Hierarchical Organization of Ferrocene–Peptides

Hierarchical self‐assembly of disubstituted ferrocene (Fc)–peptide conjugates that possess Gly‐Val‐Phe and Gly‐Val‐Phe‐Phe peptide substituents leads to the formation of nano‐ and micro‐sized assemblies. Hydrogen‐bonding and hydrophobic interactions provide directionality to the assembly patterns. The self‐assembling behavior of these compounds was studied in solution by using ¹H NMR and circular dichroism (CD) spectroscopies. In the solid state, attenuated total reflectance (ATR) FTIR spectroscopy, single‐crystal X‐ray diffraction (XRD), powder X‐ray diffraction (PXRD), and scanning electron microscopy (SEM) methods were used. Spontaneous self‐assembly of Fc–peptides through intra‐ and intermolecular hydrogen‐bonding interactions induces supramolecular assemblies, which further associate and give rise to fibers, large fibrous crystals, and twisted ropes. In the case of Fc[CO‐Gly‐Val‐Phe‐OMe]₂ ( 1 ), molecules initially interact to form pleated sheets that undergo association into long fibers that form bundles and rectangular crystalline cuboids. Molecular offsets and defects, such as screw dislocations and solvent effects that occur during crystal growth, induce the formation of helical arrangements, ultimately leading to large twisted ropes. By contrast, the Fc–tetrapeptide conjugate Fc[CO‐Gly‐Val‐Phe‐Phe‐OMe]₂ ( 2 ) forms a network of nanofibers at the supramolecular level, presumably due to the additional hydrogen‐bonding and hydrophobic interactions that stem from the additional Phe residues.     

Formation mechanism of supramolecular hydrogels in the presence of L-phenylalanine derivative as a hydrogelator

A novel chiral hydrogelator, L-phenylalanine derivative can self-assemble in aqueous media at different pH values to form supramolecular hydrogels. The images of the FE-SEM indicate that different aggregates of TC(18)PheBu in morphology were formed, which further lead to the formation of spherical crystallites as observed by polarized optical microscope (POM). The FT-IR spectra of the supramolecular hydrogels reveal that intermolecular hydrogen-bonding and hydrophobic interactions are the driving forces for the self-assembly of TC(18)PheBu. Fluorescence spectra of TC(18)PheBu in aqueous solutions in the presence of pyrene as a probe further confirm the importance of hydrophobic interactions for the self-assembly. The circular dichroism (CD) spectra of TC(18)PheBu in supramolecular hydrogels in the presence of KF indicate that the hydrogen-bonding interaction can be disrupted by fluoride ions, which further confirm the importance of hydrogen bonding for the self-assembly of TC(18)PheBu.     

Programmed hyperhelical supramolecular assembly of nickel phthalocyanine bearing enantiopure 1-(p-tolyl)ethylaminocarbonyl groups

The present paper reports uniqueness of a simple, programmed design of disk-shaped homochiral nickel phthalocyanine (Pc) molecules bearing four enantiomerically pure 1-(p-tolyl)ethylaminocarbonyl groups at their peripheral positions, (Pc-(R) and Pc-(S)), and their controlled self-organization into mesoscopic supramolecular helical fibers with a preferential handedness in solution and onto solid surfaces. A combination of four fundamental intermolecular interactions, including quadruple hydrogen bonding, pi-pi stacking, homochiral interactions of the enantiopure bulky aralkyl entities, and noncoordinating nature of nickel ion of the Pc molecules afforded a high thermal stability of the Pc self-assembly in chloroform (CHCl(3)), tetrahydrofuran, and o-dichlorobenzene and onto hydrophilic mica and hydrophobic HOPG surfaces. A higher-ordered helical self-assembly of Pc disks was observed in these solutions (approximately 200 Pc molecules), while the self-assembly was completely dissociated into monomeric species in N,N-dimethylformamide due to a loss of hydrogen-bonding interactions between Pc molecules. Supramolecular chirality in the hierarchical self-assembly of Pc molecules originated from the presence of (R)- or (S)-chiral centers in the peripheral tails, which rotate noncovalently linked molecular building blocks to effectively form the helical architectures. The helical Pc nanofibers dissolved in CHCl(3), estimated to be ca. 70 nm from peak molecular weight obtained by SEC analysis, acts as a building block for higher-order helical fibers (ca. 1 microm) at single molecular level on the solid surfaces, as demonstrated by the dynamic force mode atomic force microscopy. Regardless of hydrophilic and hydrophobic substrates, the interaction between these Pc molecules and the solid surfaces could not affect the morphology of helical assemblies, indicating a unique robustness of these assemblies.     

