Coordination dimers constructed from metal(II) halides and the organic ligand 1,2-dimethoxy- 4,5-bis(2-pyridylethynyl)benzene

A series of new coordination compounds has been synthesized using the organic ligand 1,2-dimethoxy-4,5-bis(2-pyridylethynyl)benzene (dmpeb). The compounds all form dimers consisting of two metal cations bridged by two ligand molecules. Charge balance is provided by halide ligands, and the four-coordinate metal centers are distorted from the ideal tetrahedral environment. [CoCl₂(dmpeb)]₂ (1) crystallizes in the monoclinic space group P2₁/n with a = 8.5272(6) Å, b = 18.3653(13) Å, c = 13.3493(9) Å, β = 103.574(2)^°, V = 2032.2(2) ų, Z = 2. [ZnCl₂(dmpeb)]₂ (2) is isostructural to 1 and has the cell parameters a = 8.5495(4) Å, b = 18.4049(8) Å, c = 13.3692(6) Å, β = 103.4460(10)^°, V = 2046.01(16) ų, Z = 2. [ZnBr₂(dmpeb)]₂ (3) is also isostructural to 1 with a = 8.7882(5) Å, b = 18.7260(12) Å, c = 13.3857(8) Å, β = 102.5990(10)^°, V = 2149.8(2) ų, Z = 2. Additionally, the compounds [ZnI₂(dmpeb)]₂ (4, cell parameters: a = 8.9650(5) Å, b = 19.1251(10) Å, c = 13.4160(7) Å, β = 101.1660(10)^°, V = 2256.7(2) ų, Z = 2), [HgCl₂(dmpeb)]₂ (5, cell parameters: a = 8.8457(7) Å, b = 18.4030(15) Å, c = 13.3711(11) Å, β = 104.246(2)^°, V = 2109.7(3) ų, Z = 2), and [HgBr₂(dmpeb)]₂ (6, cell parameters: a = 9.0576(5) Å, b = 18.8634(11) Å, c = 13.4535(8) Å, β = 102.9780(10)^°, V = 2239.9(2) ų, Z = 2) are also isostructural to 1. A seventh dimeric compound, [HgI₂(dmpeb)]₂, not isostructural to the others was also characterized by X-ray crystallography. [HgI₂(dmpeb)]₂ (7) crystallizes in the triclinic space group P-1 with a = 8.8028(5) Å, b = 12.0990(7) Å, c = 12.4082(7) Å, α = 109.7240(10)^°, β = 107.3680(10)^°, γ = 93.0880(10)^°, V = 1169.57(12) ų, Z = 1.     

Intra- vs intermolecular hydrogen bonding. The crystal structure of 5-methyl-2-hydroxyacetophenone thiosemicarbazone monohydrate and salicylaldehyde-2-methylthiosemicarbazone monohydrate

The crystal structure of 5-methyl-acetophenonethiosemicarbazone monohydrate,A, and salicylaldehyde-2-methylthiosemicarbazone monohydrate,B, were determined using single crystal X-ray diffraction.A crystallizes in the monoclinic space groupC2/c, with lattice parametersa=14.161(2),b=15.753(1) Å,c=11.084(1) Å, β=112.59(1)° andZ=4, yielding a calculated density ofD _calc=1.352 mg/m³.B crystallizes in the triclinic space groupP1, witha=7.233(2) Å,b=7.371(2) Å,c=11.841(2) Å, α=82.77(2)°, β=78.33(2)°, γ=63.06(2)° andD _calc=1.371 mg/m³ forZ=2,. In bothA andB the immine nitrogen and the sulfur atom areanti with respect to N2-C8. WhileA presents the usual intramolecular six membered hydrogen bond ring,B has instead an intermolecular hydrogen bond between the hydroxy moiety of the salicyladehyde and a water molecule. AM1 calculations agree with the experimental conformations observed in both compounds.     

