Are the radical centers in peptide radical cations mobile? The generation, tautomerism, and dissociation of isomeric alpha-carbon-centered triglycine radical cations in the gas phase

The mobility of the radical center in three isomeric triglycine radical cations[G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) has been investigated theoretically via density functional theory (DFT) and experimentally via tandem mass spectrometry. These radical cations were generated by collision-induced dissociations (CIDs) of Cu(II)-containing ternary complexes that contain the tripeptides YGG, GYG, and GGY, respectively (G and Y are the glycine and tyrosine residues, respectively). Dissociative electron transfer within the complexes led to observation of [Y(*)GG](+), [GY(*)G](+), and [GGY(*)](+); CID resulted in cleavage of the tyrosine side chain as p-quinomethide, yielding [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+), respectively. Interconversions between these isomeric triglycine radical cations have relatively high barriers (> or = 44.7 kcal/mol), in support of the thesis that isomerically pure [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) can be experimentally produced. This is to be contrasted with barriers < 17 kcal/mol that were encountered in the tautomerism of protonated triglycine [Rodriquez C. F. et al. J. Am. Chem. Soc. 2001, 123, 3006-3012]. The CID spectra of [G(*)GG](+), [GG(*)G](+), and [GGG(*)](+) were substantially different, providing experimental proof that initially these ions have distinct structures. DFT calculations showed that direct dissociations are competitive with interconversions followed by dissociation.     

A photoionization study of the ion-neutral complexes CH3CH +CH 3 · CH2CH3] and CH3CH2CH+CH 3 · CH3 in the gas phase: Formation,H-transfer and C—C bond formation between partners,and channeling of energy into dissociation

Photoionization mass spectrometry was used to investigate the dynamics of ion-neutral complex-mediated dissociations of the n-pentane ion (1). Reinterpretation of previous data demonstrates that a fraction of ions 1 isomerizes to the 2-methylbutane ion (2) through the complex CH₃CH⁺CH ₃ ^· CH₂CH₃ (3), but not through CH₃CH⁺CH₂CH ₃ ^· CH₃ (4). The appearance energy for C₃Hin ₇ ⁺ formation from 1 is 66 kJ mol^?1 below that expected for the formation of n-C₃H ₇ ⁺ and just above that expected for formation of i-C₃H ₇ ⁺ . This demonstrates that the H shift that isomerizes C₃H ₇ ⁺ is synchronized with bond cleavage at the threshold for dissociation to that product. It is suggested that ions that contain n-alkyl chains generally dissociate directly to more stable rearranged carbenium ions. Ethane elimination from 3 is estimated to be about seven times more frequent than is C-C bond formation between the partners in that complex to form 2, which demonstrates a substantial preference in 3 for H abstraction over C-C bond formation. In 1 → CH₃CH⁺CH₂CH₃ + CH₃ by direct cleavage of the C1–C2 bond, the fragments part rapidly enough to prevent any reaction between them. However, 1 → 2 → 4 → C4H ₈ ⁺ + CH₄ occurs in this same energy range. Thus some of the potential energy made available by the isomerization of n-C₄H₉ in 1 is specifically channeled into the coordinate for dissociation. In contrast, analogous formation of 3 by 1 → 3 is predominantly followed by reaction between the electrostatically bound partners.     

Vapor phase composition and radical polymerization—how the gas phase influences the kinetics of heterophase polymerization

The outcome of radical styrene heterophase polymerization depends strongly on the composition of the gas phase. Data of a comprehensive experimental study show that the effect of the gas phase is quite a complex one and strongly influenced by the nature of the gas, the homogeneity or heterogeneity of the polymerization system, and the kind of initiator. Evidence is presented that the influence of air goes beyond the simple action of oxygen which can cause deceleration or acceleration of the reaction. The experimental results show that the optimum polymerization conditions are obtained in the absence of any foreign gas.     

Measurement of the rate constants for the reactions of the IO• radical with sulfur-containing compounds H2S, (CH3)2S, and SO2

The reactions of iodine monoxide (IO^•) with sulfur-containing compounds, which are important for the atmospheric chemistry, are studied. An attempt is made to distinguish between the heterogeneous and homogeneous reaction pathways. It is shown that, under the experimental conditions, the reactions proceed on the wall and generate iodine atoms into the gas phase. It is found that, at room temperature, the rate constants for the gas-phase reactions of IO^• with (CH₃)₂S and H₂S are lower than 2.5 × 10⁻¹⁴ and 8.0 × 10⁻¹⁴ cm³ molecule⁻¹ s⁻¹, respectively; the rate constant for the gas-phase reaction of iodine monoxide with SO₂ ≤ 5.6 × 10⁻¹⁵ cm³ molecule⁻¹ s⁻¹.     

