatile organic compounds in aqueous solutions

A novel membrane-introduced infrared (IR) chemical sensing method has been developed for the detection of volatile organic compounds (VOCs) in aqueous solutions. In this method, a porous Teflon membrane was used to eliminate the problems associated with conventional IR spectroscopic sensing methods. The porous Teflon membrane was sealed below an IR spectroscopic sensing element pre-coated with a hydrophobic film and a two-channel flow cell configuration was established. In this configuration, the aqueous sample was allowed to pass through the lower channel and the VOCs that penetrated through the membrane to the upper channel were detected by the IR sensor. In this manner, the performance of the sampling at the headspace was improved while the problems caused by the presence of water were eliminated. Meanwhile, using a purging channel allowed the sensing element to be regenerated rapidly and enabled automation of the detection process. The parameters that influenced the analytical signals were studied, such as the sampling flow rate, the pH and ionic strength of the sample solutions, the effect of the volatilities of the VOCs, and the regeneration efficiency of the sensing element. The results indicated that the analytical signals were insensitive to the sampling flow rate and to the pH and ionic strength of the sample solutions. The results obtained from the detection of seven different volatile compounds indicated that this method is highly suitable for the detection of organic compounds that have vapor pressures >1 Torr and that it is potentially usable for organic compounds that have vapor pressures between 20 mTorr and 1 Torr. The regression analysis of the standard curves indicated that a regression coefficient (R(2)) > 0.99 was obtainable in the concentration range from 1 to 100 microg mL(-1). The detection limits for the tested compounds were around a few hundred ng mL(-1).     

A surface plasmon resonance probe without optical fibers as a portable sensing device

A surface plasmon resonance (SPR) sensor integrating a small sensor probe, a laser emission diode, a photo detector, and a polarizer was developed as a portable sensing device. The sensor probe was made with a glass cylinder, 50 mm long and 1.5 mm in diameter, that was connected directly to a beam splitter without optical fibers. The SPR spectrum obtained with this probe system showed a 10% reflectivity minimum at 690 nm. Shifts of the SPR spectrum induced by refractive index (RI) changes in the sample were measured by detecting the reflection light intensity at 670 nm. When the sensitivity was compared using a BIAcore™ SPR instrument, the lowest sensor response of 1 mV observed with the SPR probe system coincided with 1.4 × 10⁻⁶ of the RI changes. The RI resolution of the SPR probe was estimated with experimentally evaluated noise on the signal, and, consequently, it was concluded that the RI resolution was 1.2 × 10⁻⁵. Moreover, immunoreaction was demonstrated with adsorbed bovine serum albumin (BSA) and anti-BSA antibody as an analyte. As a result, 50 ng mL⁻¹ of the lower detection limit was estimated.     

In-situ characterization of thin polymer films for applications in chemical sensing of volatile organic compounds by spectroscopic ellipsometry

Polymer coatings are applied in many kinds of chemical sensors. The interaction with organic vapours changes the physical properties of the coating material. For optical sensors, changes in the coating volume and the complex refractive index are most important. Spectroscopic ellipsometry has been applied for the first time to the in-situ characterization of thin poly(dimethylsiloxane) films in contact with tetrachloroethene, toluene and cyclohexane vapours. The differences in bulk refractive index between organic solvent and polymer are large for toluene and tetrachloroethene and both effects were studied separately. Cyclohexane has a bulk refractive index very close to the investigated poly(dimethylsiloxane) films. Therefore the calculation of the volume fraction of the analyte in the mixture phase with the polymer is subject to large errors for vapour concentrations below 5000 ppm. Received: 8 December 1995 / Revised: 5 March 1996 / Accepted: 6 March 1996     

In-situ characterization of thin polymer films for applications in chemical sensing of volatile organic compounds by spectroscopic ellipsometry

Polymer coatings are applied in many kinds of chemical sensors. The interaction with organic vapours changes the physical properties of the coating material. For optical sensors, changes in the coating volume and the complex refractive index are most important. Spectroscopic ellipsometry has been applied for the first time to the in-situ characterization of thin poly(dimethylsiloxane) films in contact with tetrachloroethene, toluene and cyclohexane vapours. The differences in bulk refractive index between organic solvent and polymer are large for toluene and tetrachloroethene and both effects were studied separately. Cyclohexane has a bulk refractive index very close to the investigated poly(dimethylsiloxane) films. Therefore the calculation of the volume fraction of the analyte in the mixture phase with the polymer is subject to large errors for vapour concentrations below 5000 ppm. Paper presented at the ANAKON ’95, Schliersee, München, Germany     

Interactions of volatile organic compounds with syndiotactic polystyrene crystalline nanocavities

