Molecular structure and vibrational assignment of melaminium phthalate by density functional theory (DFT) and ab initio Hartree-Fock (HF) calculations

The molecular geometry, the normal mode frequencies and corresponding vibrational assignment of melaminium phthalate (C₃H₇N₆⁺·C₈H₅O₄⁻) in the ground state were performed by HF and B3LYP levels of theory using the 6-31G(d) basis set. The optimized bond length numbers with bond angles are in good agreement with the X-ray data. The vibrational spectra of melaminium phthalate which is calculated by HF and B3LYP methods, reproduces vibrational wave numbers with an accuracy which allows reliable vibrational assignments. The title compound has been studied in the 4000–100 cm⁻¹ region where the theoretical evaluation and assignment of all observed bands were made.     

Far infrared spectra, conformational equilibria, vibrational assignments, ab initio calculations and structural parameters for 2-bromoethanol

The far infrared spectrum from 370 to 50 cm⁻¹ of gaseous 2-bromoethanol, BrCH₂CH₂OH, was recorded at a resolution of 0.10 cm⁻¹. The fundamental O–H torsion of the more stable gauche (Gg′) conformer, where the capital G refers to internal rotation around the C–C bond and the lower case g to the internal rotation around the C–O bond, was observed as a series of Q-branch transitions beginning at 340 cm⁻¹. The corresponding O–H torsional modes were observed for two of the other high energy conformers, Tg (285 cm⁻¹) and Tt (234 cm⁻¹). The heavy atom asymmetric torsion (rotation around C–C bond) for the Gg′ conformer has been observed at 140 cm⁻¹. Variable temperature (−63 to −100°C) studies of the infrared spectra (4000–400 cm⁻¹) of the sample dissolved in liquid xenon have been recorded. From these data the enthalpy differences have been determined to be 411±40 cm⁻¹ (4.92±0.48 kJ/mol) for the Gg′/Tt and 315±40 cm⁻¹ (3.76±0.48 kJ/mol) for the Gg′/Tg, with the Gg′ conformer the most stable form. Additionally, the infrared spectrum of the gas, and Raman spectrum of the liquid phase are reported. The structural parameters, conformational stabilities, barriers to internal rotation and fundamental frequencies have been obtained from ab initio calculations utilizing different basis sets at the restricted Hartree–Fock or with full electron correlation by the perturbation method to second order. The theoretical results are compared to the experimental results when appropriate. Combining the ab initio calculations with the microwave rotational constants, r₀ adjusted parameters have been obtained for the three 2-haloethanols (F, Cl and Br) for the Gg′ conformers.     

An experimental and theoretical study of molecular structure and vibrational spectra of 2-chloronicotinic acid by density functional theory and ab initio Hartree–Fock calculations

In this work, the Fourier transform Raman and Fourier transform infrared spectra of 2-chloronicotinic acid (2-CNA) are recorded in the solid phase. The molecular geometry, vibrational frequencies, infrared intensities and Raman scattering activities of 2-CNA in ground state have been calculated by using ab initio Hartree–Fock (HF) and density functional (B3LYP and B3PW91) methods with 6-31G(d) and 6-311G(d) basis sets level. On the basis of the comparison between calculated and experimental results and the comparison with related molecule, assignments of fundamental vibrational modes are examined. The optimized geometric parameters (bond lengths and bond angles) obtained by using HF show the best agreement with the experimental values of 2-CNA. Comparison of the observed fundamental vibrational frequencies of 2-CNA and calculated results by density functional (B3LYP and B3PW91) and Hartree–Fock methods indicates that B3LYP is superior to the scaled Hartree–Fock and B3PW91 approach for molecular vibrational problems.     