Synthesis,Crystal Structure,and Free Radical Scavenging Activity of 4-Aminopyridinium 3,5-Dinitrobenzoate

The crystal structure of 4-aminopyridinium 3,5-dinitrobenzoate, C₁₂H₁₀O₆N₄, has been determined by single-crystal X-ray diffraction technique. The title compound crystallizes in the monoclinic sp. gr. P21/n with the unit cell parameters: a = 7.4726(3) Å, b = 23.0898(9) Å, c = 8.0744(4) Å, V = 1338.64(10) ų, Z = 4. The asymmetric unit of the compound consists of one 3,5-dinitrobenzoate anion and 4-aminopyridine cation. The adjacent anions and cations are linked through two N?H···O hydrogen bonds, N2?H2A···O5 and N₂?H2B···O6, to form an infinite chain of anions and cations, extended along the [010] direction.     

Crystal structures of two modifications of sodium pentahydrogendiphosphate NaH5(PO4)2

Two crystalline modifications of NaH₅(PO₄)₂ are obtained by the reaction of Na₂CO₃ with an excess of orthophosphoric acid. The crystal structures of α-and β-NaH₅(PO₄)₂ are determined by X-ray diffraction analysis. The crystal data are a = 8.484(4) Å, b = 7.842(3) Å, c = 10.353(4) Å, β = 90.50(3)°, V = 689.3(3) ų, space group P2₁/c, Z = 4, and R ₁ = 0.0250 for the α modification and a = 7.127(2) Å, b = 13.346(4) Å, c = 7.177(2) Å, β = 95.5(2)°, V = 679.5(3) ų, space group P2₁/c, Z = 4, and R ₁ = 0.0232 for the β modification. Based of the hydrogen-bond system, the formulas of the α and β modifications can be represented as Na(H₂PO₄)(H₃PO₄) and Na[H(H₂PO₄)₂], respectively. They correspond to the stable and metastable forms of the compound.     

X-ray structure analysis of 3β-hydroxy-4-(1,4-oxazin-4-yl)-androstane (C31H54NO2)

The crystal structure of 3β-hydroxy-4-(1,4-oxazin-4-yl)-androstane (C₃₁H₅₄NO₂) has been determined by X-ray crystallographic techniques. The compound crystallizes in the orthorhombic space group P2₁2₁2 with the following unit-cell parameters: a = 7.124(1) Å, b = 10.127(1) Å, c = 40.660(1) Å, V = 2933.4(1) ų, and Z = 4. The structure has been solved by direct methods and refined to an R factor of 0.067. Three six-membered rings, A, C, and E, exist in the chair conformation, while the ring B adopts a distorted half-chair conformation. The five-membered ring, D, has a distorted envelope conformation. The crystal structure is stabilized by strong intermolecular O-H...O hydrogen bonds.     

Crystal structure of double vanadates Ca9 R(VO4)7. II. R = Tb, Dy, Ho, and Y

Crystal structures of the compounds Ca₉ R(VO₄)₇ (R = Tb (I), Dy (II), Ho (III), and Y (IV) have been studied by the method of the full-profile analysis. All the compounds are crystallized in the trigonal system (sp. gr. R 3 c, Z = 6) with the unit-cell parameters (I) a = 10.8592(1), c = 38.035(1), V = 3884.2(2) ų; (II) a = 10.8564(1), c = 38.009(1) Å, V = 3879.6(2) ų, (III) a = 10.8565(1) and c = 37.995(1) Å, V = 3878.3(2) ų, and (IV) a = 10.8588(1), c = 37.995(1) Å, V = 3879.9(2) ų. In structures I–IV, rare earth and calcium cations occupy three positions—M(1), M(2), and M(5). Rare earth cations occupy the R ³⁺ positions almost in the same way: 2.7–2.6(2) cations in the M(1) position; 2.7–2.3(2) cations in the M(2) position, and 0.6–1.0(1) cation in the M(5) position. At the same time, the occupancy of the M(5) position regularly increases with a decrease of the R ³⁺ radius.     