Supramolecular polymers in aqueous medium: rational design based on directional hydrophobic interactions

Self-assembly in aqueous medium is of primary importance and widely employs hydrophobic interactions. Yet, unlike directional hydrogen bonds, hydrophobic interactions lack directionality, making difficult rational self-assembly design. Directional hydrophobic motif would significantly enhance rational design in aqueous self-assembly, yet general approaches to such interactions are currently lacking. Here, we show that pairwise directional hydrophobic/π-stacking interactions can be designed using well-defined sterics and supramolecular multivalency. Our system utilizes a hexasubstituted benzene scaffold decorated with 3 (compound 1) or 6 (compound 2) amphiphilc perylene diimides. It imposes a pairwise self-assembly mode, leading to well-defined supramolecular polymers in aqueous medium. the assemblies were characterized using cryogenic electron microscopy, small-angle X-ray scattering, optical spectroscopy, and EPR. Supramolecular polymerization studies in the case of 2 revealed association constants in 10(8) M(-1) range, and significant enthalpic contribution to the polymerization free energy. The pairwise PDI motif enables exciton confinement and localized emission in the polymers based on 1 and 2's unique photonic behavior, untypical of the extended π-stacked systems. Directional pairwise hydrophobic interactions introduce a novel strategy for rational design of noncovalent assemblies in aqueous medium, and bring about a unique photofunction.     

Hydrothermal Synthesis and Characterization of a Novel Supramolecular Network Compound [Co(IN2)(H2O)4](IN=Isonicotinate)

IntroductionSupramolecular compounds are space polymerswith an infinite one- or a multi- dimension structureformed via non- valent interactions[1,2 ] and have thefunctions of recognition,transformation and self-assembly.So,a considerable research effort hasbeen devoted to the building of supramolecularstructures by organic and inorganic chemists inrecent years[3,4 ] . Covalent and hydrogen bonds arethe most widely used tools to generate a greatvariety of one- ,two- and three- dimensional eithe…     

Molecular structure of helical supramolecular dendrimers

The molecular structure of helical supramolecular dendrimers generated from self-assembling dendrons and dendrimers and from self-organizable dendronized polymers was elucidated for the first time by the simulation of the X-ray diffraction patterns of their oriented fibers. These simulations were based on helical diffraction theory applied to simplified atomic helical models, followed by Cerius2 calculations based on their complete molecular helical structures. Hundreds of samples were screened until a library containing 14 supramolecular dendrimers and dendronized polymers provided a sufficient number of helical features in the X-ray diffraction pattern of their oriented fibers. This combination of techniques provided examples of single-9(2) and -11(3) helices, triple-6(1), -8(1), -9(1), and -12(1) helices, and an octa-32(1) helix that were assembled from crownlike dendrimers, hollow and nonhollow supramolecular crownlike dendrimers, hollow and nonhollow supramolecular disklike dendrimers, and hollow and nonhollow supramolecular and macromolecular helicene-like architectures. The method elaborated here for the determination of the molecular helix structure was transplanted from the field of structural biology and will be applicable to other classes of synthetic helical assemblies. The determination of the molecular structure of helical supramolecular assemblies is expected to provide an additional level of precision in the design of helical functional assemblies resembling those from biological systems.     

Unraveling the mechanism of nanotube formation by chiral self-assembly of amphiphiles

The self-assembly of nanotubes from chiral amphiphiles and peptide mimics is still poorly understood. Here, we present the first complete path to nanotubes by chiral self-assembly studied with C(12)-β(12) (N-α-lauryl-lysyl-aminolauryl-lysyl-amide), a molecule designed to have unique hybrid architecture. Using the technique of direct-imaging cryo-transmission electron microscopy (cryo-TEM), we show the time-evolution from micelles of C(12)-β(12) to closed nanotubes, passing through several types of one-dimensional (1-D) intermediates such as elongated fibrils, twisted ribbons, and coiled helical ribbons. Scattering and diffraction techniques confirm that the fundamental unit is a monolayer lamella of C(12)-β(12), with the hydrophobic tails in the gel state and β-sheet arrangement. The lamellae are held together by a combination of hydrophobic interactions, and two sets of hydrogen-bonding networks, supporting C(12)-β(12) monomers assembly into fibrils and associating fibrils into ribbons. We further show that neither the "growing width" model nor the "closing pitch" model accurately describe the process of nanotube formation, and both ribbon width and pitch grow with maturation. Additionally, our data exclusively indicate that twisted ribbons are the precursors for coiled ribbons, and the latter structures give rise to nanotubes, and we show chirality is a key requirement for nanotube formation.     