A comparative QCISD(T), DFT and MCSCF study of the unimolecular, decomposition of the N-chloro-α-glycine anion in gas phase

Stationary points were localized and characterized on potential energy surfaces for the unimolecular decomposition of the anionic form of N-chloro--glycine in its singlet and triplet electronic states by means of QCISD(T), DFT and MCSCF methods. The present study predicts that the unimolecular decomposition mechanism takes place in the singlet electronic state through a concerted and slightly asynchronous process and the transition structure has an antiperiplanar conformation. A comparison of the structures for stationary points calculated with different methods yields similar geometries and the components of transition vector are weakly dependent on the computing method.     

Brønsted basicities of diamines in the gas phase, acetonitrile, and tetrahydrofuran

A comprehensive basicity study of alpha,omega-alkanediamines and related bases has been carried out. Basicities in acetonitrile (AN, pK(a) values), tetrahydrofuran (THF, pK(alpha) values), and gas phase (GP, GB values), were measured for 16, 14, and 9 diamine bases and for several related monoamines. In addition the gas-phase basicities and equilibrium geometries were computed for 19 diamino bases and several related monoamines at the DFT B3LYP 6-311+G** level. The effects of the different factors (intrinsic basicity of the amino groups, formation of intramolecular hydrogen bonds, and molecular strain) determining the diamine basicities were estimated by using the method of isodesmic reactions. The results are discussed in terms of molecular structure and solvation effects. The GP basicity is determined by the molecular size and polarizability, the extent of alkylation, and the energy effect of intramolecular hydrogen bond formation in the protonated base. The basicity trends in the solvents differ very much from those in GP: 1) The solvents severely compress the basicity range of the bases studied (3.5 times for the 1,3-propanediamine family in AN, and 7 times in THF), and 2) while stepwise alkylation of the basicity center leads to a steady basicity increase in the gas phase, the picture is complex in the solvents. Significant differences are also evident between THF and AN. The high hydrogen bond acceptor strength of THF leads to this solvent favoring the bases with "naked" protonation centers. In particular, the basicity order of N-methylated 1,3-propanediamines is practically inverse to that in the gas phase. The picture in AN is intermediate between that of GP and THF.     

Formation and internal energy distribution of the CH(A2Δ) radical by electron-impact dissociation of methyl halides

The dissociative excitation of CH₃X (X = Cl, Br, I) producing CH(A²Δ) is investigated by low-energy electron impact. The onsets of the CH(AX) emission from CH₃Cl, CH₃Br and CH₃I are 11.8 ± 0.3, 11.4 ± 0.3 and 11.2 ± 0.3 eV, respectively. It can be concluded that CH₃X → CH(A) + H₂(X) + X (X = Cl, Br, I) is the predominant process for formation of CH(A) near its onset. The internal energy distributions of CH(A) evaluated by means of a simulation analysis of the CH(AX) band are nearly independent of the impact energy for impinging electrons above 19 eV.     

Experimental validation of the α-effect in the gas phase

The α-effect-enhanced nucleophilicity of an anion with a lone pair of electrons adjacent to the attacking atom-has been well documented in solution; however, there is continuing disagreement about whether this effect is a purely solvent-induced phenomenon or an intrinsic property of the α-nucleophiles. To resolve these discrepancies, we explore the α-effect in the bimolecular nucleophilic substitution reaction in the gas phase. Our results show enhanced nucleophilicity for HOO(-) relative to "normal" alkoxides in three separate reaction series (methyl fluoride, anisole, and 4-fluoroanisole), validating an intrinsic origin of the α-effect. Caution must be employed when making comparisons of the α-effect between the condensed and gas phases due to significant shifts in anion basicity between these media. Variations in electron affinities and homolytic bond strengths between the normal and α-anions indicate that HOO(-) has distinctive thermochemical properties.     

