Raman and infrared spectra,conformational stability,barriers to internal rotation,r 0 structural parameters,ab initio calculations,and vibrational assignment for vinyl chloroformate

The Raman (3200 to 10 cm^–1) and infrared (3500 to 50 cm^–1) spectra of vinyl chloroformate, H₂C=CHOC(O)Cl, have been recorded for both the gas and solid. Additionally, the Raman spectrum of the liquid has been recorded, and depolarization ratios have been obtained. These data have been interpreted on the basis that the only stable conformation present at ambient temperature is thetrans-trans rotamer, where the firsttrans refers to the vinyl moiety relative to the O—CCl bond and the second to the C—Cl bond relative to the=C—O bond. Using harmonic rigid asymmetric top calculations, the infrared vapor phase contours for the C=O and the C=C stretch were predicted for thetrans-trans and for thecis-trans conformer, and were compared with experiment. For both fundamentals thetrans-trans hybrid reproduces the experimental contour, whereas thecis-trans contours fail to do so for both fundamentals. From far-infrared spectrum of the vapor obtained at 0.1 cm^–1 resolution, the C(O)Cl andO-vinyl torsional fundamentals have been observed at 132 and 61 cm^–1, respectively. Ther ₀ structural parameters have been obtained from a combination of ab initio calculated parameters with appropriate offset values and the fit of the microwave rotational constants for the two naturally occurring chlorine isotopes. The structure, barrier to internal rotation, and vibrational frequencies have been determined from ab initio Hartree-Fock gradient calculations, using the 3-21G^* and 6-31G^* basis sets. These results are compared to those obtained experimentally and to similar quantities for some related molecules.     

Optical absorption,infrared, Raman,and EPR spectral studies on natural iowaite mineral

Natural iowaite, magnesium–ferric oxychloride mineral having light green color originating from Australia has been characterized by EPR, optical, IR, and Raman spectroscopy. The optical spectrum exhibits a number of electronic bands due to both Fe(III) and Mn(II) ions in iowaite. From EPR studies, the g values are calculated for Fe(III) and g and A values for Mn(II). EPR and optical absorption studies confirm that Fe(III) and Mn(II) are in distorted octahedral geometry. The bands that appear both in NIR and Raman spectra are due to the overtones and combinations of water and carbonate molecules. Thus EPR, optical, and Raman spectroscopy have proven most useful for the study of the chemistry of natural iowaite and chemical changes in the mineral.     

Half-metallicity,magnetism, mechanical,thermal, and phonon properties of FeCrTe and FeCrSe half-Heusler alloys under pressure

The half-metallicity of Heusler alloys is quite sensitive to high pressure and disorder. To understand this phenomenon better, we systematically studied the half-metallic nature, magnetism, phonon, and thermomechanical properties of FeCrTe and FeCrSe Heusler alloys under high pressure using ab initio calculations based on density functional theory. The ground-state lattice constants for FeCrTe and FeCrSe alloys are 5.93 and 5.57 Å, respectively, consistent with available theoretical results. Formation energy, cohesive energy, elastic constants, and phonon dispersion confirmed that both compounds are thermodynamically and mechanically stable. The FeCrTe and FeCrSe alloys showed a half-metallic character with a band gap of 0.68 and 0.58 eV at 0 GPa pressure, respectively, and magnetic moments of 2.01 μ_B for both alloys, using generalized gradient approximation (GGA) approximation. FeCrTe alloy changes from metallic to half-metallic above 30 GPa pressure using GGA + U. The elastic properties were scrutinized, and it was found that, at 0 GPa pressure, FeCrTe is ductile, and FeCrSe is brittle. Under pressure, FeCrSe becomes brittle above 10 GPa pressure. Average sound velocity V_m, Debye temperature Ɵ_D, and heat capacity C_V were predicted under pressure. These outcomes will improve the integration of Fe-based half-Heusler alloys in spintronic devices.     

