N-(1-萘基)-琥珀酰亚胺光谱性质与构象的计算机模拟

首次采用Materialsstudio软件中不同的交换-相关势能函数对N-(1-萘基)-琥珀酰亚胺进行密度泛函理论计算,通过与文献报道的B3LYP/6-311G**常规计算方法进行比较,以及MP2/6-311G**方法进行单点能计算,确认所采用方法计算N-(1-萘基)-琥珀酰亚胺分子最低能量构象更接近整个势能面的全局最小点;振动频率理论分析结果与N-(1-萘基)-琥珀酰亚胺化合物羰基振动双重分裂的红外光谱特征相吻合,表明红外光谱可以作为琥珀酰亚胺类化合物的重要表征方法;根据对N-(1-萘基)-琥珀酰亚胺、萘和萘胺的轨道分布和电荷密度进行理论分析,解释了N-(1-萘基)-琥珀酰亚胺化合物溶液的紫外和荧光的光谱特征,并进而可推断N-(1-萘基)-琥珀酰亚胺分子在溶液中的构象和理论计算得到的真空中最低能量构象相同,其二面角为94.995°。     

N-(1-萘基)琥珀酰亚胺分子间相互作用的计算机模拟

对分子间相互作用比较复杂的N-(1-萘基)琥珀酰亚胺进行理论计算时, 提出了将溶液构建和随机构象搜索相结合的多分子相互作用体系构建方法, 可以简单而准确地得到二聚体和三聚体结构, 其中二聚体结构和采用分子对接方法得到的结果完全一致. 经密度泛函理论计算, 得到了在真空条件下二聚体结构的最低能量构象. 对较大体系的三聚体结构采用高精度分子力学进行了理论计算. 通过分子间相互作用对分子构象的影响讨论了溶液结晶过程中N-(1-萘基)琥珀酰亚胺分子构象变化, 为该化合物结晶机理的深入研究提供重要依据.     

N-(1-萘基)琥珀酰亚胺玻璃态的晶化

采用X射线粉末衍射(XRD)和差示扫描量热分析(DSC)方法, 跟踪研究了N-(1-萘基)琥珀酰亚胺的液氮淬冷样品在室温(25 益)即在玻璃化转变温度以下的冷结晶行为. DSC和XRD的结果一致表明, 其冷结晶动力学曲线与熔融结晶完全不同, 呈现出“快-慢-快的三阶段增长趋势, 这一结果可以用低密度界面区成核和体积收缩效应给予解释.     

1,8-萘酰亚胺类衍生物的结构及紫外-可见吸收光谱

用密度泛函方法(DFT)优化了一系列1,8-萘酰亚胺衍生物, 用含时密度泛函(TDDFT)和导体极化连续模型(CPCM)计算了它们在气相、环己烷和二氯甲烷溶剂条件下的紫外可见吸收光谱. 计算结果表明, 优化的几何结构和X射线晶体结构数据吻合较好. 萘环4和5位胺基上取代基团(氢基、甲基、苯基和萘基)的变化使得它与萘酰亚胺部分的连接键长(N—C)变长、电荷转移增强、带隙降低. 溶剂化显色效应和前线轨道电子云一致表明此类物质的最大吸收峰对应π-π*跃迁. 异构体A中的分子内电荷转移增大和带隙的降低是它的紫外吸收光谱最大吸收峰比异构体B的发生红移的主要原因.     

芳醛缩N-(2-乙胺)-9,10-二氢蒽-9,10-桥-α,β-琥珀酰亚胺Schiff碱衍生物的合成及晶体结构

合成了2个N-(2-乙胺)-9,10-二氢蒽-9,10-桥-α,β-琥珀酰亚胺希夫碱衍生物,利用单晶X-射线衍射法测定了它们的晶体结构.化合物1为正交晶系,Pca21空间群,晶胞参数a=1.132 59(15)nm,b=2.535 6(4)nm,c=0.835 82(12)nm;α=90.00°,β=90.00°,γ=90.00°,V=2.4003(6)nm3,Z=4;化合物2为三斜晶系,P-1空间群,晶胞参数a=1.012 9(15)nm,b=1.190 1(16)nm,c=1.307 5(18)nm;α=67.17(3)°,β=72.88(3)°,γ=75.41(3)°,V=1.371(3)nm3,Z=2.     

