Preparation and spectroscopic characterization of iron(II) and copper(II) complexes of a functionalized crown ether

Condensation between 4′-aminobenzo-15-crown-5- and 4-antipyrinecarboxaldehyde yielded the functionalized crown ether (L = 1,5-dimethyl-4-[(2,3,5,6,8,9,11,12-octahydro-1,4,7,10,13-benzopentaoxacyclopentadecin-15-ylimino)methyl]-2-phenyl-1,2-dihydro-3H-pyrazol-3-one). A 1:1 (Na⁺:L) complex has been prepared. The reaction of Fe(II) and Cu(II) salts with L gave complexes of composition [Fe(L)Cl₂] and [Cu(L)₂Cl₂]. Heteronuclear complexes [Fe(L)Cl₂Na]ClO₄ and [Cu(L)₂Cl₂Na]ClO₄ have also been synthesized from the reactions of [Fe(L)Cl₂] and [Cu(L)₂Cl₂] with NaClO₄. The compounds have been characterized by microanalyses and spectroscopic methods.     

Oxidation of electron deficient olefins using a copper(II) complex based on a bis-benzimidazole diamide ligand

New bis-benzimidazole based diamide ligands N, N′-bis(2-methyl benzimidazolyl)-benzene-1,3-dicarboxamide [GBBA] and N-Octyl-N, N′-bis(2-methyl benzimidazolyl)-benzene- 1,3-dicarboxamide [O-GBBA] have been synthesized and utilized to prepare Cu(II) complexes of general composition [Cu(GBBA)X ₂] · nH₂O and [Cu(O-GBBA)X₂] · n H₂O, where X is an exogenous anionic ligand (X = Cl⁻, NO₃⁻, SCN⁻). The oxidation of electron deficient olefins has been investigated using [Cu(O-GBBA)X₂] · nH₂O as catalyst and TBHP as an alternate source of oxygen. The respective ketonic products have been isolated and characterized by ¹H-NMR. The complex [Cu(GBBA)(NO₃)₂] · 4H₂O has been characterized structurally. It crystallizes in a monoclinic space group C2/c. Low temperature EPR spectra have been obtained for the complexes that shows g_II > g_I > 2.0024, indicating a tetragonal geometry in the solution state. The complexes display a quasi reversible redox wave due to the Cu(II)/Cu(I) reduction process. The E_1/2 values shift anodically as NO₃⁻ < SCN⁻ < Cl⁻.     

Synthesis,structural characterization,antimicrobial, DNA-binding,and photo-induced DNA cleavage activity of some bio-sensitive Schiff base copper(II) complexes

Schiff base mixed-ligand copper complexes [CuL¹(phen)Cl₂], [CuL¹(bipy)Cl₂], [Cu(L¹)₂Cl₂], [Cu(L²)₂Cl₂], [CuL²(bipy)Cl₂], and [CuL²(phen)Cl₂] (where L^1?=?4-[3,4-dimethoxy-benzylidene]-1,5-dimethyl-2-phenyl-1,2-dihydro-pyrazole-3-one; L^2?=?4-[3-hydroxy-4-nitro-benzylidene]-1,5-dimethyl-2-phenyl-1,2-dihydro-pyrazole-3-one; phen?=?1,10-phenanthroline; and bipy?=?2,2′-bipyridine) have been synthesized and characterized. Their DNA-binding properties have been studied by electronic absorption spectra, viscosity, and electrochemical measurements. The absorption spectral and viscosity results suggest that the copper(II) complexes bind to DNA via partial intercalation. The addition of DNA resulting in the decrease of the peak current of the copper(II) complexes indicates their interaction. Interaction between the complexes and DNA has also been investigated by submarine gel electrophoresis. The copper complexes cleave supercoiled pUC19 DNA to nicked and linear forms through hydroxyl radical and singlet oxygen in the presence of 3-mercaptopropionic acid as the reducing agent. These copper complexes promote the photocleavage of pUC19 DNA under irradiation at 360?nm. Mechanistic study reveals that singlet oxygen is likely to be the reactive species responsible for the cleavage of plasmid DNA by the synthesized complexes. The in vitro antimicrobial study indicates that the metal chelates have higher activity against the bacterial and fungal strains than the free ligands.     