UV photolysis of α-cyclohexanedione in the gas phase

Ultraviolet absorption spectrum of α-cyclohexanedione (α-CHD) vapor in the wavelength range of 220-320 nm has been recorded in a 1 m long path gas cell at room temperature. With the aid of theoretical calculation, the band has been assigned to the S(2) ← S(0) transition of largely ππ* type. The absorption cross section at the band maximum (～258 nm) is nearly 3 orders of magnitude larger compared to that for the S(2) ← S(0) transition of a linear α-diketo prototype, 2,3-pentanedione. The photolysis was performed by exciting the sample vapor near this band maximum, using the 253.7 nm line of a mercury vapor lamp, and the products were analyzed by mass spectrometry as well as by infrared spectroscopy. The identified products are cyclopentanone, carbon monoxide, ketene, ethylene, and 4-pentenal. Geometry optimization at the CIS/6-311++G** level predicts that the carbonyl group is pyramidally distorted in the excited S(1) and S(2) states, but the α-CHD ring does not show dissociative character. Potential energy curves with respect to a ring rupture coordinate (C-C bond between two carbonyl groups) for S(0), S(1), S(2), T(1), T(2), and T(3) states have been generated by partially optimizing the ground state geometry at DFT/B3LYP/6-311++G** level and calculating the vertical transition energies to the excited states by TDDFT method. Our analysis reveals that the reactions can take place at higher vibrational levels of S(0) as well as T(1) states.     

Cation-π effects in the complexation of Na+ and K+ with Phe, Tyr, and Trp in the gas phase

Na⁺ and K⁺ gas-phase affinities of the three aromatic amino acids Phe, Tyr, and Trp were measured by the kinetic method. Na⁺ binds these amino acids much more strongly than K⁺, and for both metal ions the binding strength was found to follow the order Phe ≤ Tyr < Trp. Quantum chemical calculations by density functional theory (DFT) gave the same qualitative ordering, but suggested a somewhat larger Phe/Trp increment. These results are in acceptable agreement with predictions based on the binding of Na⁺ and K⁺ to the side chain model molecules benzene, phenol, and indole, and are also in reasonable agreement with the predictions from purely electrostatic calculations of the side-chain binding effects. The binding energies were compared with those to the aliphatic amino acids glycine and alanine. Binding to the aromatic amino acids was found to be stronger both experimentally and computationally, but the DFT calculations indicate substantially larger increments relative to alanine than shown by the experiments. Possible reasons for this difference are discussed. The metal ion binding energies show the same trends as the proton affinities.     

Oxidation of phenol in aqueous acid: characterization and reactions of radical cations vis-à-vis the phenoxyl radical

Aqueous sulfuric acid containing up to approximately 14 M acid (H0 > or = -7.0) was used as solvent in pulse radiolytic redox studies to characterize cationic transients of phenol (C6H5OH) and map their reactions. The primary radical yields were first measured to correlate the variation in various radical concentrations as a function of increasing acid fraction in the solvent. Compared to their respective values at pH 2, the G(Ox*) increased with almost a linear slope of approximately 0.024 micromol J(-1) for H0(-1) (or pH(-1)) up to H0 -6.0 (Ox* = *OH + SO4*-), whereas G(H*) increased with a slope of approximately 0.033 micromol J(-1) for H0(-1) (or pH(-1)) up to H0 -5.0. In the presence of > 10 M acid (H0 < -5.0), phenol was oxidized to its radical cation, C6H5OH*+, which further reacted with phenol and generated the secondary, dimeric radical cation, (C6H5OH)2*+, following an equilibrium reaction C6H5OH*+ + C6H5OH <==> (C6H5OH)2*+, with K(eq) = 315 +/- 15 M(-1). The two cationic radicals were characterized from their individual UV-vis absorption spectra and acidity. The C6H5OH*+ absorption peaks are centered at 276 and 419 nm, and it was found to be more acidic (pKa = -2.75 +/- 0.05) than (C6H5OH)2*+ (pKa = -1.98 +/- 0.02), having its major peak at 410 nm. On the other hand, in the presence of < 6.5 M acid the C6H5O* reactions followed the radical dimerization route, independent of the parent phenol concentration.     

μSr studies of free radicals in the gas phase

Muonium (Mu=₊+e^-) is the bound state of a positive muon and an electron. Since the positive muon has a mass about 1/9 of the proton, Mu can be regarded as an ultra light isotope of hydrogen with unusually large mass ratios (MuHDT=1/9123). The muon spin rotation technique (SR) relies on the facts that (1) the muon produced in pion decay, ^{+ +} + , is 100% spin polarized and (2) the positron from muon decay is emitted preferentially along the instantaneous muon spin direction at the time of the muon decay.In transverse field SR (TF-SR), the precession of the muon spin in muonium substituted radicals is directly observed by detecting decay positrons time differentially. From observed radical frequencies, the hyperfine coupling constants (A ) of C₂H₄Mu, C₂D₄Mu,¹³C₂H₄Mu, C₂F₄Mu, and C₂H₃FMu are determined. In the longitudinal field avoided level crossing (LF-ALC) technique, one observes the resonant loss of the muon spin polarization caused by the crossing of hyperfine levels at particular magnetic fields. The LF-ALC method together with the information onA obtained from TF-SR allows one to determine the magnitude and sign of the nuclear hyperfine constants at - and -positions. Results are compared with hydrogen substituted ethyl-radicals and isotope effects are discussed.     