1-萘基-琥珀酰亚胺的合成与结构性能研究

本文报道用α-萘胺和琥珀酸酐合成1-萘基-琥珀酰亚胺(NPr),并用FT-IR、DSC、X-射线衍射和荧光等方法研究了该化合物的结构与性能.DSC和X-射线衍射结果表明,纯净NPr的熔点与John L. Hubbard报道结果(147~149℃)不同,应为(158.3±0.2℃);熔融淬火样品仍存在部分结晶,并且在一定温度下发生冷结晶;FT-IR结果表明羰基伸缩振动产生反对称振动(1705 cm^-1)和对称振动(1779 cm^-1)的能级分裂;荧光光谱结果则进-步表明该化合物的电子云排布结构与单体萘环相似, 其原因可归于羰基的诱导效应和共轭效应对氮原子的影响.     

1,3-二(1-二茂铁磺酰基-2-苯并咪唑)丙烷的合成、单晶结构和量子化学研究

合成了新型的1,3-二(1-二茂铁磺酰基-2-苯并咪唑)丙烷(BFBP).用红外光谱、核磁、质谱和X射线单晶衍射对其结构进行了表征.该晶体结构属正交晶系,空间群为Pnma,晶胞参数为:a=1.30079(13)nm,b=2.9627(3)nm,c=1.01257(10)nm,y=3.9023(7)nm3,Dc=1.49...     

主体分子2,2′-二羟基-1,1′-二萘与客体分子乙酸乙酯晶态包结物的研究

用X射线单晶衍射分析法研究主体分子2，2’-二羟基-1，l’-二萘与客体分子乙酸乙酯（3：1）晶态包结物的晶体结构。其化学式为C64H50O8，Mr=947．08。晶体属三斜晶系，空间群为P1。晶胞参数：个独立衍射点，5823个可观察点（F≥3σF）。2，2’-二羟基-1，1’-二萘与乙酸乙酯形成以氢键联系的包结物3个主体分子中的6个羟基形成21环的氢键体系。     

DNAZ酰基衍生物的分子结构及量子化学研究

合成了3,3-二硝基氮杂环丁烷(DNAZ)的酰基衍生物N-乙酰基-3, 3-二硝基氮杂环丁烷(ADNAZ)和N-甲酰基-3,3-二硝基氮杂环丁烷(FDNAZ), 并得到可用于X射线衍射的单晶. ADNAZ属于正交晶系, P212121空间群, 晶胞参数a=0.6844(3) nm, b=0.6994(3) nm, c=1.6948(6) nm, V=0.8112 nm3, Z=4. FDNAZ属于单斜晶系, P21/c空间群, 晶胞参数a=1.0322(4) nm, b=0.6054(2) nm, c=1.1268(4) nm, β=100.135(5)°, V=0.6932 nm3, Z=4. 用ADF(Amsterdam density functional)的DFT(Density functional theory)方法对两个化合物进行了几何优化和频率计算, 得到了其几何构型参数、原子Hirshfeld电荷、原子间Mayer键级和前线轨道能量及组成. 理论分析表明, 两个化合物中活性较大的原子均为酰基氧原子.     

巯基乙酸锑(Ⅲ)配合物合成与晶体结构

以三氧化二锑和巯基乙酸在水溶液中反应合成了配合物HSb(SCH2COO)2,并通过元素分析、红外光谱、X射线粉末衍射进行了表征，利用单晶X射线四圆衍射法测定了晶体结构，结果表明该配合物晶体属于单斜晶系，C2/c空间群，晶胞参数为:a=1.40005(8)nm,b=1.19121(8)nm,c=1.23588(8)nm,β=126.822(1)°,V=1.6499(2)nm^3,Dc=2.439g·cm^-3,Z=8,R1=0.0250。并对X射线粉末衍射数据进行了指标化，其结果与单晶数据吻合。     

Characterizing challenging microcrystalline solids with solid-state NMR shift tensor and synchrotron X-ray powder diffraction data: structural analysis of ambuic acid

Synchrotron X-ray powder diffraction and solid-state (13)C NMR shift tensor data are combined to provide a unique path to structure in microcrystalline organic solids. Analysis is demonstrated on ambuic acid powder, a widely occurring natural product, to provide the complete crystal structure. The NMR data verify phase purity, specify one molecule per asymmetric unit, and provide an initial structural model including relative stereochemistry and molecular conformation. A refinement of X-ray data from the initial model establishes that ambuic acid crystallizes in the P2(1) space group with unit cell parameters a = 15.5047(7), b = 4.3904(2), and c = 14.1933(4) A and beta = 110.3134(3) degrees . This combined analysis yields structural improvements at two dihedral angles over prior NMR predictions with differences of 103 degrees and 37 degrees found. Only minor differences of +/-5.5 degrees , on average, are observed at all remaining dihedral angles. Predicted hydroxyl hydrogen-bonding orientations also fit NMR predictions within +/-6.9 degrees . This refinement corrects chemical shift assignments at two carbons and reduces the NMR error by approximately 16%. This work demonstrates that the combination of long-range order information from synchrotron powder diffraction data together with the accurate shorter range structure given by solid-state NMR measurements is a powerful tool for studying challenging organic solids.     