全反式维甲酸合铜(II)配合物对DNA的切割和键合作用

以荧光法、粘度法、凝胶电泳和电化学方法研究了全反式维甲酸合铜(II)配合物与DNA的作用. 结果表明, 该配合物能在生理条件下有效切割质粒DNA, 加入H₂O₂后发现该配合物的切割活性增强, 说明该配合物对DNA的切割机理可能有两种: 氧化和水解. 同时可使DNA的粘度增加, 使EB-DNA体系的荧光强度降低. DNA的存在能导致该配合物氧化还原峰电流降低. 据此推断, 该配合物主要以嵌入方式与DNA作用.     

4-氯-2-(1H-咪唑并[4,5-f][1,10]菲咯啉)苯酚铜(Ⅱ)配合物的晶体结构及其与DNA的相互作用

利用菲咯啉酮衍生物4-氯-2-(1H-咪唑并[4,5-f][1,10]菲咯啉)苯酚(HL)设计合成了一种新的单核铜配合物[Cu(L)(5-Cl-sal)(DMF)]ClO_4·DMF(5-Cl-Hsal=5-氯-水杨醛),用元素分析和X射线单晶衍射等手段对配合物进行了表征。该配合物晶体属三斜晶系,P1空间群。用紫外吸收光谱、荧光光谱和凝胶电泳等方法研究了配合物与DNA的相互作用。结果表明,配合物以插入方式与CT-DNA结合,结合常数为1.02×10~3 L·mol~(-1)。同时配合物也能较大程度淬灭EB-DNA复合物的荧光,表观键合常数为4.37×10~5L·mol_(-1),略小于经典键合常数107 L·mol~(-1)。淬灭机理为动态淬灭。凝胶电泳实验研究表明配合物在H_2O_2存在下可将pBR322质粒DNA切割为开环缺口型DNA和线型DNA,配合物浓度越大,切割效果越好。机理研究显示,配合物切割DNA的反应是由羟基自由基(·OH)和单线态氧(~1O_2)作为活性物种的氧化切割过程。     

A copper(II) complex of the Schiff base from l-valine and 2-hydroxy-1-naphthalidene plus 1,10-phenanthroline: synthesis, crystal structure, and DNA interaction

A new Cu(II) complex, [Cu(naph-val)phen] (naph-val = Schiff base derived from 2-hydroxy-1-naphthaldehyde and l-valine, phen = 1,10-phenanthroline), has been synthesized and characterized by physicochemical methods. The crystal structure of the complex showed that there are four independent molecular structures in the crystallographic asymmetric unit, and each of them shows a distorted square-pyramidal CuN₃O₂ coordination geometry. In the crystal, the π − π stacking and intermolecular hydrogen bonds form a 2D network. The interactions between the Cu(II) complex and calf thymus DNA (CT-DNA) have been studied by spectroscopic methods, as well as viscosity and thermal denaturation measurements. The results indicate that the Cu(II) complex binds to CT-DNA in an intercalative mode. The cleavage reaction on pBR322 plasmid DNA has been investigated by agarose gel electrophoresis in the absence and presence of mercaptopropionic acid. The Cu(II) complex exhibits an efficient DNA cleavage activity.     

Synthesis,DNA-binding and photocleavage studies of cobalt(III) complexes [Co(bpy)<Subscript>2</Subscript>(dpta)]<Superscript>3+</Superscript> and [Co(bpy)<Subscript>2</Subscript>(amtp)]<Superscript>3+</Superscript>