Molecular structure, IR spectra of 2-mercaptobenzothiazole and 2-mercaptobenzoxazole by density functional theory and ab initio Hartree–Fock calculations

Quantum chemistry calculations have been performed using Gaussian03 program to compute optimized geometry, harmonic vibrational frequency along with intensities in IR and Raman spectra and atomic charges at RHF/6-31+G*, B3LYP/6-31+G* and B3LYP/6-31++G* levels for 2-mercaptobenzothiazole (MBT, C₇H₅NS₂) and 2-mercaptobenzoxazole (MBO, C₇H₅NOS) in the ground state. The scaled harmonic vibrational frequencies have been compared with experimental FT-IR and FT-Raman spectra. The results show that the scaled theoretical vibrational frequencies is very good agreement with the experimental values. A detailed interpretation of the infrared and Raman spectra of 2-mercaptobenzothiazole and 2-mercaptobenzoxazole was reported. Comparison of calculated spectra with the experimental spectra provides important information about the ability of the computational method to describe the vibrational modes.     

Experimental (FTIR and FT-Raman) and ab initio and DFT study of vibrational frequencies of 5-amino-2-nitrobenzoic acid

The FTIR and FT-Raman spectra of 5-amino-2-nitrobenzoic acid (ANB) have been recorded in the region 400-4000cm(-1). The observed frequencies were assigned to different modes of vibrations on the basis of fundamental, combination and overtones. The geometry has been optimized with complete relaxation on the potential energy surface at HF, MP2 and B3LYP level of theories using 6-311++G(d,p) basis set and compared with the crystal data. The possible hydrogen bond interaction has been estimated taking a model compound. Further harmonic vibrational frequency calculations have been carried out at HF and B3LYP levels and the scaled values were in good agreement with majority of the experimental observations. The theoretically constructed spectra coincide satisfactorily with those of experimental spectra.     

The infrared and Raman spectra, ab initio calculations and spectral assignments of cyclopropylmethyl dichlorosilane (c-C3H5)SiCl2CH3

Raman spectra of cyclopropylmethyl dichlorosilane (c-C₃H₅)SiCl₂CH₃ as a liquid were recorded at 293 K and polarization data were obtained. Additional Raman spectra were recorded at various temperatures between 293 and 163 K, and intensity changes of certain bands with temperature were detected. No crystallization was ever obtained in the Raman cryostat in spite of extensive annealing. The infrared spectra have been studied as a vapour, as an amorphous solid at 78 K and as a liquid in the range 600-100 cm⁻¹. No infrared bands present in the vapour or liquid seemed to vanish upon cooling, and the sample never formed crystals on the CsI window of an infrared cryostat.The compound exists a priori in two conformers, syn and gauche, and the experimental results suggest an equilibrium in which the gauche conformer has 1.64 kJ mol⁻¹ lower enthalpy than syn in the liquid, leading to 20% syn at ambient temperature. Most of the syn bands were situated close to the corresponding gauche bands and it was difficult to obtain reliable ΔH values.B3LYP calculations with various basis sets and the CBS-QB3 and G2 and G3 models were employed, yielding the conformational enthalpy difference ΔH (syn-gauche) between 2.6 and 3.4 kJ mol⁻¹. Infrared and Raman intensities, polarization ratios and vibrational frequencies for the syn and gauche conformers were calculated. Instead of scaling the calculated wavenumbers in the harmonic approximation, calculations from B3LYP/cc-pVTZ were derived in the anharmonic approximation. In most cases these values were in good agreement with the experimental results for 38 observed modes of the gauche and 8 modes of the syn conformer with a deviation of ca. 1%.     

Determination of vibrational parameters of methanol from matrix-isolation infrared spectroscopy and ab initio calculations. Part 2 – Theoretical treatment including a perturbative approach of the resonances within the methyl group

Ab initio calculations of the potential energy surface of methanol have been developed for the determination of vibrational parameters and their comparison with vibrational data reported in the first part of this work. The strong resonances between the methyl bending and stretching modes, giving rise to polyads of levels P_n in the ranges 3000–2800 (P₂), 4500–4250 (P₃) and 6000–5600 cm⁻¹ (P₄), have been treated by solving for each polyad two Hamiltonian matrices containing off-diagonal terms including both Fermi and Darling-Dennison anharmonic contributions. These terms were calculated from the ab initio determination of the potential energy surface developed up to the quartic terms using the Möller–Plesset 2 method. The choice of the basis set was made to minimize the problem of divergence of the Darling-Dennison constants. Their determination requires however the omission of the terms in which the difference between the harmonic frequencies of the symmetrical methyl stretching and the sum of the two A′ bendings (ω₃–ω₄–ω₅) appears in the denominator. Then, by adjustment of the diagonal elements of the Hamiltonian matrices, it becomes possible to propose a realistic assignment of the matrix spectra.     

