Designed self-assembly of molecular necklaces

This paper reports an efficient strategy to synthesize molecular necklaces, in which a number of small rings are threaded onto a large ring, utilizing the principles of self-assembly and coordination chemistry. Our strategy involves (1) threading a molecular "bead" with a short "string" to make a pseudorotaxane and then (2) linking the pseudorotaxanes with a metal complex with two cis labile ligands acting as an "angle connector" to form a cyclic product (molecular necklace). A 4- or 3-pyridylmethyl group is attached to each end of 1,4-diaminobutane or 1,5-diaminopentane to produce the short "strings" (C4N4(2+), C4N3(2+), C5N4(2+), and C5N3(2+)), which then react with a cucurbituril (CB) "bead" to form stable pseudorotaxanes (PR44(2+), PR43(2+), PR54(2+), and PR53(2+), respectively). The reaction of the pseudorotaxanes with Pt(en)(NO(3))(2) (en = ethylenediamine) produces a molecular necklace [4]MN, in which three molecular "beads" are threaded on a triangular framework, and/or a molecular necklace [5]MN, in which four molecular "beads" are threaded on a square framework. Under refluxing conditions, the reaction with PR44(2+) or PR54(2+) yields exclusively [4]MN (MN44T or MN54T, respectively), whereas that with PR43(2+) or PR53(2+) produces exclusively [5]MN (MN43S or MN53S, respectively). The products have been characterized by various methods including X-ray crystallography. At lower temperatures, on the other hand, the reaction with PR44(2+) or PR54(2+) affords both [4]MN and [5]MN. The supermolecules reported here are the first series of molecular necklaces obtained as thermodynamic products. The overall structures of the molecular necklaces are strongly influenced by the structures of pseudorotaxane building blocks, which is discussed in detail on the basis of the X-ray crystal structures. The temperature dependence of the product distribution observed in this self-assembly process is also discussed.     

Combinatorics of reaction-network posets

Reaction networks are viewed as derived from ordinary molecular structures related in reactant-product pairs so as to manifest a chemical super-structure. Such super-structures then are candidates for applications in a general combinatoric chemistry. Notable additional characterization of a reaction super-structure occurs when such reaction graphs are directed, as for example when there is progressive substitution (or addition) on a fixed molecular skeleton. Such a set of partially ordered entities is in mathematics termed a poset, which further manifests a number of special properties, as then might be utilized in different applications. Focus on the overall "super-structural" poset goes beyond ordinary molecular structure in attending to how a structure fits into a (reaction) network, and thereby brings an extra "dimension" to conventional stereochemical theory. The possibility that different molecular properties vary smoothly along chains of interconnections in such a super-structure is a natural assumption for a novel approach to molecular property and bioactivity correlations. Different manners to interpolate/extrapolate on a poset network yield quantitative super-structure/activity relationships (QSSARs), with some numerical fits, e.g., for properties of polychlorinated biphenyls (PCBs) seemingly being quite reasonable. There seems to be promise for combinatoric posetic ideas.     

氮、氮双中心三电子键的分子力学力参数研究

1，n－氮、氮双环烷烃（n＝4－6）第一电离能很低（＜7eV）[1]．动力学和光谱学研究表明，当电离（氧化）后形成的阳离子游离基（I）是中间体，且其中某些分子存在三电子σ键[2]．成键轨道σ（N，N）有两个电子，反键轨道有一个电子（如），这些中间体的寿命短则几毫秒、几秒，长到几小时甚至几个月，存在干晶体或对质子有惰性的溶剂中．有人［1，3］还推测出该三电子σ键键能约本文尝试用分子力学uuz方法对阳离子游离基（！）进行计算，采用nontoger方法问得到了一些力场参数、用这些力场参数，选择文献已作报导的1，5一氮、氮双环（3，3…     

Self-organisation in the assembly of gels from mixtures of different dendritic peptide building blocks

This paper investigates dendritic peptides capable of assembling into nanostructured gels, and explores the effect on self-assembly of mixing different molecular building blocks. Thermal measurements, small angle X-ray scattering (SAXS) and circular dichroism (CD) spectroscopy are used to probe these materials on macroscopic, nanoscopic and molecular length scales. The results from these investigations demonstrate that in this case, systems with different "size" and "chirality" factors can self-organise, whilst systems with different "shape" factors cannot. The "size" and "chirality" factors are directly connected with the molecular information programmed into the dendritic peptides, whilst the shape factor depends on the group linking these peptides together--this is consistent with molecular recognition hydrogen bond pathways between the peptidic building blocks controlling the ability of these systems to self-recognise. These results demonstrate that mixtures of relatively complex peptides, with only subtle differences on the molecular scale, can self-organise into nanoscale structures, an important step in the spontaneous assembly of ordered systems from complex mixtures.     