Homochiral supramolecular polymerization of an "S"-shaped chiral monomer: translation of optical purity into molecular weight distribution

An "S"-shaped chiral motif of a p-xylylene-bridged bis(cyclic dipeptide) (1), having four hydrogen-bonding amide functionalities, formed a homochiral supramolecular polymer in solution. X-ray crystallography of a slightly modified version of 1 for an enhanced crystallinity showed one-dimensional columnar assemblies via four double hydrogen-bonding interactions. Model studies with half-protected analogues of 1 indicated a nearly perfect enantioselectivity in hydrogen-bonding dimerization. When 1 was not racemic but enriched in either of the enantiomers, a supramolecular polymer with a bimodal molecular weight distribution resulted, due to the formation of two homochiral polymers with different molecular weights. By taking advantage of this, separation of optically pure 1 from an enantiomerically unbalanced mixture was possible by means of size-exclusion chromatography.     

Hierarchical self-assembly of a biomimetic diblock copolypeptoid into homochiral superhelices

The aqueous self-assembly of a sequence-specific bioinspired peptoid diblock copolymer into monodisperse superhelices is demonstrated to be the result of a hierarchical process, strongly dependent on the charging level of the molecule. The partially charged amphiphilic diblock copolypeptoid 30-mer, [N-(2-phenethyl)glycine](15)-[N-(2-carboxyethyl)glycine](15), forms superhelices in high yields, with diameters of 624 ± 69 nm and lengths ranging from 2 to 20 μm. Chemical analogs coupled with X-ray scattering and crystallography of a model compound have been used to develop a hierarchical model of self-assembly. Lamellar stacks roll up to form a supramolecular double helical structure with the internal ordering of the stacks being mediated by crystalline aromatic side chain-side chain interactions within the hydrophobic block. The role of electrostatic and hydrogen bonding interactions in the hydrophilic block is also investigated and found to be important in the self-assembly process.     

Template-induced and molecular recognition directed hierarchical generation of supramolecular assemblies from molecular strands

The linear oligo-isophthalamide strand 1 undergoes a conformational reorganization upon binding of a cyanuric acid template as effector to afford a helical disklike object possessing radially disposed alkyl residues. Solvophobic and stacking interactions, in turn, drive a "second level" self-assembly of the templated structure, the stacking of the helical disks, to yield fibers as revealed by electron microscopy. These data provide insight into the interplay of the different structural and interactional features of the molecular components towards the formation of supramolecular fibers through sequential hierarchical self-assembly events and suggest design strategies for the effector-controlled generation of related supramolecular assemblies.     

Self-Assembly and Ordering of Peptide-Based Cavitands in Water and DMSO: The Power of Hydrophobic Effects Combined with Neutral Hydrogen Bonds

Directional self-assembly of uncharged molecules in water is a major challenge in supramolecular chemistry. Herein, it is demonstrated that peptide-based cavitands wrap around a hydrophobic core (fullerene C₆₀) by a combination of the hydrophobic effect and hydrogen-bonding interactions to form highly ordered three-component complexes in water that resemble the molten-globule stage of protein folding. The complexes were characterized by DOSY NMR spectroscopy, small-angle X-ray scattering, and circular dichroism, and their structures were confirmed by X-ray crystallography. Enhancement of the CD signals by nearly one order of magnitude and increased hydrolytic stability of hydrazone bonds of the complexes relative to the nonassembled species were observed. In contrast, DMSO and DMSO/water mixtures were found to be highly disintegrative for these complexes. Interestingly, some cavitands can only be synthesized in the presence of the hydrophobic template followed by disassembly of the complexes.     