Two novel cobalt(III) mixed-polypyridyl complexes [Co(bpy)₂(dpta)]³⁺ and [Co(bpy)₂(amtp)]³⁺ (bpy = 2,2′-bipyridine, dpta = dipyrido-[3,2-a;2′,3′-c]-thien-[3,4-c]azine, amtp = 3-amino-1,2,4-triazino[5,6-f]-1,10-phenanthroline) have been synthesized and characterized. The interaction of Co^III complexes with calf thymus DNA was investigated by spectroscopic and viscosity measurements. Results suggest that the two complexes bind to DNA via an intercalative mode. Moreover, Co^III complexes have been found to promote the photocleavage of plasmid DNA pBR322 under irradiation at 365 nm. The mechanism studies reveal that hydroxyl radical (OH^•) is likely to be the reactive species responsible for the cleavage of plasmid DNA by [Co(bpy)₂(dpta)]³⁺ and superoxide anion radical (O ₂ ^•− ) acts as the key role in the cleavage reaction of plasmid DNA by [Co(bpy)₂(amtp)]³⁺.     

Interaction of <Emphasis Type="Italic">E. coli</Emphasis> DNA with diazine-bridged late first row transition metal complexes derived from hexadentate compartmental ligands: an approach to DNA cleavage/binding studies

A series of binuclear Co^II, Ni^II, Cu^II and Zn^II complexes having μ-1,2 diazine bridging have been prepared and characterized by various physico-chemical methods. The hexadentate ligands were synthesized by condensing 3,5-dichloroformyl-1H-pyrazole with 2-hydrazinobenzothiazole (L¹H) or 4-aminoantipyrine (L²H) in 1:2 ratio. Gel electrophoresis data indicate cleavage of E. coli DNA to a minute extent by both [Co₂L²(μ-Cl)Cl₂(H₂O)₂]·H₂O and [Ni₂L²(μ-Cl)Cl₂(H₂O)₂]. Conversely, the data for the remaining complexes indicated binding but not cleavage. These results were confirmed by viscosity measurements and absorption spectral studies. An intercalative binding mode is predicted when the title complexes interact with DNA.     

Anion-π interactions—interactions between benzo-crown ether metal cation complexes and counter ions

The loss of X^· radical from [M + Cu + X]⁺ ions (copper reduction) has been studied by the so called in-source fragmentation at higher cone voltage (M = crown ether molecule, X⁻ = counter ion, ClO₄⁻, NO₃⁻, Cl⁻). The loss of X^· has been found to be affected by the presence/lack of aromatic ring poor/rich in electrons. Namely, the loss of X^· occurs with lower efficiency for the [NO₂-B15C5 + Cu + X]⁺ ions than for the [B15C5 + Cu + X]⁺ ions, where NO₂-B15C5 = 3-nitro-benzo-15-crown-5, B15C5 = benzo-15-crown-5. A reasonable explanation is that Anion-π interactions prevent the loss of X^· from the [NO₂-B15C5 + Cu + X]⁺ ions. The presence of the electron-withdrawing NO₂ group causes the aromatic ring to be poor in electrons and thus its enhances its interactions with anions. For the ion containing the aromatic ring enriched in electrons, namely [NH₂-B15C5 + Cu + ClO₄]⁺ where NH₂-B15C5 = 3-amino-benzo-15-crown-5, the opposite situation has been observed. Because of Anion-π repulsion the loss of X^· radical proceeds more readily for [NH₂-B15C5 + Cu + X]⁺ than for [B15C5 + Cu + X]⁺. Iron reduction has also been found to be affected by Anion-π interactions. Namely, the loss of CH₃O^· radical from the ion [B15C5 + Fe + NO₃ + CH₃O]⁺ proceeds more readily than from [NO₂⁻B15C5 + Fe + NO₃ + CH₃O]⁺.     