Hydrogen bonding and dimeric self-association of 2-pyrrolidinone: An ab initio study

Ab initio calculations on the different associated structures of 2-pyrrolidinone with water and with itself were carried out using 3-21G and 6-31G^* basis sets at the Hartree–Fock level, including electron correlation using second-order Møller–Plesset perturbation theory. The calculated free energy changes for the intermolecular hydrogen bonded dimer and hydrated species indicated that the molecular systems with cyclic dimerization and association with two water molecules are dominant. The results are compared to the available experimental data in the literature.     

Structure of the complex of dimethylphenyl betaine with dichloroacetic acid studied by X-ray diffraction,DFT calculations,infrared and Raman spectra

The structure of the complex of dimethylphenyl betaine (DMPB) with dichloroacetic acid (DCA) (1) has been investigated by X-ray diffraction, FTIR and Raman spectroscopy, and B3LYP/6-311 + + G(d,p) calculations. The crystal is monoclinic, space group P2₁. The acid is connected with betaine through the OH⋯O hydrogen bond of 2.480(2) Å. In the optimized structure the short, asymmetric O⋯O distance is 2.491 Å. FTIR spectrum shows a broad absorption in the 1500–400 cm⁻¹ region characteristic of very short OH⋯O hydrogen bond caused by Fermi resonance between νOH and overtones of δOH and γOH. In the Raman spectrum this broad absorption is not observed. The potential energy distributions (PED) were used for the assignments of IR and Raman frequencies in the experimental and calculated spectra. The FTIR and Raman spectra of the crystal complex are consistent with the X-ray results.     

Synthesis of two new thioesters bearing ferrocene: Vibrational characterization and ab initio calculations. X-ray crystal structure of S-(2-methoxyphenyl)ferrocenecarbothioate

Structural and conformational properties of S-benzyl ferrocenecarbothioate (I) and S-(2-methoxyphenyl) ferrocenecarbothioate (II) are analyzed using data obtained from X-ray diffraction, vibrational data and theoretical calculations. According to chemical quantum calculations, the synperiplanar and antiperiplanar forms are found as the first and second more stable conformations, respectively, for the title compounds. The geometric parameters and normal modes of vibration were calculated using a density functional theory method (B3LYP) and the 6-31+G∗∗ basis set for all atoms except for iron. For this atom the calculations were carried out with the Lanl2dz basis set. The calculated parameters are in good agreement with the corresponding X-ray diffraction values. The combined experimental and theoretical approach allows a consistent assignment for most of the fundamental modes.     

Assignment of the vibrational spectra of 2(1H)-pyridinone (2-pyridone) in the solid state,and in solution as centrosymmetrical dimer. Comparison with 1-methyl-2(1H)-pyridinone (N-methyl-2-pyridone)

The complete assignment of the vibrational spectra of 2(1H)-pyridinone (2-pyridone), 1-D-2(1H)-pyridinone (2-pyridone ND) and 1-methyl-2(1H)-pyridinone (N-methyl-2-pyridone) is obtained from a comparative analysis of their IR and Raman spectra (condensed phase and molar solutions in CHCl₃ or CDCl₃). For the 2-pyridone centrosymmetrical dimer, the strength of the NH…O hydrogen bond association is discussed. Comparison is made with the recent work of Medhi and of Nowak et al.     

