Assessing the performance of density functional theory for the electronic structure of metal-salens: the 3d(0)-metals

A series of metal-salen complexes of the 3d(0) metals Sc(III), Ti(IV), V(V), Cr(VI), and Mn(VII) have been explored using high-level electronic structure methods including coupled-cluster theory with singles, doubles, and perturbative triples as well as complete active-space third-order perturbation theory. The performance of three common density functional theory approaches has been assessed for both the geometries and the relative energies of the low-lying electronic states. The nondynamical correlation effects are demonstrated to be extremely large in all of the systems examined. Although density functional theory provides reasonable results for some of the systems, the overall agreement is quite poor. This said, the density functional theory approaches are shown to outperform the single-reference perturbation theory and coupled-cluster theory approaches for cases of strong nondynamical correlation.     

Marcus电子转移理论的科学性探讨

利用科学原理对Marcus电子转移理论的科学性进行了考察, 结果表明Marcus电子转移理论违背了能量守恒定律.     

A mode coupling theory description of the short- and long-time dynamics of nematogens in the isotropic phase

Optical heterodyne-detected optical Kerr effect (OHD-OKE) experimental data are pre-sented on nematogens 4-(trans-4-n-octylcyclohexyl)isothiocyanatobenzene (8-CHBT), and 4-(4-pentyl-cyclohexyl)-benzonitrile (5-PCH) in the isotropic phase. The 8-CHBT and 5-PCH data and previously published data on 4-pentyl-4-biphenylcarbonitrile (5-CB) are analyzed using a modification of a schematic mode coupling theory (MCT) that has been successful in describing the dynamics of supercooled liquids. At long time, the OHD-OKE data (orientational relaxation) are well described with the standard Landau-de Gennes (LdG) theory. The data decay as a single exponential. The decay time diverges as the isotropic to nematic phase transition is approached from above. Previously there has been no theory that can describe the complex dynamics that occur at times short compared to the LdG exponential decay. Earlier, it has been noted that the short-time nematogen dynamics, which consist of several power laws, have a functional form identical to that observed for the short time behavior of the orientational relaxation of supercooled liquids. The temperature-dependent orientational dynamics of supercooled liquids have recently been successfully described using a schematic mode coupling theory. The schematic MCT theory that fits the supercooled liquid data does not reproduce the nematogen data within experimental error. The similarities of the nematogen data to the supercooled liquid data are the motivation for applying a modification of the successful MCT theory to nematogen dynamics in the isotropic phase. The results presented below show that the new schematic MCT theory does an excellent job of reproducing the nematogen isotropic phase OHD-OKE data on all time scales and at all temperatures.     

Aging as a result of the implementation of the phenoptosis program

There are two main points of view on the driving force of aging: destructive action of free radicals generated by mitochondria and implementation of the genetic program. The free-radical theory dominating now asserts that there are no specific genes of aging, as the evolutionary theory proves inability of natural selection to differentiate separate individuals by longevity. The concept of programmed aging, named phenoptosis, has no wide recognition, since it contradicts postulates of the evolutionary theory of aging and, moreover, has no mechanism for the implementation of the program. The present review shows the following: (1) contrary to the statement of the evolutionary theory of aging, the species-specific longevity is controlled by selection but the interpopulation one rather than individual; hence, there are specific genes of aging; (2) primarily programmed process causing aging is a decrease in the bioenergetics level; and (3) this causes age-related increase of the level of free radicals. Hence, the free-radical theory should be incorporated into the theory of programmed aging as one of the components. The key diagram of the mechanism of programmed aging is presented.     

A time-dependent density functional theory investigation of the spectroscopic properties of the beta-subunit in C-phycocyanin

By using time-dependent density functional theory combined with the polarizable continuum model, a satisfactory assignment of the absorption and circular dichroism spectra and energy transfer flow of the beta-subunit in C-phycocyanin (C-PC) was achieved when the protonation of beta-84 and beta-155 phycocyanobilin (PCB) and their interaction with the protein moiety in C-PC have been taken into account. We attribute the main peak for both beta-84 and beta-155 as arising from the pi electron excitation of the pyrrole rings and the shoulder peak as arising from the charge transfer from the asparate residue to PCBH(+). The satisfactory agreement between theory and experiment suggests that F?rster resonance theory prevails such that energy transfer occurs from beta(s) (beta-155) to beta(f) (beta-84).     

老年性白内障与微量元素

参阅有关老年性白内障的文献．归纳其病因有四种学说:(1)老化学说;(2)醌体学说;(3)微量元素学说;(4)中医学说．按病因学说不同．用药各异．目前治疗老年性白内障药物有滴眼剂及内服剂,其中有一种新药名为除障灵．它是根据中医学说及微量元素学说，筛选中药制成,它含有丰富的锌、硒、铜、镁等微量元素．应用除障灵治疗老年性白内障患者102例(204只眼)，观察6个月至2年，有效率达95％，开创了治疗老年性白内障的新方法．     

Integral equation theory of randomly coupled multiblock copolymer melts: effect of block size on the phase behavior

The phase behavior of randomly coupled multiblock copolymer melts is studied using the polymer reference interaction site model integral equation theory. The molecules are modeled as flexible chains with random sequences of two types of blocks, each of which consists of the same number (R) of monomer beads. In the random copolymer (R=1) limit the theory predicts macrophase separation as the temperature is decreased for all values of the monomer correlation length lambda. For R>2, however, the theory predicts a microphase separation for values of lambda less than some critical value which increases as the block size increases.     