Supramolecular adducts of mesocyclic diamines with various carboxylic acids: Charge-assisted hydrogen-bonding in molecular recognition

Aggregation of saturated mesocyclic diamine 1,4-diazacycloheptane (dach) or piperazine (pipz) and diversiform carboxylic acids with mono- or di-carboxyls yields a series of novel binary supramolecular adducts via two-point molecular recognition. All the supramolecular assemblies were obtained by solvent evaporation method from different media. X-ray single-crystal diffraction analyses reveal that these supramolecular moieties present 1D chain motif, 2D flat, corrugated sheet structures and 3D CdSO₄, pillar-layered networks through carboxylate-amide N–H⋯O, as well as its proton transfer form N⁺–H⋯O⁻, carboxyl head to tail O–H⋯O, and extended hydrogen-bonding interactions. Their compositions and structures were also confirmed by Fourier transform infrared (FT-IR) spectroscopy. Thermal stability of these binary crystalline adducts has been investigated by thermogravimetric analysis (TGA), suggesting similar thermal stabilities.     

In Situ Controlled Construction of a Hierarchical Supramolecular Chiral Liquid-Crystalline Polymer Assembly

Hierarchical supramolecular chiral liquid-crystalline (LC) polymer assemblies are challenging to construct in situ in a controlled manner. Now, polymerization-induced chiral self-assembly (PICSA) is reported. Hierarchical supramolecular chiral azobenzene-containing block copolymer (Azo-BCP) assemblies were constructed with π–π stacking interactions occurring in the layered structure of Azo smectic phases. The evolution of chirality from terminal alkyl chain to Azo mesogen building blocks and further induction of supramolecular chirality in LC BCP assemblies during PICSA is achieved. Morphologies such as spheres, worms, helical fibers, lamellae, and vesicles were observed. The morphological transition had a crucial effect on the chiral expression of Azo-BCP assemblies. The supramolecular chirality of Azo-BCP assemblies destroyed by 365 nm UV irradiation can be recovered by heating–cooling treatment; this dynamic reversible achiral–chiral switching can be repeated at least five times.     

Lamellar bridged silsesquioxanes: self-assembly through a combination of hydrogen bonding and hydrophobic interactions

The synthesis of four bis(trialkoxysilylated) organic molecules capable of self-assembly--(EtO)3Si(CH2)3NHCONH-(CH2)n-NHCONH(CH2)3Si(OEt)3 (n = 9-12)--associating urea functional groups and alkylidene chains of variable length is described. These compounds behave as organogelators, forming supramolecular assemblies thanks to the intermolecular hydrogen bonding of urea groups. Whereas fluoride ion-catalysed hydrolysis in ethanol in the presence of a stoichiometric amount of water produced amorphous hybrids, acid-catalysed hydrolysis in an excess of water gave rise to the formation of crystalline lamellar hybrid materials through a self-organisation process. The structural features of these nanostructured organic/inorganic hybrids were analysed by several techniques: attenuated Fourier transformed infrared (ATR-FTIR), solid-state NMR spectroscopy (13C and 29Si), scanning and transmission electron microscopy (SEM and TEM) and powder X-ray diffraction (PXRD). The reaction conditions, the hydrophobic properties of the long alkylidene chains and the hydrogen-bonding properties of the urea groups are determining factors in the formation of these self-assembled nanostructured hybrid silicas.     

The curious case of 12-hydroxystearic acid — the Dr. Jekyll & Mr. Hyde of molecular gelators

A comprehensive review of the features driving self-assembly of 12-hydroxystearic acid (12-HSA), a low-molecular-weight gelator, and its applications in drug delivery and as other soft innovative materials are presented herein. 12-HSA is obtained via hydrogenation of ricinoleic acid naturally found in high concentrations in castor oil. The ability of 12-HSA to self-assemble is associated with the presence, position, and enantiomeric purity of the hydroxy group along the fatty acid chain. The polarity and position of the hydroxyl group facilitates more interaction possibilities leading to its exceptional self-assembly behavior giving rise to fibers, ribbons, and tubes in a variety of solvents. Upon self-assembly, 12-HSA undergoes crystallization resulting in the formation of high aspect ratio fibrillar structures due to noncovalent, intermolecular interactions forming self-spanning, three-dimensional networks (called self-assembled fibrillar networks) in both aqueous and organic solvents. Herein, emphasis is placed on emerging applications of 12-HSA supramolecular assemblies (i.e. responsive aqueous foams, gelled complex fluids, drug delivery systems, hydrogels, organogels, xerogels, and aerogel). The vast literature is compiled associated with 12-HSA self-assembly exploring supramolecular assemblies based on one ambidextrous gelator capable of assembling in aqueous and nonaqueous solvent.     