Crystal structure of {NH2C(NHC6H5)2}3[UO2(C2O4)2(NCS)] · 1.25H2O

Synthesis and X-ray diffraction study of {NH₂C(NHC₆H₅)₂}₃[UO₂(C₂O₄)₂(NCS)] · 1.25H₂O single crystals have been performed. This compound is crystallized in the orthorhombic system, with the unit-cell parameters a = 45.2646(8) Å, b = 57.7359(11) Å, c = 7.9244(3) Å, sp. gr. Fdd2, Z = 16, V = 20 709.6(10) ų, and R = 0.0477. The uranium-containing structural units of the crystals are one-core groups of the [UO₂(C₂O₄)₂(NCS)]^3? composition, belonging to the crystallochemical group AB ₂ ⁰¹ M ¹ (A = UO ₂ ⁺² , B ⁰¹ = C₂O ₄ ^2? , M ¹ = NCS^?) of uranyl complexes. The uranium-containing complexes are connected into a three-dimensional framework owing to the electrostatic interactions with the outer-sphere cations and a system of hydrogen bonds.     

Carbon–hydrogen and carbon–phosphorus bond cleavage in a triruthenium cluster complex containing dppm: The crystal and molecular structures of Ru3(CO)6{μ 3-OPPh2 C2H(C6H4)PPhCH2PPh}(μ 3-OPPh2)Ph and Ru3(CO)6 {μ-OPPh2C2H(C6H4)PPhO}(μ-PPh2)(μ-PPh2O)

The crystal and molecular structures of Ru₃(CO)₆{μ ₃-OPPh₂C₂H(C₆H₄)PPhCH₂PPh}-(μ ₃-OPPh₂)Ph (1) and Ru₃(CO)₆{μ-OPPh₂C₂H(C₆H₄)PPhO}(μ-PPh₂)(μ-PPh₂O) (2) have been determined by single crystal X-ray diffraction. Both complexes contain oxygen atoms oxidatively inserted into phosphorus–ruthenium bonds, and unique σ/π multidentate ligands formed from C $---{\text{H}}$ H and C $--$ P bond cleavage in bis(diphenylphosphino)acetylene and bis(diphenylphosphino)methane. Complex 1 crystallized in the triclinic space group ${\bar 1}$ , with lattice parameters a = 11.642(4) Å, b = 15.018(5) Å, c =16.587(5) Å, α = 2.48(3)°, β = 76.47(2)°, γ = 70.35(3)°, V = 2651.1(15) ų, Z = 2. Complex 2 crystallized in the centered monoclinic space group, C2/c, with lattice parameters a = 34.467(4) Å, b = 14.274(2) Å, c = 23.258(3) Å, β = 5.29(1)°, V = 11394(3) ų, Z = 8.     

Crystal structure of 3-amino-5-acetyl-4,7-dihydro-6-methyl-4-(2-nitrophenyl)-2-cyanothieno[2,3-b]-pyridine and specific features of its molecular packing in crystal

The molecular and crystal structures of 3-amino-5-acetyl-4,7-dihydro-6-methyl-4-(2-nitrophenyl)-2-cyanothieno[2,3-b]-pyridine is determined by X-ray diffraction. The unit-cell parameters are as follows: a = 14.68(1) Å, b = 8.704(5) Å, c = 25.36(1) Å, V = 3241(6) ų, d _calcd = 1.453 g/cm³, Z = 8(1,1), and space group Pna2₁. Theo-nitrophenyl substituent is synperiplanar relative to the hydrogen atom at the C(4) atom of the heterocycle. Two crystallographically independent reference molecules A and B in the structure can be considered a pair of the enantiomers related by an approximate noncrystallographic center of inversion. The degree of approximation of this pseudocenter is discussed. It is shown that the structure can be described as a combination of two systems of translationally equal layers. The pseudosymmetry of the crystal structure and the possibility of forming a similar molecular packing with a higher crystallographic symmetry are considered.     