Kinetics of the formation,decomposition, and disproportionation reactions of N-chlorobutylamines

The formation of N-chlorobutylamines is a reaction of order one with respect to hypochlorite and amine, and order ?1 with respect to OH^?. Kinetic studies show that N-chlorobutylamines undergo decomposition in basic aqueous media, and disproportination (with formation of N,N-dichloramines) in acidic media, mechanisms are put forward for both these processes. © 1995 John Wiley & Sons, Inc.     

Synthesis, Characterization, and Antibacterial Activity of Complexes of (1S,2S)-N,N-1,2-Diphenylethylene-bis-(5-imino-1-phenyl-1,3-hexanedione)

Summary.  The synthesis and characterization of homobimetallic complexes of VO(IV), Cr(II), Co(II), Ni(II), and Cu(II) with the chiral Schiff base (1S,2S)-N,N-1,2-Diphenylethylene-bis-(5-imino-1-phenyl-1,3-hexa-nedione) is reported. The metal ions occupy both compartments of the ligand; water molecules fill the coordination spheres to provide an octahedral environment around the central atoms. The antibacterial activity of both mono- and bimetallic complexes against a number of Gram-positive as well as Gram-negative bacteria has been tested and is discussed. Received March 28, 2000. Accepted May 26, 2000     

Infrared and Raman Spectra,Conformational Stability,Ab Initio Calculations,and Vibrational Assignments for Cyclopropyldifluorosilane

The infrared (3200–30 cm^–1) spectra of gaseous and solid Cyclopropyldifluorosilane, c-C₃H₅SiF₂H, and the Raman spectra (3200–20 cm^–1) of the liquid with quantitative depolarization values and the solid have been recorded. Both the syn (cis) and skew (gauche) conformers have been identified in the fluid phases, but only the syn conformer remains in the solid. Variable temperature (–55 to –100°C) studies of the infrared spectra of the sample dissolved in liquid xenon have been carried out. From these data, the enthalpy difference has been determined to be 73 ± 10 cm^–1 (209 ± 29 cal mol^–1), with the syn conformer being the more stable rotamer, which is at variance with the predictions from ab initio calculations. A complete vibrational assignment is proposed for both conformers based on infared band contours, relative intensities, depolarization values, and group frequencies. The vibrational assignments are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G* calculations. Utilizing the frequencies of the silicon–hydrogen sketch, the rm Si—H bond distances of 1.474 and 1.472 Å have been obtained for the syn and skew conformers, respectively. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G* and 6-311 +G** basis sets at levels of restricted Hartree-Fock (RHF) and/or Moller–Plesset (MP) to second order. The potential energy terms for the conformer interconversion have been obtained from the MP2/6-31G* calculation. The results are discussed and compared to those obtained for some similar molecules.     

Phytochemical analysis,antimicrobial, antioxidant and urease inhibitory potential of Cyphostemma digitatum Lam.

In this paper we report the antimicrobial, antiradical and urease inhibitory potential along with photochemical investigation of the crude extracts of Cyphostemma digitatum Lam. Phytochemical screening of both the crude (hot/cold) alcoholic and aqueous extracts of C. digitatum showed the presence of alkaloids, flavonoids, saponins, coumarins, steroids, terpenoids and tannins. The crude methanolic extract (hot/cold) exhibited good antioxidant activity, while the aqueous extract was a weak antioxidant. The crude methanolic extract was found to be more active against Bacillus subtilis, while both the extracts showed moderate antifungal potential, the methanolic crude extract showed good urease inhibitory activity compared with the aqueous crude extract.     