Synthesis,crystal structure,and DNA cleavage activity of a dinuclear nickel(II) complex with a macrocyclic ligand

A new Ni(II) complex, namely [Ni₂(OAc)L]·ClO₄·H₂O, was synthesized by [2 + 2] cyclo-condensation between 2,6-diformyl-4-methylphenol and N,N-bis(3-aminopropyl)-4-methoxybenzylamine (amba) in the presence of nickel(II) and characterized by spectroscopy, elemental analysis, and X-ray single crystal diffraction. The interactions of the complex with DNA have been measured by spectroscopy and viscosity measurements. Absorption spectroscopic investigation reveals intercalative binding of the Ni(II) complex with DNA, with a binding constant of 2.6 × 10⁴ M⁻¹. Fluorescence spectroscopy shows that the Ni(II) complex can displace ethidium bromide and bind to DNA, with a quenching constant of 7.57 × 10³ M⁻¹. The appearance of increased CD bands near 245 and 275 nm gives evidence for effective complex DNA binding. The agarose gel electrophoresis studies show that the complex displays effective DNA cleavage activity in the absence of any external agents.     

A novel porphyrin–polypyridyl ruthenium(II) hybrid. Synthesis, characterization and photoinduced DNA cleavage activity

A novel porphyrin–polypyridyl ruthenium(II) hybrid compound, [C₄-TPP-(ip)Ru(phen)₂](ClO₄)₂ (TPP = 5,10, 15,20-tetraphenylporphyrin, ip = imidazo[4,5-f][1,10]phenanthroline and phen = 1,10-Phenanthroline), in which a polypyridyl ruthenium(II) moiety is linked to a porphyrin moiety by a butyl chain, has been synthesized by the reaction of (C₄ip)TPP with cis-Ru(phen)₂Cl₂ in glacial acetic acid under an Ar atmosphere and characterized by elemental analysis, i.r., ¹H-n.m.r., u.v.–vis., ESI-MS and electrochemistry. Its photoinduced DNA cleavage activity was investigated preliminarily. It has been found that the hybrid compound promoted photocleavage of plasmid pBR 322 DNA upon irradiation. Singlet oxygen (¹O₂) is suggested to be the reactive species responsible for the cleavage.     

Kinetics and Mechanism of the Reactions of Picolinic Acid with Dichloro-{1-alkyl-2-(arylazo)imidazole}palladium(II) Complexes

The reaction between Pd(N,N′)Cl₂ [N,N′ ≡ 1-alkyl-2-(arylazo)imidazole (N,N′) and picolinic acid (picH) have been studied spectrophotometrically at λ = 463 nm in MeCN at 298 K. The product is [Pd(pic)₂] which has been verified by the synthesis of the pure compound from Na₂[PdCl₄] and picH. The kinetics of the nucleophilic substitution reaction have been studied under pseudo-first-order conditions. The reaction proceeds in a two-step-consecutive manner (A → B → C); each step follows first order kinetics with respect to each complex and picH where the rate equations are: Rate 1 = {k′₀ + k′₂[picH]₀} × [Pd(N,N′)Cl₂] and Rate 2 = {k′′₀ + k′′₂[picH]₀}[Pd(N,O)(monodentate N,N′)Cl₂] such that the first step second order rate constant (k′₂) is greater than the second step second order rate constant (k′′₂). External addition of Cl⁻ (as LiCl) suppresses the rate. Increase in π-acidity of the N,N′ ligand, increases the rate. The reaction has been studied at different temperatures and the activation parameters (Δ^‡H° and Δ^‡S°) were calculated from the Eyring plot.     

4-氯-2-(1H-咪唑并[4,5-f][1,10]菲咯啉)苯酚铜(Ⅱ)配合物的晶体结构及其与DNA的相互作用

利用菲咯啉酮衍生物4-氯-2-(1H-咪唑并[4,5-f][1,10]菲咯啉)苯酚(HL)设计合成了一种新的单核铜配合物[Cu (L)(5-Cl-sal)(DMF)]ClO₄·DMF (5-Cl-Hsal=5-氯-水杨醛),用元素分析和X射线单晶衍射等手段对配合物进行了表征。该配合物晶体属三斜晶系,P1空间群。用紫外吸收光谱、荧光光谱和凝胶电泳等方法研究了配合物与DNA的相互作用。结果表明,配合物以插入方式与CT-DNA结合,结合常数为1.02×10³ L·mol^-1。同时配合物也能较大程度淬灭EB-DNA复合物的荧光,表观键合常数为4.37×10⁵ L·mol^-1,略小于经典键合常数10⁷ L·mol^-1。淬灭机理为动态淬灭。凝胶电泳实验研究表明配合物在H₂O₂存在下可将pBR322质粒DNA切割为开环缺口型DNA和线型DNA,配合物浓度越大,切割效果越好。机理研究显示,配合物切割DNA的反应是由羟基自由基(·OH)和单线态氧(¹O₂)作为活性物种的氧化切割过程。     