Crystallizable Polyphenylacetylene-Preparation and Solution Properties

The molecular weight distribution (MWD) of crystallizable polyphenylacetylene prepared near room temperature in the presence of ferric acetylacetonate and triethylaluminum was determined through use of fractions characterized by vapor pressure osmometry and gel permeation chromatography (GPC). The number- and weight-average molecular weights (M _n and M _w) are both less than the molecular weight corresponding to the maximum of the weight distribution function, which lacks a high molecular weight tail. M _wandM _n is less than is consistent with models allowing for chain termination characteristic of vinyl polymers. GPC elution volumes are much less than those characteristic of polystyrene of similar molecular weight, and the Mark-Houwink exponent is high (2.4 for M _v 4800 to 6800). These data indicate more rodlike behavior than for polystyrene of equivalent molecular weight. The MWD and other data suggest intramolecular chain termination, possibly associated with the molecule's tendency to form paramagnetic defect states.     

Electronic structures of single-walled carbon nanotubes encapsulating ellipsoidal C70

The molecular orientation of ellipsoidal C(70) in single-walled carbon nanotubes (SWCNTs) depends on the tube diameter (d(t)). Photoluminescence (PL) studies reveal that the fullerene encapsulation effects on the optical transition energy of SWCNTs are significantly different for C(70) and C(60) at d(t) = 1.405-1.431 nm. This indicates that the transition from the "lying" alignment to the "standing" alignment occurs at d(t) ≈ 1.41 nm and the electronic states of SWCNTs are very sensitive to the interspacing between the encapsulated molecules and the SWCNTs. The present findings suggest that the electronic structure of SWCNTs is tunable not only by alternating the encapsulated molecules but also by controlling their molecular orientations, thus paving the way for development of novel SWCNT-based devices.     

Reactions between or within molecular crystals

Reactions that occur within or between molecular crystals, in particular those reactions that are activated by mechanical methods, are reviewed. The focus is on processes (whether intrasolid or intersolid) that are controlled primarily by supramolecular bonding, such as template cycloadditions, formation of inclusion compounds, reactions between molecular crystals by the reassembling of noncovalent bonds, and the formation of complexes and coordination compounds. It is proposed that solvent-free mechanochemical methods, for example, cogrinding, milling, and kneading, represent viable "green" routes for the preparation of novel molecular and supramolecular solids.     

Low Viscosity Poly(trimethylene carbonate) for Localized Drug Delivery: Rheological Properties and in vivo Degradation

The purpose of this study is to examine the potential of low‐molecular‐weight poly(trimethylene carbonate) for localized delivery for acid‐sensitive drugs. Poly(trimethylene carbonate) of various molecular weights is prepared by ring‐opening polymerization initiated by octan‐1‐ol and co‐initiated/catalyzed by tin 2‐ethylhexanoate. The resultant polymers are amorphous with low glass transition temperatures and viscosities at 37 °C that permit their injection through an G 1.5″ needle. Their biocompatibility and the influence of the molecular weight on the rate of degradation are assessed in vivo through subcutaneous implantation in rats over 40 weeks. The polymers are well tolerated in vivo, and degrade in a fashion dependent on their initial molecular weight. For very low initial molecular weight (620 Da) and for high initial molecular weight (2 400 Da), polymer mass loss is a result of dissolution of the soluble low molecular chains from the bulk. This is contrasted by the results obtained for an intermediate initial molecular weight (1 600 Da), for which polymer mass loss is a result of both dissolution and enzymatic hydrolysis or oxidation as a result of reactive species secreted by activated macrophages at the implant surface.

     

How Has the Bridge Fragment Chosen to Design Charge Transfer Molecular Device?

Applying the time-dependent density functional theory (TD-DFT) method the design of molecular logical functions from the dithieno[3,2-b:2,3-d]thiophene (thiophene) and azo-dye Disperse Orange 3 (DO3) molecules joined with various electron-insulator bridges is performed. Based on the results of the investigations, the main design rules for the selection of the bridge fragment between a photo-acceptor and photo-donor of a charge transfer molecular device are proposed.     

光诱导钌配合物的几何异构和结构异构反应研究进展

金属钌(Ru)的配合物具有丰富的基态和激发态的光物理、光化学性质,在太阳能转换、光催化以及分子识别等方面都得到了广泛深入的研究.光诱导的钌配合物的异构反应是其颇具特色的一类光反应,研究光异构反应对于光能量转化、信息储存以及"分子光开关"和"分子马达"的设计具有重要的意义.本文小结和综述了钌配合物的光诱导几何异构和结构异构反应的特性和机理以及最新的研究进展.     