Solution Conformations,Photophysics, and Photochemistry of Bile Pigments; Bilirubin and Biliverdin,Dimethyl Esters and Related Linear Tetrapyrroles

Bilirubin and biliverdin dimethyl esters (BRE and BVE, respectively) and related linear tetrapyrroles have been studied using a combination of photochemical and spectroscopic techniques, the latter including absorption, fluorescence fluorescence excitation, medium-induced circular dichroism, and proton magnetic resonance. Both types of tetrapyrroles form mixtures of different topological isomers in very dilute solutions. In the case of the bilirubins the heterogeneity of the solutions is caused by two coexisting conformers with different orientations of the A/B and C/D pyrromethenone moieties with repect to each other. The spectral properties of one conformer resemble the isolated parent pyrromethenone, whereas those of the other result from electronic coupling of the two subchromophores presumably held in a “ridge tile” -like orientation. C? C rotations at the C-5 and C-15 bridges substantially compete in both components with the photochemical channels (E→Z isomerization and lumirubin formation) for the radiationless deactivation of the excited singlet state. The more rigid “ridge tile” component additionally undergoes hydrogen bond-mediated deactivation, and it photoisomerizes more efficiently. The situation is markedly more complex with the biliverdins. In order to obtain a more detailed insight into the mechanisms of the radiationless excited-state processes, time-resolved optoacoustic spectroscopy and ultrafast absorption (pump-probe) and fluorescence detection (single-photon-timing) techniques were used to supplement the stationary methods. The solution mixtures are composed of a (family of) helically coiled all-Z, all-syn species, and of species differing from the former by stretched arrangements of the rings B and C around the central C-10 bridge (E-anti, E-syn, and Z-anti). Two excited singlet states with picosecond lifetimes are attributed to either one or two coiled ground-state forms, and two remarkably long-lived nanosecond excited states arise each from a stretched ground state. The radiationless deactivation of the shorter-lived of the picosecond states is brought about by ultrafast intramolecular proton transfer between the B/C nitrogen atoms, in addition to the C? C rotational modes operative in both. Z→E photoisomerization is also an appreciable deactivation channel of excited biliverdin dimethyl ester. It is confined to the central C-10 double bond and selectively affords a stretched isomer (10E-anti), which thermally reforms the coiled starting meterial at room temperature via a sequence of tautomerization and C? C rotation. Heating or ultrasonic treatment can reverse this sequence and drive it farther to populate another stretched isomer (10E-syn) which is thermally stable at room temperature. This stretched form aggregates (presumably to dimers) already at concentrations at which the coiled species still appears to be fully monomeric.     

Theoretical Study of Molecular Structure,Reactivity, Lipophilicity,and Solubility of N-Hydroxyurea,N-Hydroxythiourea,and N-Hydroxysilaurea

Ab initio molecular orbital methods at the CBS-QB3 level of theory have been used to study the structure and gas-phase stability of various tautomers and rotamers of N-hydroxyurea, N-hydroxythiourea, and N-hydroxysilaurea, their anions and protonated forms. The geometries of N-hydroxyurea, N-hydroxythiourea, and N-hydroxysilaurea, their anions and cations were optimized at the Becke3LYP/CBSB7 level of theory. For all compounds studied, the amidic form is computed to be substantially more stable than the iminolic tautomer. N-Hydroxyurea and its thio and sila derivatives are computed to behave as Nacids in the gas phase. These compounds are in gas-phase weak acids with a calculated acidity of about 1425 to 1355 kJ-mol^–1. Basicities increase in the order: N-hydroxyurea < N-hydroxythiourea < N-hydroxysilaurea. The most stable protonated structures are represented by several isomers with almost equal stability. Thus, in the N-hydroxyurea, N-hydroxythiourea, and N-hydroxysilaurea, both protonation at the double bonded (C=O, C=S and Si=O) oxygen and sulfur atoms, as well as the protonation at the N(H)OH nitrogen basic center is equally probable. The experimental pK _a value (10.6) of N-hydroxyurea and the computed value (9.7) for its monohydrated complex with the specifically hydrogen-bonded water molecule to the ionizable OH group are in a good agreement. The experimental partition coefficient of N-hydroxyurea is best reproduced by the Alog P_s method. The formation of nitroxide radical in the reaction of N-hydroxyurea and its sulfur and silicon substituted derivatives with the phenol radical is an exothermic process. Thus, the \bondN(H)OH moiety of these compounds may quench the structurally related tyrosyl radicals in the active site of ribonucleotide reductase.     