The interaction of some volatile organic compounds, namely, 1,2-dichloroethane, 1,2-dibromoethane, and 1,1,2,2-tetrachloroethane, included in the δ crystalline phase of syndiotactic polystyrene (sPS) has been studied in terms of conformation, orientation, and dynamical behavior. By combination of X-ray diffraction (XRD), Fourier-transform infrared (FTIR), and solid-state (2)H NMR analyses, it has been shown that despite the differences in guest molecular properties (mass, boiling temperature, and volume), stable sPS/guest δ-clathrate cocrystals are formed since the nanoporous δ crystalline form has a flexible structure able to adapt itself to the guest molecule. As a consequence of inclusion, it has been shown that the guest diffusivity is strongly reduced and the dynamical processes are constrained, particularly when these guests are in trans conformation. This suggests the nanoporous sPS δ form to be an efficient tool for water and air purification through volatile organic compound absorption.     

An infrared evanescent wave sensing system coupled with a hollow fiber membrane for detection of volatile organic compounds in aqueous solutions.

We have developed an on-line sensing method for the detection of volatile organic compounds (VOCs) in contaminated aqueous solutions by combining a microporous hollow fiber membrane with an infrared (IR) sensing system. Polypropylene microporous hollow fibers were used to separate the VOCs from the aqueous solution into the hollow fibers, which were purged countercurrently for detection by the IR sensing systems. An evanescent-wave-type IR sensing system was used to detect the VOCs that were purged from the hollow fibers. The sensing element was coated with polyisobutylene (PIB) to concentrate the VOCs for their detection. To study the performance of this system, we examined a number of factors, such as the purging flow rate, the sample flow rate, and the volatilities of the VOCs. The results indicate that an increase in the purging flow rate reduces the analytical signal significantly, especially for purging flow rates >2 mL/min. The pumping flow rate for the aqueous sample also influenced the analytical signals, but far less sensitively. The volatilities of the examined compounds also affected the analytical signals: the higher the volatility of the compound, the lower the intensity of the analytical signals and the shorter the time required to reach the equilibrium signal. From an examination of the dynamic range of this proposed method, a regression coefficient >0.994 was obtained for concentrations below 250 mg/L, even under non-equilibrium conditions. The response time of the system was studied in an effort to examine the suitability of using this sensing method for automatic detection. The results indicate that new equilibrium conditions were established within 3 min for highly volatile compounds, which suggests that on-line monitoring of the levels of VOCs can be performed in the field.     

Enhanced optical sensing of anions with amide-functionalized gold nanoparticles

A gold nanoparticle surface-modified with amide ligands shows enhanced optical sensing of anions: the detection limit is increased by about three orders of magnitude higher than that originally expected from the anion binding ability of neutral amide ligands.     

Signal amplification by conjugate addition for differential sensing with synthetic pores

The Michael addition of hydrazide signal amplifiers to short-lived orthoquinone analytes is introduced as a new method to contribute toward the discrimination of polyphenols (e.g. epigallocatechin gallate, resveratrol) with synthetic pores.     

Sampling and determination of volatile organic compounds with needle trap devices

In this study, a sorbent was immobilized inside a needle resulting in the development of a needle trap (NT) device. This device was applied to extract organic components from gaseous samples and to introduce an enriched mixture into a conventional gas chromatography (GC) injector. Construction of this simple and integrated sampling/extraction/sample introduction device was optimized by considering different ways to immobilize a sorbent in the needle, packing single and multiple-layer sorbent beds, and applying different desorption strategies into the GC injector. A carrier gas system was modified to minimize the carryover for the needle trap with a sealed tip (NT-1), and a narrow-neckliner was used for the blunt-tip needle trap (NT-2). Breakthrough in the device was investigated by connecting two NT-2 devices in series. The needle trap performed very well as an exhaustive spot sampler, as well as in a time-weighted average (TWA) operation. The linear velocity of the mobile phase has no influence on the sampling rate of the needle trap. Validation results against the standard NIOSH 1501 method using charcoal tubes for indoor air surveys demonstrated good accuracy for the NT approach. The reproducibility of the NT-2 was about 1% for benzene. The detection limits for FID detection and for 25 ml gas sample were 0.23 ng/l, 2.10 ng/l and 1.12 ng/l for benzene, ethylbenzene and o-xylene, respectively.     

The application of the phase transition in nematic liquid crystals for the optical detection of volatile organic compounds

It is demonstrated that optical transducers can take advantage from the outstanding optical properties of nematic liquid crystals. The measurements point out that the birefringence and the phase transition of a liquid crystal can be exploited for the threshold sensing. For that purpose a device consisting of an orientated liquid crystalline film between two crossed polarizers was used. The nematic liquid crystal was also used as a sensitive coating material on an integrated optical Mach-Zehnder interferometer. The calibration experiments were carried out with volatile organic solvents and different calibration curves were measured for meta-xylene and para-xylene.