Applications of polymer rism theory to blends

Polymer RISM (reference interaction site model) theory is a theory of polymer systems in the liquid phase in which account for chemical realism can be made. Results are reported here of phase diagrams (spinodals) for blend systems calculated by means of this theory, using the mean spherical approximation as a closure. The systems investigated are an isotopic blend, a set of homopolymer/copolymer blends, and a model blend containing specific interactions.     

Theories of the chemical bond and its true nature

Two different models for chemical bond were developed almost simultaneously after the Schrödinger formulation of quantum theory. These are known as the valence bond (VB) and molecular orbital (MO) theories. Initially chemists preferred the VB theory and ignored the MO theory. Now the VB theory is almost dropped out of currency. The context of discovery and Linus Pauling’s overpowering influence gave the VB theory its initial advantage. The current universal acceptance of the MO theory is due to its ability to provide direct interpretation of many different types of experiments now being pursued. In current research both localized bonds and delocalized charge distributions play important roles and the MO theory has been successful in giving a good account of both.     

Temperature dependence of carbon-13 kinetic isotope effects of importance to global climate change

We report here a theoretical study of the 13C kinetic isotope effect (KIE) and its temperature dependence for the reaction OH + CH4 --> H2O + CH3, the major sink of atmospheric methane in the troposphere. The KIE values at various atmospherically significant temperatures were determined by direct dynamics using variational transition state theory with multidimensional tunneling contributions (VTST/MT). The potential energy surfaces (PESs) were generated by hybrid density functional theory as well as by recently developed doubly hybrid density functional theory methods. Comparisons of our calculated KIEs with experimental data and theoretical values in the literature reveal the critical contributions due to multidimensional tunneling and torsion anharmonicity as well as the critical issue of the choice of internal rotational axis.     

Extended multi-configuration quasi-degenerate perturbation theory: the new approach to multi-state multi-reference perturbation theory

The distinctive desirable features, both mathematically and physically meaningful, for all partially contracted multi-state multi-reference perturbation theories (MS-MR-PT) are explicitly formulated. The original approach to MS-MR-PT theory, called extended multi-configuration quasi-degenerate perturbation theory (XMCQDPT), having most, if not all, of the desirable properties is introduced. The new method is applied at the second order of perturbation theory (XMCQDPT2) to the 1(1)A(')-2(1)A(') conical intersection in allene molecule, the avoided crossing in LiF molecule, and the 1(1)A(1) to 2(1)A(1) electronic transition in cis-1,3-butadiene. The new theory has several advantages compared to those of well-established approaches, such as second order multi-configuration quasi-degenerate perturbation theory and multi-state-second order complete active space perturbation theory. The analysis of the prevalent approaches to the MS-MR-PT theory performed within the framework of the XMCQDPT theory unveils the origin of their common inherent problems. We describe the efficient implementation strategy that makes XMCQDPT2 an especially useful general-purpose tool in the high-level modeling of small to large molecular systems.     

The importance of spin-orbit coupling and electron correlation in the rationalization of the ground state of the CUO molecule

We present calculations at the relativistic coupled cluster theory that predict the (1)Sigma(0) (+) ground state of CUO to lie 58.2 kJ/mol below the first excited state, (3)Phi(2). This can be contrasted with the outcome of earlier density functional theory and complete active space second order perturbation theory (CASPT2) calculations that both predicted a (3)Phi(2) ground state upon inclusion of spin-orbit coupling in the calculations. Our result gives further justification to the interpretation of the measured frequency shifts of this species in various noble gas matrices as being caused by significant interaction between the uranium and the heavier noble gas atoms.     

氨基喹啉类生物碱抗疟原虫活性的理论研究

采用密度泛函理论(DFT),Becke三参数混合泛函方法(B3LYP),在6-311+G(d)基组水平,对21种氨基喹啉类化合物分子结构进行几何优化和量化计算.进而将量子化学参数作为基础参数,并结合物理化学参数作为独立变量,以抗疟原虫活性数据pIC50为应变量,运用多元线性回归,建立模型,并通过留一(LOO)交叉验证法对模型进行验证.结果表明C(8)与取代基R1之间的键长R(8,11)、最低空轨道与最高占据轨道之间的能量差εL-H、辛醇-水分配系数LogP、化合物的总能量ET、以及N(1)所带电荷Q(1)是影响氨基喹啉类化合物抗疟原虫活性的重要因素.本文所构建的模型具有良好的稳定性和预测能力,能用于对其抗疟原活性进行理论分析和预测,获得较好的结果.     