DNA-binding properties of ruthenium(II) complexes with the bidentate ligand 5-chloro-2-(phenylazo)pyridine

A bidentate ligand, 5-chloro-2-(phenylazo)pyridine (Clazpy), and its two polypyridyl ruthenium(II) complexes, [Ru(Clazpy)₂bpy]Cl₂·7H₂O (1) and [Ru(Clazpy)₂phen]Cl₂·8H₂O (2), were synthesized and characterized. The DNA-binding properties of these complexes with DNA, the breast cancer susceptibility gene 1 (BRCA1), and the pBIND plasmid DNA were probed by photocleavage, electronic absorption titration, ethidium bromide quenching, and thermal denaturation. Both complexes were found to bind to the BRCA1 fragment through the intercalative mode into the base pairs of DNA, and the DNA-binding constants (K_b) for 1 and 2 were 7.0 × 10⁴ M⁻¹ and 5.1 × 10⁵ M⁻¹, respectively. In addition, both complexes enhanced the single-stranded cleavage of the plasmid DNA. Under comparable experimental conditions, 2 cleaved DNA more effectively than 1, in a dose–response manner. The data indicated that the binding affinity of these two complexes to DNA was dependent on the aromatic planarity and hydrophobicity of the intercalative polypyridyl ligand.     

Solid state kinetics of Cu(II) complex of [2-(1,2,3,4-thiatriazole-5-yliminomethyl)-phenol] from thermo gravimetric analysis

The ligand [2-(1,2,3,4-thiatriazole-5-yliminomethyl)-phenol] (L) is a schiff base derived from condensation reaction of 1,2,3,4-thiatriazole-5-ylamine and Salicylaldehyde. Synthesis of the ligand (L) and the complex [Cu(II)(L)₂]·2H₂O have been studied in our previous work (Bharti et al., Asian J Chem 23(2):773–776, 2011). Thermal decomposition behavior of synthesized Cu(II) complex has been investigated by thermo gravimetric (TG) analysis at heating rate of 10 °C min⁻¹ under nitrogen atmosphere. The mechanism of decomposition of Cu(II) complex has been established from TG data. Kinetic parameters such as order of reaction (n), activation energy (E _a), frequency factor (Z) and entropy of activation (∆S ^≠) were calculated by using Freeman and Carroll (J Phys Chem 62:394–397, 1958) as well as Doyle’s methods as modified by Zsako (J Phys Chem 72(7):2406–2411, 1968).     

Synthesis, structural characterization and thermal properties of three copper(II) complexes based on aryl hydrazide ligands

The thiosemicarbazide and hydrazide Cu(II) complexes, [Cu₃L₂¹(py)₄Cl₂] (1), [Cu(HL²)py] (2) and [Cu(HL³)py] (3), (H₂L¹ = 1-picolinoylthiosemicarbazide, H₃L² = N′-(2-hydroxybenzylidene)-3-hydroxy-2-naphthohydrazide, H₃L³ = 2-hydroxy-N′-((2-hydroxy-naphthalen-1-yl)methylene)benzohydrazide) have been prepared and characterized through physicochemical and spectroscopic methods as well as X-ray crystallography. Complex 1 has a centrosymmetric structure with –N–N– bridged Cu₃ skeleton. Neighboring molecules are linked into a 3D supermolecular framework by π–π stacking interactions, N–H···Cl and C–H···Cl hydrogen bonds. Complexes 2 and 3 have similar planar structures but different dimers formed by concomitant Cu···N and Cu···O interactions, respectively. Solvent accessible voids with a volume of 391 ?³ are included in the structure of complex 2, indicating that this complex is a potential host candidate. Thermogravimetric analysis shows that the three complexes are stable up to 100 °C.     