Synthesis, Characterization, and Antibacterial Activity of Complexes of (1S,2S)-N,N-1,2-Diphenylethylene- bis -(5-imino-1-phenyl-1,3-hexanedione)

 The synthesis and characterization of homobimetallic complexes of VO(IV), Cr(II), Co(II), Ni(II), and Cu(II) with the chiral Schiff base (1S,2S)-N,N-1,2-Diphenylethylene-bis-(5-imino-1-phenyl-1,3-hexa-nedione) is reported. The metal ions occupy both compartments of the ligand; water molecules fill the coordination spheres to provide an octahedral environment around the central atoms. The antibacterial activity of both mono- and bimetallic complexes against a number of Gram-positive as well as Gram-negative bacteria has been tested and is discussed.     

Room-Temperature,Metal-Free,and One-Pot Preparation of 2H-Indazoles through a Mills Reaction and Cyclization Sequence

The Mills reaction and cyclization of readily available 2-aminobenzyl alcohols and nitrosobenzenes using thionyl bromide provided 2H-indazoles in up to 88 % yields. In the metal-free process, acetic acid played a crucial role for the both Mills reaction and cyclization. A brominated 2H-indazole could also be obtained through the one-pot sequence.     

Synthesis,Characterization, and Antimicrobial Evaluation of Sulfonamides Containing N-Acyl Moieties Catalyzed by Bismuth(III) Salts Under Both Solvent and Solvent-Free Conditions

Efficient N-acylation of sulfonamides with both readily available carboxylic acid chlorides and anhydrides has been carried out with catalysis by bismuth(III) salts including BiCl₃ and Bi (OTf)₃. The reactions proceed rapidly in both heterogeneous and solvent-free conditions and afforded the corresponding N-acylsulfonamides in good to excellent yields. The mild reaction conditions and low toxicity of bismuth salts make this procedure attractive and in close agreement with the goals of green chemistry. Some of the synthesized compounds were evaluated in vitro as antimicrobial agents against representative strains of Gram-positive (Staphylococcus aureus ATCC 25922, clinical strains of Staphylococcus aureus VISA and Enterococcus spp.) and Gram-negative bacteria (Pseudomonas aeruginosa ATCC 27853, clinical strains of Klebsiella pneumonia and Escherichia coli) and as antifungal agents against Candida albicans (clinically isolated) by both disc diffusion and minimal inhibition concentration (MIC) methods. All these bacteria and fungi studied were screened against some antibiotics to compare with our chemicals' zone diameters.     

Ab initio investigation of tautomeric stability,molecular structure,and internal rotation of methylphosphonic dicyanide,methoxydicyanophosphine, and their isocyano analogs

The equilibrium geometric parameters and structures of the transition states of internal rotation for MeP(O)(CN)₂, McOP(CN)₂, and their isocyano analogs, MeP(O)(NC)₂ and MeOP(NC)₂, have been calculated by theab initio SCF method and with inclusion of electron correlation effects according to the second-order Muuller-Plesset perturbation theory (MP2). At both levels the 6-31G* basis set has been used. The estimation of relative stability of these tautomeric forms depends largely on the calculation level. The total energies of the cyanides calculated by the MP2 method are 25–30 kcal mol^–1 lower than those of the corresponding isocyanides. The oxo-tautomeric forms containing four-coordinate phosphorus are 15–25 kcal mol^–1 more stable than the three-coordinate phosphorus aci-derivatives. The internal rotation potential curves of the aci-forms are characterized by a deep minimum for thetrans-arrangement of the methoxy group and phosphorus lone electron pair. Two additional less clearly pronounced minima are located symmetrically on both sides of the weak maximum, which corresponds to thecis-arrangement. The equilibrium oxo-form structures have a staggered configuration of the methyl group with respect to the phosphorus atom bonds.Translated from izvestiyaAkademii Nauk. Seriya Khimicheskaya, No. 5, pp. 1104–1115, May, 1996.     