Hybrid molecular nanostructures with donor-acceptor chains

We have fabricated hybrid molecular chain structures formed by electron acceptor compound 1 and electron donor molecules 2 and 3 at the liquid/solid interface of graphite surface.The structural details of the mono-component and the binary assemblies are revealed by high resolution scanning tunneling microscopy (STM).Compound 1 can form two well-ordered lamellar patterns at different concentrations.In the co-adsorption structures,compounds 2 and 3 can insert into the space between molecular chains of compound 1 and form large area well-ordered nanoscale phase separated lamellar structures.The unit cell parameters for the coassemblies can be "flexibly" adjusted to make the electron donors and acceptors perfectly match along the molecular chains.Scanning tunneling spectroscopy (STS) results indicate that the electronic properties of individual molecular donors and acceptors are preserved in the binary self-assembly.These results provide molecular insight into the nanoscale phase separation of organic electron acceptors and donors on surfaces and are helpful for the fabrication of surface supramolecular structures and molecular devices.     

Theoretical study of nonlinear optical properties of cobalt bis (dicarbollide) derivatives: the effect of substituents

In the present work, molecular first-order hyperpolarizability (\(\beta _{\mathrm{tot}}\)) and dipole moment (d) are obtained at B3LYP/6–31G(d,p) level of theory by coupled perturbed Hartree–Fock method within the static approach. The investigated molecules are a series of substituted cobalt bis (dicarbollide) derivatives: Hydrogens bonded to the two carbon atoms are replaced by acceptor and donor electron substituents. Correlations between the Hammett electronic parameters of the substituents and the molecular properties are tested. Among them, the named push–pull compounds produced the largest calculated values of \(\beta _{\mathrm{tot}}\) and d. The UV–Vis spectra are reported for all studied compounds.     

A new approach to analysis and display of local lipophilicity/hydrophilicity mapped on molecular surfaces

Summary A new method for display and analysis of lipophilic/hydrophilic properties on molecular surfaces is presented. The present approach is based on the concept of Crippen and coworkers that the overall hydrophobicity of a molecule (measured as the logarithm of the partition coefficient in an octanol/water system) can be obtained as a superposition of single atom contributions. It is also based on the concept of molecular lipophilicity potentials (MLP) first introduced by Audry and coworkers in order to establish a 3D lipophilicity potential profile in the molecular environment. Instead of using a l/r- or an exponential distance law between the atomic coordinates and a point on the molecular surface, a new distance dependency is introduced for the calculation of an MLP-value on the solvent-accessible surface of the molecule. In the present formalism the Crippen values (introduced for atoms in their characteristic structural environment) are projected onto the van der Waals surface of the molecule by a special weighting procedure. This guarantees that only those atomic fragments contribute significantly to the surface values that are in the close neighbourhood of the surface point. This procedure not only works for small molecules but also allows the characterization of the surfaces of biological macromolecules by means of local lipophilicity. Lipophilic and hydrophilic domains can be recognized by visual inspection of computer-generated images or by computational procedures using fuzzy logic strategies. Local hydrophobicities on different molecular surfaces can be quantitatively compared on the basis of the present approach.     

基于化学的新工科专业——“智慧分子工程”专业建设思路及建议

According to the construction concept of the "emerging engineering education", ideas and the connotations for constructing "intelligent molecular engineering" are introduced. The necessities of setting up of "intelligent molecular engineering" are discussed and the cultivation demand of professional talents is analyzed. The construction draft of "intelligent molecular engineering" is also expounded, including the cultivation targets and requirements of graduation, the teaching content of curriculum system, teaching staff and teaching conditions. All the statements are significant for guiding the design and construction of "intelligent molecular engineering".     

Molecular length, monolayer density, and charge transport: lessons from Al-AlOx/alkyl-phosphonate/Hg junctions

A combined electronic transport-structure characterization of self-assembled monolayers (MLs) of alkyl-phosphonate (AP) chains on Al-AlOx substrates indicates a strong molecular structural effect on charge transport. On the basis of X-ray reflectivity, XPS, and FTIR data, we conclude that "long" APs (C14 and C16) form much denser MLs than do "short" APs (C8, C10, C12). While current through all junctions showed a tunneling-like exponential length-attenuation, junctions with sparsely packed "short" AP MLs attenuate the current relatively more efficiently than those with densely packed, "long" ones. Furthermore, "long" AP ML junctions showed strong bias variation of the length decay coefficient, β, while for "short" AP ML junctions β is nearly independent of bias. Therefore, even for these simple molecular systems made up of what are considered to be inert molecules, the tunneling distance cannot be varied independently of other electrical properties, as is commonly assumed.     

π-SCF-Molecular Mechanics PIMM: Formulation,parameters, applications

Summary A -SCF/Molecular Mechanics method (PIMM) for the calculation of heats of formation, molecular geometries and charge density distributions of organic molecules is described. The method combines a -SCF molecular orbital calculation and the -charge evaluation procedure PEOE of Marsilli and Gasteiger with molecular mechanics. The formulas and parameters use are given. A series of results for small molecules is presented and compared with experimental data.