DFT and Raman spectroscopy of porphyrin derivatives: Tetraphenylporphine (TPP)

Raman spectrum of the meso tetraphenylporphine (TPP) deposited onto smooth copper surface as thin film were recorded in the region 200–1700 cm⁻¹. To investigate the effect of meso-phenyl substitution rings on the vibrational spectrum of free base porphyrin, we calculated Raman and infrared (IR) spectra of the meso-tetraphenylporphine (TPP), meso tetramethylporphine (TMP), copper (II)porphine (CuPr) and free base porphine (FBP) at the B3LYP/6-311+G(d,p) level of the density functional theory (DFT). The observed Raman spectrum of the TPP is assigned based on the calculated its Raman spectrum in connection with the calculated spectra of the TMP, CuPr and FBP by taking into account of their corresponding vibrational motions of the Raman modes of frequencies. Results of the calculations clearly indicated that the meso tetraphenyl substitution rings are totally responsible for the observed Raman bands at ∼1593, 1234 and 1002 cm⁻¹. The calculated and observed Raman spectra also suggested that the observed Raman band with a medium intense at 962 cm⁻¹ might result from the surface plasmon effect. Furthermore, the observed Raman bands with medium intense at ∼334 and ∼201 cm⁻¹ are as results of the dimerization or aggregation of the TPP or would be that related to intramolecular interaction. We also calculated IR spectra of these molecules at same level of the theory. To investigate the solvent effect on the vibrational spectrum of porphine, the Raman and IR spectra of the TPP and FBP are calculated in solution phase where water used as solvent. The results of these calculation indicated that there is no any significant effect on the vibrational spectrum of the TPP.     

Seven-coordinate rhenium(III) complexes of 1-(2-pyridylazo)-2-naphtholate: X-ray studies,spectroscopic characterization and DFT calculations

The reactions of [ReX₃(MeCN)(PPh₃)₂] (X = Cl or Br) with 1-(2-pyridylazo)-2-naphthol (HPAN) have been examined and the [ReBr(PAN)₂] · 2CHCl₃ (1) and [ReCl(PAN)₂] (2) complexes have been obtained. The both complexes have been structurally and spectroscopically characterized, and compound 1 has been additionally studied by magnetic measurements. The magnetic behavior is characteristic of mononuclear seven-coordinated Re(III) complex with d⁴ low-spin configuration, which gives diamagnetic ground state.     

Resonance Raman investigation and semiempirical calculations of the bis(dicyanomethylene)croconate ion

The assignments of the optical and vibrational spectra of bis(dicyano)croconate are proposed on the basis of the resonance Raman excitation profiles as well as semi-empirical calculations at the AM1 and PM3 levels. The absorption band at 532 nm is assigned to a π→π* transition, involving a molecular orbital delocalized over the pseudo-oxocarbon ring, whereas the one at 442 nm is assigned to a transition localized at the CN moieties. The calculation of the excitation profiles was performed using the transform method with a simple model of displaced harmonic oscillators, and in addition, the same model was used to reproduce the π→π* absorption bandshape within the time-dependent formalism.     

Electronic structure and Raman spectroscopy study of dibarium magnesium orthoborate,Ba2Mg(BO3)2

The samples of dibarium magnesium orthoborate Ba₂Mg(BO₃)₂ were synthesized by solid-state reaction. The X-ray diffraction (XRD) patterns and Raman spectra of the samples were collected. Electronic structure and vibrational spectroscopy of Ba₂Mg(BO₃)₂ were systematically investigated by first principle calculation. A direct band gap of 4.4 eV was obtained from the calculated electronic structure results. The top valence band is constructed from O 2p states and the low conduction band mainly consists of Ba 5d states. Raman spectra for Ba₂Mg(BO₃)₂ polycrystalline were obtained at ambient temperature. The factor group analysis results show the total lattice modes are 5E_u + 4A_2u + 5E_g + 4A_1g + 1A_2g + 1A_1u, of which 5E_g + 4A_1g are Raman-active. Furthermore, we obtained the Raman active vibrational modes as well as their eigenfrequencies using first-principle calculation. With the assistance of the first-principle calculation and factor group analysis results, Raman bands of Ba₂Mg(BO₃)₂ were assigned as E_g (42 cm⁻¹), A_1g (85 cm⁻¹), E_g (156 cm⁻¹), E_g (237 cm⁻¹), A_1g (286 cm⁻¹), E_g (564 cm⁻¹), A_1g (761 cm⁻¹), A_1g (909 cm⁻¹), E_g (1165 cm⁻¹). The strongest band at 928 cm⁻¹ in the experimental spectrum is assigned to totally symmetric stretching mode of the BO₃ units.     