The Preparation and Crystal Structure of MgP4

In the systematical study of the A¹¹B^V semiconducting compounds the Mg-P system has been examined. Among the products of crystallization from Bi Pb Sn alloy the crystals of a new compound MgP₄ have been identified. It has been found that these crystals are isostructural with CdP₄. The crystal structure refinement from X-ray data has been performed. The lattice constants are: a = 5.141 Å, b = 5.079 Å, c = 7.518 Å, β = 98.64°; Z = 2; space group P2₁/c.     

Crystal structure of 4-phenyl-3,5-dioxacyclohexyl-1, 1′-cyclopentane-2′,3″-(1,5,8,11-tetraoxacyclotridecane)

The structure of the title compound is determined by X-ray diffraction (DAR-UMB diffractometer, θ-θ/2θ scan mode, MoK _α radiation, direct method). The crystal is monoclinic, a = 24.582(6) Å, b = 22.812(8) Å, c = 8.647(3) Å, γ = 60.64(2)°, ρ _calcd = 1.232 g/cm³ space group A2/a, and Z = 8 for C₂₂H₃₂O₆. The molecule consists of four fragments: 13-crown-4 (A), 1,3-dioxane (B), a five-membered ring (C) acting as a bridge between fragments A and B, and a phenyl ring (D). Introduction of the bulky ring C as a bridge into the molecule results in significant deviations (up to ±0.014 Å) of the ether O atoms from planarity. The conformation of the macrocyclic fragment is [3433] according to the Dale notation. The C—H?O 1,4-interactions, which are energetically favorable occur in the propylene part of 13-crown-4: the C(2)?O(5) and C(4)?O(1) distances are 2.82 Å. The molecules in the structure form planar networks parallel to the xy plane. The intermolecular contacts correspond to the van der Waals interactions.     

Crystallographic analysis of the structure of livingstonite HgSb<Subscript>4</Subscript>S<Subscript>8</Subscript> from refined data

An X-ray diffraction study of mineral livingstonite (HgSb₄S₈) from Khaydarkan (Kyrgyzstan) has been performed on a Bruker Nonius X8Apex diffractometer with a 4K CCD detector (R = 0.031). The unit-cell parameters were found to be a = 30.1543(10) Å, b = 3.9953(2) Å, c = 21.4262(13) Å, β = 104.265(1)°, V = 2501.7(2) ų, Z = 8, d _calcd = 5.013 g/cm³, and sp. gr. A2/a. It was confirmed that livingstonite belongs to rod-layers structures. In one type of layer, two double Sb₂S₄ chains are bound by disulfide groups [S₂]^2? (S-S 2.078(2) Å); in the other type, these chains are bound via Hg²⁺ cations. A crystallographic analysis confirmed the existence of independent pseudotranslational ordering in the cation and anion matrices, which is characteristic of the lozenge-like structures of sulfides and sulfosalts.     

Crystal structures of 1,1′-di(methylacetato)- and 1,1′-di(chloroethoxyethyl)-2,2′-biimidazole

1,1′-Di(methylacetato)-2,2′-biimidazole, C₁₂H₁₄N₄O₄, crystallizes from methanol in the space groupP2 ₁/c, wherea=9.535(2),b=13.385(2),c=5.1208(8) Å,V=652.2(2) ų, andZ=4.1,1′-Di(chloroethoxyethyl)-2,2′-biimidazole, C₁₄H₂₀Cl₂N₄O₂, crystallizes from cyclohexane in the space groupPbca, wherea=12.372(2),b=8.959(2),c=14.840(2) Å,V=1644.9(5) ų, andZ=8. The structures were refined toR=0.041 (1380 observed reflections) andR=0.043 (3243 observed reflections), respectively. Both molecules crystallize with coplanar rings and the substituents assume atrans configuration with a center of inversion between the bridging carbon atoms.     