Thermochemistry of ammonium nitrate, NH₄NO₃, in the gas phase

Hildenbrand and co-workers have shown recently that the vapor above solid ammonium nitrate includes molecules of NH?NO?, not only NH? and HNO? as previously believed. Their measurements led to thermochemical values that imply an enthalpy change of D??? = 98 ± 9 kJ mol?1 for the gas-phase dissociation of ammonium nitrate into NH? and HNO?. Using updated spectroscopic information for the partition function leads to the revised value of D??? = 78 ± 21 kJ mol?1 (accompanying paper in this journal, Hildenbrand, D. L., Lau, K. H., and Chandra, D. J. Phys. Chem. B 2010, DOI: 10.1021/jp105773q). In contrast, high-level ab initio calculations, detailed in the present report, predict a dissociation enthalpy half as large as the original result, 50 ± 3 kJ mol?1. These are frozen-core CCSD(T) calculations extrapolated to the limiting basis set aug-cc-pV∞Z using an anharmonic vibrational partition function and a variational treatment of the NH? rotor. The corresponding enthalpy of formation is Δ(f)H???°(NH?NO?,g) = ?230.6 ± 3 kJ mol?1. The origin of the disagreement with experiment remains unexplained.     

Can radical cations of the constituents of nucleic acids be formed in the gas phase using ternary transition metal complexes?

Electrospray ionization (ESI) tandem mass spectrometry (MS/MS) of ternary transition metal complexes of [M(L(3))(N)](2+) (where M = copper(II) or platinum(II); L(3) = diethylenetriamine (dien) or 2,2':6',2'-terpyridine (tpy); N = the nucleobases: adenine, guanine, thymine and cytosine; the nucleosides: 2'deoxyadenosine, 2'deoxyguanosine, 2'deoxythymine, 2'deoxycytidine; the nucleotides: 2'deoxyadenosine 5'-monophosphate, 2'deoxyguanosine 5'-monophosphate, 2'deoxythymine 5'-monophosphate, 2'deoxycytidine 5'-monophosphate) was examined as a means of forming radical cations of the constituents of nucleic acids in the gas phase. In general, sufficient quantities of the ternary complexes [M(L(3))(N)](2+) could be formed for MS/MS studies by subjecting methanolic solutions of mixtures of a metal salt [M(L(3))X(2)] (where M = Cu(II) or Pt(II); L(3) = dien or tpy; X = Cl or NO(3)) and N to ESI. The only exceptions were thymine and its derivatives, which failed to form sufficient abundances of [M(L(3))(N)](2+) ions when: (a) M = Pt(II) and L(3) = dien or tpy; (b) M = Cu(II) and L(3) = dien. In some instances higher oligomeric complexes were formed; e.g., [Pt(tpy)(dG)(n)](2+) (n = 1-13). Each of the ternary complexes [M(L(3))(N)](2+) was mass-selected and then subjected to collision-induced dissociation (CID) in a quadrupole ion trap. The types of fragmentation reactions observed for these complexes depend on the nature of all three components (metal, auxiliary ligand and nucleic acid constituent) and can be classified into: (i) a redox reaction which results in the formation of the radical cation of the nucleic acid constituent, N(+.); (ii) loss of the nucleic acid constituent in its protonated form; and (iii) fragmentation of the nucleic acid constituent. Only the copper complexes yielded radical cations of the nucleic acid constituent, with [Cu(tpy)(N)](2+) being the preferred complex due to suppression, in this case, of the loss of the nucleobase in its protonated form. The yields of the radical cations of the nucleobases from the copper complexes follow the order of their ionization potentials (IPs): G (lowest IP) > A > C > T (highest IP). Sufficient yields of the radical cations of each of the nucleobases allowed their CID reactions (in MS(3) experiments) to be compared to their even-electron counterparts.     

Calculated vertical ionization energies of the common α-amino acids in the gas phase and in solution

The vertical ionization energies of the low-lying conformers of the α-amino acids found in proteins have been calculated. Geometry optimizations were first performed at the B3LYP/6-311G(d,p) level of theory, and then reoptimized at the MP2/6-311G(d,p) level of theory. Vertical ionization energies were then computed by three methods, electron propagator in the partial third-order (P3) approximation, Outer-Valence-Green's Functions, and by evaluating the difference in the total energy between the cation radical and the neutral amino acid in the geometry of the neutral species. When available, the results are compared to the experimental vertical ionization energies. The vertical ionization energies calculated using the MP2/P3 method gave the best overall agreement with the experimental results. Next, the ionization energies in solution are calculated for the zwitterionic forms of the α-amino acids by using IEFPCM methods. To obtain the vertical ionization energy in solution, it is necessary to use the nonequilibrium polarizable continuum model (NEPCM), the results of which are reported here for the α-amino acids.     