OH-Induced shift from carbon to oxygen acidity in the side-chain deprotonation of 2-, 3- and 4-methoxybenzyl alcohol radical cations in aqueous solution: results from pulse radiolysis and DFT calculations

DFT calculations have been carried out for 2-, 3- and 4-methoxybenzyl alcohol radical cations (1⁺, 3⁺ and 4⁺, respectively) and the α-methyl derivatives 2⁺ and 5⁺ using the UB3LYP/6-31G(d) method. The theoretical results have been compared with the experimental rate constants for deprotonation of 1⁺-5⁺ under acidic and basic conditions. In acidic solution, the decay of 1⁺-5⁺ proceeds by cleavage of the C-H bond, while in the presence of ⁻OH all the radical cations undergo deprotonation from the α-OH group. This pH-dependent change in mechanism has been interpreted qualitatively in terms of simple frontier molecular orbital theory. The ⁻OH induced α-O-H deprotonation is consistent with a charge controlled reaction, whereas the C-H deprotonation, observed when the base is H₂O, appears to be affected by frontier orbital interactions.     

Resonance Raman spectroscopy of mass selected Al2 in an argon matrix

In an excitation range of 620–760 nm, resonance Raman spectra of aluminum dimers (Al₂) in an argon matrix have been obtained for the first time. Temperature annealing experiments were performed to remove Raman lines attributed site effects caused by the Al₂/Ar matrix. We observe a single fundamental at 293.3 (5) cm⁻¹ along with a progression up to 1149 (1) cm⁻¹. Taking successive differences of band centers we obtain spectroscopic constants for the ground state fundamental, ω_e=297.5 (5) cm⁻¹, the anharmonicity, ω_ex_e=1.68 (8) cm⁻¹. Our results are in close agreement with previous experimental results for Al₂ which designate the ground state as a ³Π_u state, and may be considered as confirmation of this assignment.     

四-(对-磺基苯基)卟啉二酸(H_4~(2+)TSPP)分子聚集体的共振喇曼光谱研究

研究了四－（对－磺基苯基）卟啉二酸（Ｈ２＋４ＴＳＰＰ）的Ｊ－聚集体共振喇曼光谱,用氘代法考察了各喇曼谱带的同位素位移．指认３条低波数喇曼带为分子聚集体的晶格模．喇曼光谱退偏比测量表明,聚集体中Ｈ２＋４ＴＳＰＰ的对称性较分子态降低．比较游离碱Ｈ２ＴＳＰＰ和分子态Ｈ２＋４ＴＳＰＰ共振喇曼光谱讨论了聚集体中Ｈ２＋４ＴＳＰＰ的结构变化．Ｈ２＋４ＴＳＰＰ在聚集体中以接近面对面方式排列     

The infrared and Raman spectra, ab initio calculations and spectral assignments of cyclopropylmethyl dichlorosilane (c-C3H5)SiCl2CH3