烷基取代对罗丹明的电子结构与光谱的影响

在密度泛函理论(DFT)的B3LYP水平对不同烷基在不同位置取代形成的8种罗丹明化合物进行结构优化,并在此基础上应用含时密度泛函理论(TD-DFT)和单激发组态相互作用(CIS)方法分析了取代基对罗丹明的电子结构、前线分子轨道及电子光谱的影响.计算结果表明,前线分子轨道主要分布在罗丹明分子的氧杂蒽环上,罗丹明分子中两个N端的H各只有1个H被烷基取代时,最高占据轨道(HOMO)在主要共轭环分布最多,且HOMO和最低未占据轨道(LUMO)分布比例相差最小,两个N端4个H同时被甲基取代时,能隙最窄,对气相最大吸收波长红移程度最大,两个N端4个H同时被乙基取代时,气相荧光最大,发射波长最长.     

The electronic spectrum of CUONg(4) (Ng = Ne, Ar, Kr, Xe): New insights in the interaction of the CUO molecule with noble gas matrices

The electronic spectrum of the CUO molecule was investigated with the IHFSCC-SD (intermediate Hamiltonian Fock-space coupled cluster with singles and doubles) method and with TD-DFT (time-dependent density functional theory) employing the PBE and PBE0 exchange-correlation functionals. The importance of both spin-orbit coupling and correlation effects on the low-lying excited-states of this molecule are analyzed and discussed. Noble gas matrix effects on the energy ordering and vibrational frequencies of the lowest electronic states of the CUO molecule were investigated with density functional theory (DFT) and TD-DFT in a supermolecular as well as a frozen density embedding (FDE) subsystem approach. This data is used to test the suitability of the FDE approach to model the influence of different matrices on the vertical electronic transitions of this molecule. The most suitable potential was chosen to perform relativistic wave function theory in density functional theory calculations to study the vertical electronic spectra of the CUO and CUONg(4) with the IHFSCC-SD method.     

Gaussian-4 theory using reduced order perturbation theory

Two modifications of Gaussian-4 (G4) theory [L. A. Curtiss et al., J. Chem. Phys. 126, 084108 (2007)] are presented in which second- and third-order perturbation theories are used in place of fourth-order perturbation theory. These two new methods are referred to as G4(MP2) and G4(MP3), respectively. Both methods have been assessed on the G3/05 test set of accurate experimental data. The average absolute deviation from experiment for the 454 energies in this test set is 1.04 kcalmol for G4(MP2) theory and 1.03 kcalmol for G4(MP3) theory compared to 0.83 kcalmol for G4 theory. G4(MP2) is slightly more accurate for enthalpies of formation than G4(MP3) (0.99 versus 1.04 kcalmol), while G4(MP3) is more accurate for ionization potentials and electron affinities. Overall, the G4(MP2) method provides an accurate and economical method for thermochemical predictions. It has an overall accuracy for the G3/05 test set that is much better than G3(MP2) theory (1.04 versus 1.39 kcalmol) and even better than G3 theory (1.04 versus 1.13 kcalmol). In addition, G4(MP2) does better for challenging hypervalent systems such as H(2)SO(4) and for nonhydrogen species than G3(MP2) theory.     

Gel mechanics: a comparison of the theories of Biot and Tanaka, Hocker, and Benedek

This article compares the Biot [J. Appl. Phys. 12, 155 (1941)] and Tanaka, Hocker, and Benedek (THB) [J. Chem. Phys. 59, 5151 (1973)] theories of gel deformation. Biot's theory treats the gel as a continuum with the pore pressure as a state variable whereas the THB theory treats the gel as a mixture of solid and liquid phases. We revisit the problem of gel deswelling and use this example to show that there can be substantial differences between the two theories. The THB theory is not a complete mixture theory since the displacements of the liquid are assumed to be negligibly small in comparison with the displacements of the network. We propose a simple extension of the THB model, which takes into account the momentum transfer of the liquid phase. We show that with this simple addition and some very reasonable assumptions, the extended THB theory is identical to the Biot theory.     

Comprehensive relativistic ab initio and density functional theory studies on PtH, PtF, PtCl, and Pt(NH(3))(2)Cl(2)

Platinum monohydride is taken as an example to compare the performance of various relativistic and correlation approaches, such as all-electron DPT (direct perturbation theory), ECP (effective core potential); RSPT2, RSPT3 (second- and third-order multireference Rayleigh-Schr?dinger perturbation theory), CCSD(T) (coupled-cluster with singles, doubles, and perturbative triples), as well as the four-component relativistic density functional theory. It is shown that first-order DPT performs significantly better than the (first-order) Breit-Pauli Hamiltonian. The performance of different approaches for the excitation energies of the platinum diatomics is discussed critically. The molecular spectroscopic constants for PtF and PtCl are predicted for the first time. The geometric data for several isomers of cis- and trans-Pt(NH(3))(2)Cl(2) are reported. The corresponding energetic data are calculated at relativistic all-electron and ECP-CCSD(T) as well as four-component relativistic density functional levels of theory. Contrary to previous results, it is found that the two C(2v) isomers of cis-Pt(NH(3))(2)Cl(2) are marginally separated in energy, which could be ascribed to Cl-H interactions.