Very Strong Organosuperbases Formed by Combining Imidazole and Guanidine Bases: Synthesis,Structure, and Basicity

New structural motives for organosuperbases, that are easy to prepare and highly basic are urgently required in many areas of chemistry. The synthesis of N,N′‐bis(imidazolyl)guanidine bases (BIG bases) is reported. Their pK_α values are determined as 26.1–29.3 in THF. They are thus probably the strongest known phosphorous‐free organic bases both in solution and in the gas phase. Calculations help to determine the structural and electronic factors giving rise to the high basicity.     

Decomposition kinetics of the N-bromoaminoacids,N-bromoalanine,N-bromo-2-aminobutyric acid,and N-bromonorvaline

A kinetic study of the decomposition reactions of N-bromoalanine, N-bromo-2-aminobutyric acid, and N-bromonorvaline shows them to be first-order with respect to N-bromoaminoacid concentration and independent of both excess aminoacid and pH over the interval pH 9–11. In this pH range the mean rate constants at 298 K were 1.20 × 10^?3 s^?1, 1.37 × 10^?3 s^?1 and 1.28 × 10^?3 s^?1, respectively. © 1993 John Wiley & Sons, Inc.     

Order,disorder, and geometrical information indices of molecules

Structural features of various molecular systems with symmetry of point groups ranging fromC ₁ to the icosahedral symmetry are analyzed in the framework of the model suggested previously for the evaluation of order and disorder in the arrangement of atoms in a molecule based on the equationQ = I -P/3n (whereQ is the index of order, andP is the number of independent coordinates needed to fix ann-atomic molecule in the Cartesian coordinate system). TheQ value depends on various structural parameters of the molecule: the number of atoms in it, the symmetry, the dimensionality, and the number of structural degrees of freedom. The disorder indexP/3n = 1 -Q correlates with Shannon's entropy of information, andQ correlates with negentropy or excess information; this makes it possible to useP/3n as a new geometrical information molecular index that is obtained by a nonprobabilistic method. Analysis of the relationship between order and chaos in molecular systems, as well as of the specific order indexq =Q/n, makes it possible to identify both general and specific features of molecules.Translated from Izvestiya Akadernii Nauk. Seriya Khimicheskaya, No. 8, pp. 191219-121927, August, 1996.     

Effects of physical aging on solubility,diffusivity, and permeability of propane and n-butane in poly(4-methyl-2-pentyne)

The effects of physical aging on the solubility, diffusivity, and permeability of propane and n-butane in a hydrocarbon-based disubstituted polyacetylene, poly(4-methyl-2-pentyne) (PMP), were studied. As the relative pressure of propane and n-butane increased, the solubility of both hydrocarbons increased. Like other glassy polymers, the sorption isotherms for propane and n-butane in all PMP films were concave to the relative pressure axis, indicating dual-mode sorption behavior. The diffusion of propane and n-butane in PMP followed typical Fickian diffusion in a plane sheet. The propane diffusivity in both the unaged and aged films increased with increasing concentration of propane sorbed in the film. The n-butane diffusivity in aged films also increased with increasing n-butane concentration. However, unaged films showed the opposite behavior: the diffusivity decreased with increasing n-butane concentration. These diffusion phenomena are a consequence of the interplay between thermodynamic and mobility factors. The permeabilities of propane and n-butane decreased monotonically with increasing penetrant concentration, similar to the behavior observed in other common glassy polymers. The relaxation of the nonequilibrium excess free volume in PMP films induced the decrease in both solubility and diffusivity. As a result, the permeability of propane and n-butane in PMP decreased upon physical aging. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 2407–2418, 2004     

Cloning, expression, and sequence analysis of diaminopropionate ammonia lyase gene from a nonvirulentsalmonella typhimurium PU011