X射线粉末衍射从头晶体结构测定: [Co(NH~3)~5Br]Br~2 配合物的晶体结构

总结了粉末衍射从头晶体结构测定中的问题与对策,并采用常规X射线粉末衍射数据,从头测定了配合物[Co(NH~3)~5Br]Br~2的晶体结构。在指标化与分峰基础上,采用直接法获得含7个独立非H原子的粗结构。在10°～80°(2θ)范围内用3500个强度数据对38个参数作Rietveld精修,得到了[Co(NH~3)~5Br]Br~2的晶体结构。其晶胞参数为a=1.3692(1)nm,b=1.0707(1)nm,c=0.6940(1)nm,V=1.0175(1)nm^3,Z=4。空间群:Pnma,品质因子:M~2~0=49,F~3~0=93(0.0075,43),结构吻合因子:R~p=0.066,R~w~p=0.090,R~F=0.041,R~B=0.042。     

Powder diffraction study of a coordination polymer comprised of rigid building blocks: [Rh2(O2CCH3)4.mu2-Se2C5H8-Se,Se']infinity

The crystal structure of a new hybrid product comprised of two rigid building blocks, namely dirhodium(II) tetraacetate, [Rh(2)(O(2)CCH(3))(4)] (1), and 2,6-diselenaspiro[3.3]heptane, Se(2)C(5)H(8) (2), has been solved ab initio using laboratory source X-ray powder diffraction (XRPD) data. The rigid body refinement approach has been applied to assist in finding an adequate model and to reduce the number of the refined parameters. Complex [Rh(2)(O(2)CCH(3))(4).mu(2)-Se(2)C(5)H(8)-Se,Se'] (3) conforms to the triclinic unit cell with lattice parameters of a = 8.1357(4), b = 8.7736(4), and c = 15.2183(8) A, alpha = 77.417(3), beta = 88.837(3), and gamma = 69.276(4) degrees, V = 989.66(8) A(3), and Z = 2. The centrosymmetric P space group was selected for calculations. The final values of the reduced wR(p), R(p), and chi(2) were calculated at 0.0579, 0.0433, and 5.95, respectively. The structure of 3 is a one-dimensional zigzag polymer built on axial Rh...Se interactions at 2.632(6) A. The 2,6-diselenaspiro[3.3]heptane ligand acts as a bidentate linker bridging dirhodium units via both selenium atoms. The geometrical parameters of individual groups for rigid body refinement have been obtained from X-ray powder data for dirhodium(II) tetraacetate (1) and from single-crystal X-ray diffraction for diselenium molecule 2. The crystal structures of 1 and 2 are reported here for the first time. For 1 indexing based on XRPD data has resulted in the triclinic unit cell P with lattice parameters of a = 8.3392(7), b = 5.2216(5), and c = 7.5264(6) A, alpha = 95.547(10), beta = 78.101(6), and gamma = 104.714(13) degrees, V = 309.51(5) A(3), and Z = 1. The final values were wR(p) = 0.0452, R(p) = 0.0340, and chi(2) = 1.99. The 1D polymeric motif built on axial Rh.O interactions of the centrosymmetric dirhodium units has been confirmed for the solid-state structure of 1. Compound 2,6-diselenaspiro[3.3]heptane (2) conforms to the monoclinic space group P2(1)/c with the unit cell parameters of a = 5.9123(4), b = 19.6400(13), and c = 5.8877(4) A, beta = 108.5500(10) degrees, V = 648.15(8) A(3), and Z = 4.     

Structure and NMR assignment in calcined and as-synthesized forms of AlPO-14: a combined study by first-principles calculations and high-resolution 27Al-31P MAS NMR correlation

The high-resolution 27Al and 31P NMR spectra of two as-synthesized forms of the microporous aluminophosphate AlPO-14 and the corresponding calcined-dehydrated form were assigned using both "first-principles" calculations of NMR parameters (GIPAW, as implemented in NMR-CASTEP) and a 27Al-31P heteronuclear correlation NMR experiment (MQ-J-HETCOR) that exploits 27Al multiple-quantum coherences and J couplings to identify Al-O-P linkages. NMR parameters calculated from published AlPO-14 crystal structures, which are derived from powder X-ray diffraction (XRD) data, are in poor agreement with experiment and it was necessary to optimize the structure geometry using energy minimization before satisfactory agreement was obtained. Comparison of simulated powder XRD patterns from the experimental and the energy-minimized structures shows that the changes in relative atomic positions in the optimized structure are relatively small and yield only minor adjustments in the Bragg peak intensities. These results indicate that a combination of NMR spectroscopy and first-principles calculation of NMR parameters may soon be considered a generally useful step in the refinement of the structures of microporous materials derived from powder diffraction data.     