Raman spectra of cyclopropylmethyl dichlorosilane (c-C₃H₅)SiCl₂CH₃ as a liquid were recorded at 293 K and polarization data were obtained. Additional Raman spectra were recorded at various temperatures between 293 and 163 K, and intensity changes of certain bands with temperature were detected. No crystallization was ever obtained in the Raman cryostat in spite of extensive annealing. The infrared spectra have been studied as a vapour, as an amorphous solid at 78 K and as a liquid in the range 600-100 cm⁻¹. No infrared bands present in the vapour or liquid seemed to vanish upon cooling, and the sample never formed crystals on the CsI window of an infrared cryostat.The compound exists a priori in two conformers, syn and gauche, and the experimental results suggest an equilibrium in which the gauche conformer has 1.64 kJ mol⁻¹ lower enthalpy than syn in the liquid, leading to 20% syn at ambient temperature. Most of the syn bands were situated close to the corresponding gauche bands and it was difficult to obtain reliable ΔH values.B3LYP calculations with various basis sets and the CBS-QB3 and G2 and G3 models were employed, yielding the conformational enthalpy difference ΔH (syn-gauche) between 2.6 and 3.4 kJ mol⁻¹. Infrared and Raman intensities, polarization ratios and vibrational frequencies for the syn and gauche conformers were calculated. Instead of scaling the calculated wavenumbers in the harmonic approximation, calculations from B3LYP/cc-pVTZ were derived in the anharmonic approximation. In most cases these values were in good agreement with the experimental results for 38 observed modes of the gauche and 8 modes of the syn conformer with a deviation of ca. 1%.     

Structural and vibrational study on N-(biphenyl-2-thiocarbamoyl)-4-phenylcarboxamide

A new thiourea derivative, N-(biphenyl-2-thiocarbamoyl)-4-phenylcarboxamide, is synthesized and characterized by elemental analysis, FTIR, NMR and the single crystal X-ray diffraction study. The title compound crystallizes with two molecules in the asymmetric unit. The dihedral angle between the two aromatic rings in the biphenyl unit is 47.9(2) and 56.52(19)°, respectively, for the two molecules in the asymmetric unit. The molecular conformation is stabilized by intramolecular NH?O hydrogen bond. The crystal packing shows that the molecules form centrosymmetric dimers connected by NH?S hydrogen bonds. The vibrational properties have been studied by FTIR and FT-Raman spectroscopy along with quantum chemical calculations at the B3LYP/6-311 + G^* level of approximation. The main normal modes related with the thioamide bands are discussed.     

密度泛函理论研究5-单苯基卟啉分子的几何结构和拉曼光谱

利用密度泛函理论(DFT)计算了5-单苯基卟啉(H2MPP)的几何结构和拉曼振动频率. 计算表明, 单个次甲基位置上的苯基取代降低了卟啉骨架大环的对称性. 苯基团取代对次甲基位置附近结构的影响较大, 而对吡咯环结构的影响较小. 计算给出的拉曼振动频率(校正因子为0.971)与实验测量数据吻合较好, 均方根误差(RMS)小于6.7 cm-1. 根据理论计算结果对实测拉曼光谱进行了指认, 计算分析和实验观察同时表明, 单个次甲基位置上的苯基取代导致卟啉大环的一些平面内简正振动, 如ν6、ν20、ν24和ν32等简正振动发生分裂. 分析认为其根本原因为单苯基取代导致的卟啉骨架大环对称性的降低.     

四-（4-吡啶基）卟啉二酸聚集体的共振拉曼光谱

研究了近激子吸收带激发下四-（4-吡啶基）卟啉二酸（H8TPyP^6＋）聚集体的共振拉曼光谱。测量了H8TPyP^6＋单体和聚集体的紫外可见吸收谱和共振光散射光谱．在氘代位移的基础上结合相关体系振动光谱研究,对测得的H8TPyP^6＋单体和聚集体的拉曼谱带进行了指认．聚集体的形成导致H8TPyP^6＋的卟啉环CC／CN面内伸缩振动向低波数方向位移2-6cm^-1,而卟啉环鞍形面外振动带向高波数方向位移12cm^-1．基于拉曼谱带的强度和频率变化分析了聚集引起的H8TPyP^6＋分了内结构变化和分子间氢键作用．     

NIR surface enhanced Raman spectroscopy and bands assignment by DFT calculations of non-natural β-amino acids