Crystallographic analysis of Royline monohydrate [C25H41NO7 · H2O]

The crystal and molecular structures of the alkaloid Royline {(1α,6β,14α, 16β)-20-ethyl-4-hydroxymethyl)-1,6,14,16-tetramethoxyaconitane-7,8-diol} with a water molecule has been determined by X-ray diffraction analysis. The compound crystallizes in the space group P2₁ with the unit cell parameters a = 10.985(1) Å, b = 7.898(1) Å, c = 14.956(1) Å, β = 102.96(1)°, V = 1264.52 ų, Z = 2, λMoK _α = 0.71073 Å, and R = 0.033 for 2067 observed reflections. Rings A, B, and C adopt a chair conformation, ring D is a half-boat, ring E is a half-chair, and ring F is in an envelope conformation with C(14) at the flap. Molecules are linked together in the crystal by hydrogen bonds.     

Synthesis and crystal structure of 3,10-dimethyl-10H-dibenzo[b,e]iodinium tetrafluoroborate

The crystal and molecular structures of a chiral cyclic iodonium salt, namely, 3,10-dimethyl-10H-dibenzo[b,e]iodinium tetrafluoroborate, is solved by the direct method (a = 20.678(5) Å, b = 20.738(5) Å, c = 8.408(2) Å, γ =120.404(5)° Z = 4, sp. gr. P2₁/b). The crystals of the title compound consist of the iodonium cations and the BF ₄ ^? anions. The benzene rings A and B of the cations are planar. The angles between these rings are 56.1(4)° and 58.3(4)° in two independent molecules, and the rings are virtually coplanar with the corresponding halves of the central heterocycle C adopting the I,C(3)-boat conformation. The structural units are packed in the crystal so that each I atom forms short contacts with the fluorine atoms of two independent anions.     

Molecular structures of chalcone podands: A prognosis of photoinduced transformations in the crystals

A series of chalcone podands with the propenone group in the ortho position of the bridging aryl substituent with respect to the oxyethylene fragment is synthesized. The influence of the preorganization of the chalcone podand molecules in crystals on their ability to participate in topochemical reactions is investigated. From analyzing the X-ray structural data, the highest probability of the solid-state photochemical [2 + 2]cycloaddition is predicted for podands with phenyl substituents and the oxyethylene fragment containing two or three oxygen atoms. The X-ray structural data for the chalcone podand C₃₂H₂₆O₄ (3a) are as follows: a = 7.904(9) Å, b = 14.92(2) Å, c = 21.30(3) Å, β = 91.7(1)°, monoclinic system, space group P2₁/c, Z = 4, V = 2510(5) ų, ρ = 1.26 g/cm³, and R = 0.046; C₃₄H₃₀O₅ (3b): a = 15.738(9) Å, b = 11.889(2) Å, c = 15.0830(15) Å, β = 105.47(14)°, monoclinic system, space group C2/c, Z = 4, V = 2720.0(9) ų, ρ = 1.266 g/cm³, and R = 0.0418; C₃₂H₂₄N₂O₈ (4a): a = 17.9416(18) Å, b = 10.9703(8) Å, c = 41.699(2) Å, β = 105.970(11)°, monoclinic system, space group P2₁/c, Z = 4, V = 2781.4(5) ų, ρ = 1.348 g/cm³, and R = 0.0426; C₃₆H₃₂N₂O₁₀ (4c): a = 7.6286(5)Å, b = 17.9398(10) Å, c = 11.5890(3)Å, β = 95.287(4)°, monoclinic system, space group P2₁/n, Z = 2, V = 1579.27(14) ų, ρ = 1.372 g/cm³, and R = 0.0377; and C₂₈H₂₂O₆ (5a): a = 15.6032(10) Å, b = 8.1131(5) Å, c = 17.7334(11) Å, β = 91.381(5)°, monoclinic system, space group C2/c, Z = 4, V = 2244.2(2) ų, ρ = 1.345 g/cm³, and R = 0.0309.     