Background: Seeds ofLathyrus sativus, a legume plant, contain 3-oxalyl and 2,3-dioxalyl DAP (O-DAP), neurotoxins which when consumed causes Neurolathyrism or Osteolathyrism, in humans, affecting nervous system and bone formation respectively. Some microorganisms viz virulent and non-virulentSalmonella typhimurium, Salmonella typhi and Pseudomonad have been shown to detoxifyL-α,β-diaminopropionate (DAP), the immediate precursor of O-DAP. Result: The gene coding for diaminopropionate ammonia lyase (DAPAL) which detoxifies DAP was cloned from nonvirulentS. typhimurium PU011 intoEscherichia coli DH5α and the nucleotides sequenced (1212 bp). Whereas the specific enzyme activity of DAPAL obtained from recombinantE. coli PU018 was 0.346 U/mg, the specific activity of the enzyme from nonvirulentS. typhimurium PU011 was 0.351 U/mg. The DAPAL corresponding to 43 kDa protein was found both in nonvirulentS. typhimurium PU011 andE. coli PU018. The Km value was found to be 0.740 mM and 0.680 mM forS. typhimurium PU011 and 0.741 mM and 0.683 mM forE. coli PU018 when grown in minimal medium (MM+DAP) andL. sativus seed extracts respectively, indicating that both of them were capable of utilizing the neurotoxins present inL. sativus seeds. The biomass, enzyme production and the effect of pH and temperature on DAPAL enzyme activity from both non-virulentS. typhimurium PU011 andE. coli PU018 were found to be similar. Conclusion: The recombinantE. coli PU018 as well as non-virulentS. typhimurium PU011 are as good as pathogenicS. typhimurium in detoxifying DAP, the immediate precursor of O-DAP present inL. sativus seeds.     

Correlation and prediction of partition coefficient between the gas phase and water, and the solvents dry methyl acetate, dry and wet ethyl acetate, and dry and wet butyl acetate

Experimental partition coefficient data have been compiled from the published literature for the water/methyl acetate, water/ethyl acetate and water/butyl acetate partition systems, log P data, and for the gas/methyl acetate, gas/ethyl acetate and gas/butyl acetate partition systems, log K data. Application of the Abraham solvation parameter model to the sets of partition coefficients leads to equations that correlate the log P data and log K data to 0.18 log units for the three dry alkyl acetate solvents. Slightly larger deviations were noted for solute partition into both wet ethyl acetate and wet butyl acetate. The derived correlations were validated using training set and test set analyses.     

Syntheses and Crystal Structures of LaRhMg,CeRhMg, PrRhMg,and NdRhMg

New intermetallic rare earth compounds LaRhMg, CeRhMg, PrRhMg, and NdRhMg were prepared by reaction of the elements in sealed tantalum tubes in a high‐frequency furnace. The compounds were investigated by X‐ray diffraction both on powders and single crystals. LaRhMg crystallizes with the LaNiAl type structure, space group Pnma, Z = 8, a = 760.1(2), b = 419.92(8), c = 1702.6(2) pm, wR2 = 0.0482, 740 F² values and 38 variable parameters. The cerium compound adopts the ZrNiAl structure: P6¯2m, Z = 3, a = 752.3(1), c = 417.6(1) pm, wR2 = 0.0497, 250 F²2 values and 17 variable parameters. PrRhMg and NdRhMg crystallize with the TiNiSi type: Pnma, Z = 4, a = 721.62(7), b = 415.98(4), c = 869.47(8) pm, wR2 = 0.1864, 440 F² values, 20 variables for PrRhMg and a = 720.6(1), b = 417.6(1), c = 868.8(1) pm, wR2 = 0.0779, 425 F² values, 22 variables for NdRhMg. Refinements of the occupancy parameters revealed mixed Mg/Rh occupancy for the magnesium sites of the cerium and the neodymium compound leading to the compositions CeRh_1.262(8)Mg_0.738(8) and NdRh_1.114(9)Mg_0.886(9) for the investigated single crystals. From a geometrical point of view, the four crystal structures are built up from different rhodium centered trigonal prisms. The rhodium and magnesium atoms form three‐dimensional [RhMg] networks in which the rare earth metal atoms are located in different types of channels. The networks show Rh—Mg and Mg—Mg bonding.