FT-Raman and NIR surface-enhanced Raman (SER) spectroscopies have been applied to the vibrational characterization of non-natural β-amino acids, 3-amino-3-(furan-2yl)-propionic acid and 3-amino-3-[(5-benzothiazole-2yl)-furan-2yl]-propionic acid. Semiempirical and density-functional theory (DFT) calculations on both amino acids in their zwitterionic forms have been performed in order to find the optimized structure and to compute the vibrational spectra. The NIR SER spectra in silver hydrosol and Ag-coated filter paper have been recorded, compared and analyzed. Good SER spectra were obtained at the pH values where dipolar ion structures are present proving the chemisorption of β-amino acid molecules on the silver surface via positively charged group. The carboxylate anion of both β-amino acids are parallel oriented, whereas the plane of rings is oriented perpendicular to the silver surface.     

Vibrational spectroscopy and DFT calculations of 1,3-dibromo-2,4,6-trimethylbenzene: Anharmonicity,coupling and methyl group tunneling

The Raman, IR and INS spectra of 1,3-dibromo-2,4,6-trimethylbenzene (DBMH) were recorded in the 80–3200 cm⁻¹ range. The molecular conformation and vibrational spectra of DBMH were computed at the MPW1PW91/LANL2DZ level. Except for the methyl 2 environment, the agreement between the DFT calculations and the neutron diffraction structure is almost perfect (deviations < 0.01 Å for bond lengths, <0.2° for angles). The frequencies of the internal modes of vibration were calculated with the harmonic and anharmonic approximations; the later method yields results that are in remarkable agreement with the spectroscopic data, resulting in a confident assignment of the vibrational bands. Thus, no scaling is necessary. The coupling, in phase or anti-phase, of the motions of symmetrical CBr and CMe bonds is highlighted. Our DFT calculations suggest that the torsion of methyl groups 4 and 6 is hindered in deep wells, whereas methyl group 2 is a quasi-free rotor. The failure of the calculations to determine the frequencies of the methyl torsional modes is explained as follows: DFT does not consider the methyl spins and assumes localization of the protons, whereas the methyl groups must be treated as quantum rotors.     

Synthesis,spectroscopic characterization,X-ray structure and DFT calculations of copper(II) complex with 2-(2-pyridyl)benzimidazole

The reaction of copper(II) nitrate trihydrate and 2-(2-pyridyl)benzimidazole (pybzim) leads to [Cu(pybzim)₂(NO₃)](NO₃). The compound has been studied by IR, UV–Vis spectroscopy and X-ray crystallography. The electronic structure of the [Cu(pybzim)₂(NO₃)]⁺ cation has been calculated with the density functional theory (DFT) method. The spin-allowed doublet–doublet electronic transitions of [Cu(pybzim)₂(NO₃)]⁺ have been calculated with the time-dependent DFT method, and the UV–Vis spectrum of the title compound has been discussed on this basis.     

X-ray diffraction studies of two azametallatranes. Peculiarities of structures of N,N′,N″-tris(trimethylsilyl)azametallatranes using DFT calculations

Single crystal structures of N(CH₂CH₂NSiMe₃)₃Si-Vinyl (1) and N(CH₂CH₂NSiMe₃)₃Si-n-Butyl (2) were determined by X-ray diffraction studies: both compounds show weak transannular N_ax→M interactions (1, d(N_ax→Si)=2.712(1) Å, 2, d(N_ax→Ge)=2.743(3) Å). General trends for molecular structures of the group 14 elements (Si, Ge, Sn) azametallatranes are discussed with also included DFT calculations data.     

Experimental and theoretical studies on vibrational spectra of 4-(2-furanylmethyleneamino)antipyrine, 4-benzylideneaminoantipyrine and 4-cinnamilideneaminoantipyrine