Hierarchical self-assembly of all-organic photovoltaic devices

Photovoltaic devices built by a hierarchical self-assembly process using hydrogen-bonding terminated self-assembled monolayers (SAMs) on gold and the combination of a hydrogen-bonding barbituric acid appended fullerene and a complementary melamine terminated π-conjugated thiophene-based oligomer are presented. The incorporation of these electron donor (oligomer) and electron acceptor (methanofullerene) assemblies into simple photovoltaic (PV) devices as thin films leads to a 2.5 fold-enhancement in photocurrent compared to analogous systems comprising non-hydrogen-bonding C₆₀-oligomer systems, which is ascribed to higher molecular-level ordering. The modification of the gold electrode surface with self-assembled monolayers bearing hydrogen-bonding molecular recognition endgroups was seen to further enhance the PV response of the corresponding functional supramolecular device. This superposition of two types of self-assembly facilitates the generation of binary supramolecular fullerene-containing architectures. Importantly, all functional materials are accessible in a direct fashion.     

Self-assembly and characterization of hydrogen-bond-induced nanostructure aggregation.

A supramolecular system of a perylene derivative containing bis(2,6-diacylaminopyridine) units and a perylene bisimide bound through three hydrogen-bonds was synthesized and characterized. 1H NMR spectra confirmed the existence of hydrogen-bonding interactions between the perylene derivative (3) and the perylene bisimide (7). The photocurrent generation of the self-assembled 3.7 film was measured, and a cathodic photocurrent response was obtained. SEM images indicated that well-defined long fibers could be fabricated by self-assembly, by exploiting the hydrogen bonding interactions and pi-pi stacking interactions of perylene rings.     

Template-assisted ligand encapsulation; the impact of an unusual coordination geometry on a supramolecular pyridylphosphine-Zn(II)porphyrin assembly

The tris(para-pyridyl)phosphine template (1) has been used in conjunction with a series of meso-substituted Zn(II)-tetraphenylporphyrins complexes (2-10) to create supramolecular encapsulated ligand assemblies via Zn-N(pyr) interactions. The structural features of supramolecular ligand 1.[2](3) have been investigated in detail using X-ray crystallography, NMR specroscopy, and UV-vis spectroscopy. The pyridylphosphine-porphyrin stoichiometry determined in solution (1:3) differs markedly with that observed in the solid state (2:5, for assembly [1](2).[2](5)). The difference originates from an unusual coordination behavior of one of the Zn centers, which is octahedrally surrounded through double axial coordination by the pyridyl groups of the two different molecules of 1.     

Microporous organic materials from hydrophobic dipeptides

In the last few years dipeptides with two hydrophobic residues (hydrophobic dipeptides) have emerged as an unexpected source of stable microporous organic materials. Supramolecular self-assembly of the rather small building blocks is dictated by stringent demands on the hydrogen-bond formation by the peptide main chains and the aggregation of hydrophobic entities in the side chains. A systematic survey of structures derived from single-crystal X-ray diffraction studies has revealed the existence of two large classes of structures, differing in the dimensionality of the hydrogen-bonding patterns in the crystals and the nature of the channels. The present review summarizes the structural properties of the microporous dipeptides and discusses their potential applications.     

Reinforced self-assembly of hexa-peri-hexabenzocoronenes by hydrogen bonds: from microscopic aggregates to macroscopic fluorescent organogels

Hexa-peri-hexabenzocoronene derivatives (HBCs) that have hydrogen-bonding functionalities (either amido or ureido groups) adjacent to the aromatic cores have been synthesized to study the effects of intracolumnar hydrogen bonds on the self-assembly behavior of HBCs. The hydrogen bonds effectively increased the aggregation tendency of these compounds in solution. In the bulk state, the typical columnar supramolecular arrangement of HBCs was either stabilized substantially (1 a, 1 b, 2 a, and 2 b), or suppressed by dominant hydrogen-bonding interactions (3). For some of the compounds (1 a, 2 a, and 2 b), the supramolecular arrangement adopted in the liquid-crystalline state was even retained after annealing, presumably owing to the reinforcement of the pi-stacking interactions by the hydrogen bonds. Additionally, the combined effect of the hydrogen bonds and pi-stacking of the aromatic moieties led to the formation of fluorescent organogels, whereby some derivatives were further investigated as novel low molecular-mass organic gelators (LMOGs).