A theoretical ab initio study on the H(2)NO + O(3) reaction

The deviation of the NH(2) pseudo-first-order decay Arrhenius plots of the NH(2) + O(3) reaction at high ozone pressures measured by experimentalists, has been attributed to the regeneration of NH(2) radicals due to the subsequent reactions of the products of this reaction with ozone. Although these products have not yet been characterized experimentally, the radical H(2)NO has been postulated, because it can regenerate NH(2) radicals through the reactions: H(2)NO + O(3) --> NH(2) + O(2) and H(2)NO + O(3) --> HNO + OH + O(2). With the purpose of providing a reasonable explanation from a theoretical point of view to the kinetic observed behaviour of the NH(2) + O(3) system, we have carried ab initio electronic structure calculations on both H(2)NO + O(3) possible reactions. The results obtained in this article, however, predict that of both reactions proposed, only the H(2)NO + O(3) --> NH(2) + O(2) reaction would regenerate indeed NH(2) radicals, explaining thus the deviation of the NH(2) pseudo-first-order decay observed experimentally.     

Self- and heteroassociates of cumyl hydroperoxide: FTIR-spectroscopy, chemometrics (factor analysis) and quantum chemical calculations

Self- and heteroassociation of cumyl hydroperoxide and acetophenone in n-decane solutions were studied by FTIR spectroscopy (3100–3700 cm⁻¹, 298–358 K). To interpret spectroscopic data, the new approach of factor analysis was offered. Equilibrium constants and thermodynamic parameters of associate formation were determined. The DFT calculations of cumyl hydroperoxide conformations, their self- and heteroassociates were carried out.     

Bonding and Acidity of the Formal Hydride in the Prototypical Au9(PPh3)8H2+ Nanocluster

The role of hydrogen atoms as surface ligands on metal nanoclusters is of profound importance but remains difficult to directly study. While hydrogen atoms often appear to be incorporated formally as hydrides, evidence suggests that they donate electrons to the cluster's delocalized superatomic orbitals and may consequently behave as acidic protons that play key roles in synthetic or catalytic mechanisms. Here we directly test this assertion for the prototypical Au₉(PPh₃)₈H²⁺ nanocluster, formed by addition of a hydride to the well-characterized Au₉(PPh₃)₈³⁺. Using gas-phase infrared spectroscopy, we were able to unambiguously isolate Au₉(PPh₃)₈H²⁺ and Au₉(PPh₃)₈D²⁺, revealing an Au−H stretching mode at 1528 cm⁻¹ that shifts to 1038 cm⁻¹ upon deuteration. This shift is greater than the maximum expected for a typical harmonic potential, suggesting a potential governing cluster-H bonding that has some square-well character consistent with the hydrogen nucleus behaving as a metal atom in the cluster core. Complexing this cluster with very weak bases reveals a redshift of 37 cm⁻¹ in the Au−H vibration, consistent with those typically seen for moderately acidic groups in gas phase molecules and providing an estimate of the acidity of Au₉(PPh₃)₈H²⁺, at least with regard to its surface reactivity.     

Gas phase and water solution conformational analysis of the herbicide diuron (DCMU): an ab initio study

In the present work, the conformational equilibrium for the herbicide diuron (DCMU) has been investigated using high level ab initio calculations. The solvent effect was included through two different continuum models: (1) the real cavity IPCM method and (2) the standard dipole Onsager model SCRF. The effect due to solute-solvent hydrogen-bond interactions was analyzed considering a hybrid discreet-continuum model. At the Hartree-Fock level, the gas phase results showed that only the trans forms (A and B) are present in the equilibrium mixture, with the relative concentrations found to be 33% (A) and 67% (B) (HF/6-311+G**//6-31G**). When the electronic correlation effect is included (MP2/6-31G*//HF/6-31G*), a relative stabilization of the cis forms was observed, with the conformational distribution calculated as 38% (A), 50% (B), 6% (C) and 6% (D). The trans conformations were found to be completely planar, which has been considered to be a prerequisite for the herbicide binding. In water solution, the trans conformation A should be the most abundant conformer, the IPCM and SCRF values being ca. 100% and ca. 85% respectively. The IPCM calculations with the isodensity level set to 0.0005 present a conformational distribution close to that obtained from the hybrid model [92% (A) and 8% (B)], which has been considered our best solvent approach. Regarding the biological action of urea-type herbicides, the results presented here are important, because some QSAR studies have suggested that the partition coefficient is related to the herbicide activity, so the conformational equilibrium may play a role in the biological action. Received: 23 February 1998 / Accepted: 28 May 1998 / Published online: 19 August 1998     