This work deals with the IR and Raman spectroscopy of 4-(2-furanylmethyleneamino) antipyrine (FAP), 4-benzylideneaminoantipyrine (BAP) and 4-cinnamilideneaminoantipyrine (CAP) by means of experimental and quantum chemical calculations. The equilibrium geometries, harmonic frequencies, infrared intensities and Raman scattering activities were calculated by density functional B3LYP method with the 6-31G(d) basis set. The comparisons between the calculated and experimental results covering molecular structures, assignments of fundamental vibrational modes and thermodynamic properties were investigated. The optimized molecular geometries have been compared with the experimental data obtained from XRD data, which indicates that the theoretical results agree well with the corresponding experimental values. For the three compounds, comparisons and assignments of the vibrational frequencies indicate that the calculated frequencies are close to the experimental data, and the IR spectra are comparable with some slight differences, whereas the Raman spectra are different clearly and the strongest Raman scattering actives are relative tightly to the molecular conjugative moieties linked through their Schiff base imines. The thermodynamic properties (heat capacities, entropies and enthalpy changes) and their correlations with temperatures were also obtained from the harmonic frequencies of the optimized strucutres.     

Simulation of the Raman spectra of zwitterionic glycine + nH2O (n = 1, 2, …, 5) by means of DFT calculations and comparison to the experimentally observed Raman spectra of glycine in aqueous medium

Raman spectra of an aqueous solution of glycine (Gly) have been recorded in the range of 400-2000 cm⁻¹. In aqueous solution, glycine molecules exist in their zwitterionic form, having two opposite charged poles, COO⁻ and NH₃⁺. The zwitterionic structure of glycine (ZGly) is stabilized by the hydrogen bond interaction of water (W) molecules. In the present report, we have optimized the ground state geometries of different hydrogen bonded complexes of [ZGly + (W)_n=1-5] in aqueous medium using DFT calculations at the B3LYP/6-311++G(d) level of theory. A comparative discussion on the structural details and binding energies (BEs) of each conformer has been also done. The theoretical Raman spectra were calculated corresponding to the most stable [ZGly + (W)_n=1-5] conformers. The theoretically simulated Raman spectra of each stable conformer were compared with experimentally observed Raman spectra to explore the number of water molecules needed for stabilizing the structure of ZGly. The theoretically simulated Raman spectra corresponding to the most stable conformer of [ZGly + (W)₅] having a BE of −22.8 kcal/mol, are matching nicely with the experimentally observed Raman spectra. Thus, on the basis of the above observations, we conclude that the conformer, [ZGly + (W)₅] is the most probable conformer in the aqueous medium. We also believe that in the conformer, [ZGly + (W)₅] the five water molecules are arranged around the ZGly in such a way that the effect of steric hindrance is less compared to the other conformers. The dipole-dipole interaction potential (DDP) is also calculated corresponding to the strongest hydrogen bond for each [ZGly + (W)_n=1-5] conformer.     

Resonance Raman Spectroscopy,and Its Application to Inorganic Chemistry. New Analytical Methods (27)

Resonance Raman spectra are obtained when the wave number of the exciting radiation is close to, or coincident with, that of an electronic transition of the scattering species. Such spectra are usually characterized by a very large enhancement of the intensities of particular Raman bands, sometimes with the appearance of intense overtone and combination tone progressions. The technique provides detailed information about excited electronic states because it is only the vibrational modes associated with the chromophore that are resonance-Raman active. Additionally, the high sensitivity is such that compounds at concentrations as low as 10^?6 mol/L may be detected, enabling resonance Raman spectroscopy to be used as an analytical tool and for the study of chromophores in molecules of biological interest.     

Weak interactions between furfuryl and equatorial dioxime ligand in furfuryl(O2)Co(dmgH)2Py: NMR, X-ray and DFT calculations

The crystal and molecular structure of furfuryl(O₂)Co(dmgH)₂Py (1) has been determined by X-ray diffraction analysis. In the molecular structure of 1, the furfuryl ring oxygen is pointing inwards and is very close to one of the dmgH (Me) (2.625 Å). It shows unusual C-H···O weak interaction which must be responsible for the observed 1:3 ratio of dmgH methyl protons in NMR spectrum. Also, theoretical calculations using DFT have been performed on 1 for the Co-O and CH₂-C(furfuryl) bond rotation. Conformational energy diagrams derived from theoretical calculations also indicate that in most stable conformer the furfuryl ring oxygen is very close to one of the dmgH (Me) groups.