Metal complexes with girard reagents-based ligands

Complex formation reactions of copper(II) and zinc(II) halides with pyridoxilidene Girard-T hydrazone dihydrate [H₃PLGT]Cl₂·2H₂O and salicylidene Girard-T hydrazone [H₂SalGT]Cl ligands are described. The composition of the complexes, determined by customary methods, can be presented by the formulas Cu(HPLGT)X₂ (X=Cl^– and Br^– ), Zn(HPLGT)Cl₂, Cu(HSalGT)Cl₂·H₂O and Zn(SalGT)Cl·₂H₂O. The structures of the compounds were compared by powder X-ray diffraction. Thermal stability of the compounds has been examined by TG and DSC. The ligands and the complexes were tested against some gram-positive and gram-negative bacteria and yeast.     

Oxidative DNA cleavage by Cu(II) complexes of 1,10-phenanthroline-5,6-dione

A dimeric dichloro-bridged copper(II) complex [Cu₂(pdon)₂Cl₄] · 2DMF (1) and two mononuclear copper(II) complexes [Cu(pdon)(DMSO)Cl₂] · DMSO · H₂O (2) and [Cu(pdon)₃] · (ClO₄)₂ · 2.25CH₃CN · 6H₂O (3) (pdon = 1,10-phenanthroline-5,6-dione) have been synthesized and characterized. Variable-temperature magnetic susceptibility studies indicate the existence of weak anti-ferromagnetic coupling in the binuclear complex. The interaction of these complexes with CT-DNA (calf thymus DNA) has been studied using absorption and emission spectral methods. The apparent binding constants (K _app) for 1, 2 and 3 are 5.20 × 10⁵, 2.68 × 10⁵ and 7.05 × 10⁵ M^?1, respectively, showing moderate intercalative binding modes. All of these complexes cleave plasmid DNA to nicked DNA in a sequential manner as the concentration or reaction time is increased. The cleavage mechanism between the complex and plasmid DNA is likely to involve singlet oxygen ¹O₂ and ?OH as reactive oxygen species.     

Human serum albumin interaction studies of a new copper(II) complex containing ceftobiprole drug using molecular modeling and multispectroscopic methods

A copper(II) complex containing the ceftobiprole drug and 1,10-phenanthroline (phen) has been synthesized and characterized by UV–vis, FT-IR and mass spectra, and elemental analysis. The binding interaction between [Cu(cef)(phen)Cl₂] complex and human serum albumin (HSA) was investigated using absorption, fluorescence emission and circular dichroism spectroscopies, and molecular docking. Thermodynamic parameters (ΔH < 0 and ΔS < 0) indicated that the hydrogen bond and van der Waals interactions played main roles in the binding of complex [Cu(cef)(phen)Cl₂] to HSA. The results of CD and UV–vis spectroscopy showed that the binding of [Cu(cef)(phen)Cl₂] to HSA induces some conformational changes in HSA. Displacement experiments predicted that the binding of [Cu(cef)(phen)Cl₂] complex to HSA is located within domain III, Sudlow’s site 2, and these observations were substantiated by molecular docking studies.     

A ternary copper(II) complex for supramolecular assembly with double helices: synthesis,crystal structure,DNA-binding and DNA-cleavage properties

A ternary Cu(II) complex, [Cu(naph-ser)(bipy)]·0.125CH₂Cl₂ (naph-ser = a Schiff base derived from 2-hydroxy-1-naphthaldehyde and l-serine, bipy = 2, 2′-bipyridine), has been synthesized and structurally characterized. In the crystal structure, a supramolecular assembly with left-handed double helices is formed by O–H···O hydrogen bonding interactions. The DNA-binding properties and DNA-cleavage activity of the Cu(II) complex have been investigated by spectroscopic methods and agarose gel electrophoresis. The results indicate that the Cu(II) complex can bind to CT-DNA via an intercalative mode and shows efficient cleavage activity in the absence and presence of reducer.