Crystal structure of 5α-cholest-6-one

The crystal and molecular structure of the steroid 5α-cholest-6-one has been determined by X-ray diffraction analysis. The compound crystallizes in space group P2₁ with the unit cell parameters a = 10.575(1) Å, b = 7.698(1) Å, c = 15.284(2) Å, β= 99.34(1)°, V = 1227.72 ų, Z = 2, and R = 0.054 for 1634 observed reflections. The six-membered rings (A, B, and C) have the chair conformations, whereas the five-membered ring Dis intermediate between 13β-envelope and 13β-14α half-chair. All the rings of the steroid skeleton are trans connected. The molecules are linked together by the intermolecular C-H?O hydrogen bonds.     

The structure of solvate [Cu2(DfH)4(4,4′-Bipy)] · 2DMF

The crystal structure of [Cu₂(DfH)₄(4,4′-Bipy)] · 2DMF prepared by the reaction of copper(II) acetate with diphenylglyoxime (DfH₂) and 4,4′-bipyridine (4,4′-Bipy) was established by X-ray diffraction. The crystals are monoclinic; a = 15.5192(9) Å, b = 16.2427(11) Å, c = 14.0753(7) Å, β = 101.36(3)°, V = 3478.5(5) ų, Z = 2, and sp. gr. P2₁/c. The crystal structure is composed of discrete dinuclear molecules [Cu₂(DfH)₄(4,4′-Bipy)] and dimethylformamide (DMF) molecules. The coordination polyhedron of the Cu atom (the coordination number is 5) is a tetragonal bipyramid formed by the nitrogen atoms of two monodeprotonated bidentate oxime groups and the bidentate bridging 4,4′-Bipy ligand. The DMF molecules occupy the cavities formed by the dinuclear molecules [Cu₂(DfH)₄(4,4′-Bipy)]. The compound was characterized by IR and NMR spectroscopy.     

Aryl acetylene inhibitors for cytochrome P450-based monooxygenase isozymes

The structures of 1-propynylpyrene (1), 4-ethynylbiphenyl (2), 3-ethynylphenanthrene (3), 9-propynylphenanthrene (4) and 9-ethynylphenenthrene (5) have been determined using MoKα radiation.1 crystallizes in the monoclinic space groupP2₁/n witha=8.972(2)b=10.136(2),c=14.060(2)Å, β=99.77(1)°,V=1260.0(7) ų,Z=4. Refinement of 1261 reflections gaveR=0.042 andR _w =0.054.2 crystallizes in the orthorhombic space groupPbcn witha=17.7159(9),b=6.250(2),c=18.544(2) Å,V=2053(1) ų,Z=8. Refinement of 1710 observed reflections gaveR=0.046 andR _w =0.053.3 crystallizes in the orthorhombic space group Pbca witha=7.891(1),b=16.459(1),c=16.879(2) Å,V=2192.2(7) ų,Z=8. Refinement of 1520 observed reflections gaveR=0.032 andR _w =0.047.4 crystallizes in the orthorhombic space groupP2₁2₁2₁ witha=5.8867(6),b=13.476(1).c=14.838(2) Å,V=1177.1(4) ų,Z=4. Refinement of 1217 observed reflections gaveR=0.041 andR _w =0.055.5 crystallizes in the monoclinic space groupP2₁/c witha=27.755(7),b=5.1447(9),c=15.500(2) Å, β-105.53(2)°,Z=2133(2) ų,Z=8. There are two independent molecules in the unit cell. Refinement of 1276 observed reflections gaveR=0.061 andR _w =0.065. In2–5 there are no significant intermolecular interactions while in1 the molecules are associated in pairs via π-π stacking intarctions. Bond distances within the pyrene and phenanthrene portions of the molecules compare favorably with those found in other derivatives.     

Crystal structure of Pr2B5 boride

The crystal structure of Pr₂B₅ boride of a new type was established by single-crystal X-ray diffraction analysis; sp. gr. C2/c, a = 15.1603(4) Å, b = 7.2771(2) Å, c = 7.3137(2) Å, β = 109.607(2)°, 2068 reflections, R _F = 0.041, R _w = 0.055. The Pr₂B₅ structure is similar to the Gd₂B₅ structure.