Crystal growth, structure, and physical properties of LnCu2(Al,Si)5 (Ln = La and Ce)

LnCu(2)(Al,Si)(5) (Ln = La and Ce) were synthesized and characterized. These compounds adopt the SrAu(2)Ga(5) structure type and crystallize in the tetragonal space group P4/mmm with unit cell dimensions of a ≈ 4.2 ? and c ≈ 7.9 ?. Herein, we report the structure as obtained from single crystal X-ray diffraction. Additionally, we report the magnetic susceptibility, magnetization, resistivity, and specific heat capacity data obtained for polycrystalline samples of LnCu(2)(Al,Si)(5) (Ln = La and Ce).     

Neutron powder‐profile study of chlorofluoromethane

The crystal structure of chloro­fluoro­methane, CH₂ClF, has been determined at 100 and 30 K using indexing, packing considerations and Rietveld refinement of neutron powder profiles. There is only one phase, in monoclinic space group P2₁ and with two mol­ecules in the unit cell occupying general positions. The structure has close packing in several directions and there are weak hydrogen bonds forming zigzag chains.     

A solid-state NMR method for solution of zeolite crystal structures

Since zeolites are notoriously difficult to prepare as large single crystals, structure determination usually relies on powder X-ray diffraction (XRD). However, structure solution (i.e., deriving an initial structural model) directly from powder XRD data is often very difficult due to the diffraction phase problem and the high degree of overlap between the individual reflections, particularly for materials with the structural complexity of most zeolites. Here, we report a method for structure determination of zeolite crystal structures that combines powder XRD and nuclear magnetic resonance (NMR) spectroscopy in which the crucial step of structure solution is achieved using solid-state (29)Si double-quantum dipolar recoupling NMR, which probes the distance-dependent dipolar interactions between naturally abundant (29)Si nuclei in the zeolite framework. For two purely siliceous zeolite blind test samples, we demonstrate that the NMR data can be combined with the unit cell parameters and space group to solve structural models that refine successfully against the powder XRD data.     

Characterization and ab initio XRPD structure determination of a novel silicate with Vierer single chains: the crystal structure of NaYSi2O6

The crystal structure of a sodium yttrium silicate with composition NaYSi2O6 has been determined from laboratory X-ray powder diffraction data by simulated annealing, and has been subsequently refined with the Rietveld technique. The compound is monoclinic with space group P2(1)/c and unit cell parameters of a=5.40787(2) A, b=13.69784(5) A, c=7.58431(3) A, and beta=109.9140(3) degrees at 23.5 degrees C (Z=4). The structure was found to be a single-chain silicate with a chain periodicity of four. The two symmetry dependent [Si4O12] chains in the unit cell are parallel to c. A prominent feature is the strong folding of the crankshaft-like chains within the b,c-plane resulting in intrachain Si-Si-Si angles close to 90 degrees. The coordination of the Y3+ ions by O2- is 7-fold in the form of slightly irregular pentagonal bipyramids, with oxygen atoms from four different chains contributing to the coordination polyhedron. Na+ ions are irregularly coordinated by 10 oxygens from two neighboring chains. No disorder of Na+ and Y3+ between the two nontetrahedral cation sites could be observed. Furthermore, micro-Raman spectra have been obtained from the polycrystalline material.     

Powder pattern indexing using the weighted crosscorrelation and genetic algorithms

X-ray diffraction is a powerful technique for investigating the structure of crystals and crystalline powders. Unfortunately, for powders, the first step in the structure elucidation process, retrieving the unit cell parameters (indexing), is still very critical. In the present article, an improved approach to powder pattern indexing is presented. The proposed method matches peak positions from experimental X-ray powder patterns with peak positions from trial cells using a recently published method for pattern comparison (weighted crosscorrelation). Trial cells are optimized with Genetic Algorithms. Patterns are not pretreated to remove any existing zero point shift, as this is determined during optimization. Another improvement is the peak assignment procedure. This assignment is needed for determining the similarity between lines from trial cells and experiment. It no longer allows calculated peaks to be assigned twice to different experimental peaks, which is beneficial for the indexing process. The procedure proves to be robust with respect to false peaks and accidental or systematic absensences of reflections, and is successfully applied to powder patterns originating from orthorhombic, monoclinic, and triclinic compounds measured with synchrotron as well as with conventional laboratory X-ray diffractometers.