Combining ab initio calculations and Fourier-transform infrared (FT-IR) spectroscopy for quantitative analysis of multicomponent systems in solution: Tautomer proportions of ethyl acetoacetate

A quantitative analysis method, combined experimental–computational approach (CECA), has been developed and applied for the detection of tautomer ratios of ethyl acetoacetate (eaa) in three organic solvents (acetonitrile, methanol, and chloroform). In order to obtain the relative concentrations of tautomers of eaa, IR intensities of both tautomers have been calculated at three different calculation levels (B3LYP/6-311++G(2d,2p), MP2/cc-pVDZ, and MP2/cc-pVTZ), augmented by the data obtained using basis set extrapolation technique. Experimental absorption bands were recorded at specific wavenumbers with FT-IR spectrophotometer and combined with calculated IR intensities in Lambert–Beer equation. Though the pure computational approach does not provide accurate values of the tautomers’ ratio, yet the results obtained using the CECA method are very close to the experimental data.     

Structure and spectra of 1,3-dioxanes. II. Microwave spectrum, structural parameters, and ab initio calculations of 2-methyl-1,3-dioxane

The microwave spectra of five isotopomers with the ¹³C and ¹⁸O natural abundance isotopes of the 2-methyl-1,3-dioxane molecule (22–50 GHz) were studied. Rotational transitions of a and c types with 4 ≤ J ≤ 12 were identified. The rotational constants and the substitution r _s and effective r _o structural parameters of the molecule were determined. Ab initio calculations on 2-methyl-1,3-dioxane were performed with molecular structure optimization. The results of quantum-chemical calculations at different levels are compared with experimental data.     

Spectroscopic studies of the 1:1 complex of piperidine-4-carboxylic acid (isonipecotic acid) with 2,6-dichloro-4-nitrophenol

The 1:1 complex of piperidine-4-carboxylic acid (isonipecotic acid, P4C) with 2,6-dichloro-4-nitrophenol (DCNP), has been investigated by single-crystal X-ray analysis, Raman and FTIR spectroscopy and theoretical calculations. The hydrogen-bonded-ion-pair complex is observed in the crystalline state with the O⋯H⋯OOC hydrogen bond of 2.453(16) Å. FTIR spectrum shows a broad absorption in the 1600–400 cm⁻¹ region characteristic of very short OHO hydrogen bond, broken by the Evans holes. The complexes are joined through NH⋯O into a H-bonding network. The NH⋯O mode appears as a broad band in the range of 3100–2000 cm⁻¹. In the structure optimized at the B3LYP/6–311 + +G(d,p) level of theory the proton is transferred from DCNP to P4C, and molecules are joined through the O⋯HOOC hydrogen bond of 2.640 Å. The experimental and theoretical infrared spectra are discussed. Detail interpretation of the vibrational spectra has been carried out with the use of computed Potential Energy Distribution (PED).     

Structural and vibrational study on N-(biphenyl-2-thiocarbamoyl)-4-phenylcarboxamide

A new thiourea derivative, N-(biphenyl-2-thiocarbamoyl)-4-phenylcarboxamide, is synthesized and characterized by elemental analysis, FTIR, NMR and the single crystal X-ray diffraction study. The title compound crystallizes with two molecules in the asymmetric unit. The dihedral angle between the two aromatic rings in the biphenyl unit is 47.9(2) and 56.52(19)°, respectively, for the two molecules in the asymmetric unit. The molecular conformation is stabilized by intramolecular NH?O hydrogen bond. The crystal packing shows that the molecules form centrosymmetric dimers connected by NH?S hydrogen bonds. The vibrational properties have been studied by FTIR and FT-Raman spectroscopy along with quantum chemical calculations at the B3LYP/6-311 + G^* level of approximation. The main normal modes related with the thioamide bands are discussed.