C2H2N2 Isomers in the gas phase: Characterization of CH2N-CN and HNCH-CN by collisional activation mass spectrometry

The C₂H₂N₂ isomers CH₂N-CN and HNCH-CN have been selectively generated, the former by flash vacuum pyrolysis of trimethylenetetrazole and 5H,10H-dihydroditetrazolo [1,5-a:1',5'-d] pyrazine; the latter from azidoacetonitrile and from the lithium and sodium salts of the tosylhydrazone of 1-cyanoformamide. CH₂N-CN and HNCH-CN are unequivocally distinguished by their collisional activation mass spectra. The pyrolysis of dimethylcyanamide gives predominantly CH₂N-CN and CH₃-NH-CN.     

Ab initio studies on the pyrolysis mechanism of 2-haloacetic acids in the gas phase

The dehydrohalogenation mechanism of 2-haloacetic acids (XCH2CO2H, X=F, Cl and Br) has been studied theoretically by HF/3-21G and AM1 methods. The results indicate that these reactions are most probably proceeded in terms of a polar five-membered cyclic transition state in the gas phase. Their microscopic processes are beleived to be a stepwise reaction and the rate-determining step is the first one. By comparing the energy barriers of different 2-haloacetic acids, it can be realized that 2-fluoroacetic acid is easier to react than 2-chloroacetic and 2-bromoacetic acids.     

Ab initio study of tautomerism and hydrogen bonding of β-carbonylamine in the gas phase and in water solution

All the possible conformations of the three tautomeric isomers of simple β-carbonylamine were fully optimized at ab initio MP2/6-31G** and B3LYP/6-31G** levels in order to determine the conformational equilibrium and the energies of the O—H···N and O···H—N hydrogen bridges. For the most interesting conformations, further calculations in water solution were also carried out. It was found that carbonylamine is the most stable tautomer, followed by enolimine and carbonylimine. This order of stability does not change in solution. O—H···N is the strongest hydrogen bridge, but in solution its energy as well as that of the O···H—N one are dramatically lowered. The deprotonation energy was also calculated and discussed. Received: 16 September 1999 / Accepted: 3 February 2000 / Published online: 5 June 2000     

Reaction kinetics and thermochemistry of the chemically activated and stabilized primary ethyl radical of methyl ethyl sulfide,CH3SCH2CH2•, with O2 to CH3SCH2CH2OO•

Oxidation of methyl ethyl sulfide (CH₃SCH₂CH₃, methylthioethane, MES) under atmospheric and combustion conditions is initiated by hydroxyl radicals, MES radicals, generated after loss of a H atom via OH abstraction, will further react with O₂ to form chemically activated and stabilized peroxyl radical adducts. The kinetics of the chemically activated reaction between the CH₃SCH₂CH₂• radical and molecular oxygen are analyzed using quantum Rice-Ramsperger-Kassel theory for k(E) with master equation analysis and a modified strong-collision approach to account for further reactions and collisional deactivation. Thermodynamic properties of reactants, products, and transition states are determined by the B3LYP/6-31+G(2d,p), M062X/6-311+G(2d,p), ωB97XD/6-311+G(2d,p) density functional theory, and CBS-QB3, G3MP2B3, and G4 composite methods. The reaction of CH₃SCH₂CH₂• with O₂ forms an energized peroxy adduct CH₃SCH₂CH₂OO• with a calculated well depth of 34.1 kcal mol⁻¹ at the CBS-QB3 level of theory. Thermochemical properties of reactants, transition states, and products obtained under CBS-QB3 level are used for calculation of kinetic parameters. Reaction enthalpies are compared between the methods. The temperature and pressure-dependent rate coefficients for both the chemically activated reactions of the energized adduct and the thermally activated reactions of the stabilized adducts are presented. Stabilization and isomerization of the CH₃SCH₂CH₂OO• adduct are important under high pressure and low temperature. At higher temperatures and atmospheric pressure, the chemically activated peroxy adduct reacts to new products before stabilization. Addition of the peroxyl oxygen radical to the sulfur atom followed by sulfur-oxygen double bond formation and elimination of the methyl radical to form S(= O)CCO• + CH₃ (branching) is a potentially important new pathway for other alkyl-sulfide peroxy radical systems under thermal or combustion conditions.