NMR spectroscopic characterization of copper(II) and zinc(II) complexes of indomethacin

Molecular diffusion constants were studied by NMR spectroscopy to provide information about the solution structures of a variety of Cu(II) and Zn(II) monomeric and dimeric complexes of indomethacin (IndoH). These studies showed that monomeric Zn(II)-Indo complexes substantially dimerize in DMF-d7 and DMSO-d6 solutions at room temperature, whereas the Cu(II) and Zn(II) dinuclear complexes remain largely intact in these solutions. There is evidence of an equilibrium between monomers and dimers for the Zn(II) complexes in solution, as shown by a reduced diffusion constant and lower average radius compared to the Cu(II) dimer. Such an equilibrium between monomers and dimers for the Zn(II) complexes is also consistent with previous results obtained from XAFS analysis of DMF solutions of such complexes. The greater lability and lower thermodynamic stability of the Zn(II) dimer complex compared to the Cu(II) analogue, as determined from the NMR experiments, is likely to result in the more ready release of free Indo in the GI tract. This is consistent with the previously observed higher GI toxicities of the Zn-Indo pharmaceutical preparations compared to the Cu(II)-Indo counterparts.     

Effect of cyclodextrins on the physicochemical properties of chlorophyll a in aqueous solution

The interactions between chlorophyll a and two beta-cyclodextrins, that have the same cavity size but different substituents, were studied in aqueous solutions. These supramolecular host-guest complexes were examined by a combination of UV/vis absorption, circular dichroism, NMR, and steady-state and time-resolved fluorescence measurements. The results indicate that all cyclodextrins solubilize the pigment mainly in monomeric form in water. The pigment forms 1:1 complexes with the heptakis(2,3,6-tri-O-methyl)-beta-cyclodextrin and 1:2 complexes with the hydroxypropyl-beta-cyclodextrin. In such complexes the methyl groups of the cyclodextrin inner cavity are involved in the interaction with the pigment as evidenced by NMR measurements. We also measured the luminescence of singlet oxygen photosensitized by chlorophyll a in the inclusion complexes.     

Highly diastereoselective templated complexation of dipyrromethenes

[reaction: see text] Bis(dipyrromethene)s with relatively long spacers (>5 atoms) form helical monomeric complexes as the two binding units of the bis(dipyrromethene) chelate around the same tetrahedrally coordinated metal ion. Herein we report the first highly diastereoselective mononuclear helicate-forming complexation reactions of bis(dipyrromethene)s using homochiral binol and tartrate motifs which serve as both linkers and asymmetric templates.     

Synthesis,resolution, and reactivity of benzylmesitylphenylphosphine: a new p-chiral bulky ligand

The synthesis of P,P'-dimesityl-P,P'-diphenyldiphosphine and benzylmesitylphenylphosphine is described as well as the resolution of the latter ligand by means of homochiral organometallic complexes. The absolute configuration of the phosphine is assigned by NMR spectra, using the homochiral palladacycle as a reference point. The configuration has been confirmed by single crystal X-ray diffraction. Molecular mechanics calculations were performed in [PdCl-(R)-(+)-C10H6CH(Me)NH2(PBnMesPh)], and showed that the rotation around the Pd-P bond is restricted in this complex. [Pd(eta3-2-MeC3H4)Cl(PBnMesPh)] was obtained and used as a precursor in the catalytic hydrovinylation of styrene. Benzylmesitylphenylphosphine has a strong tendency to form phosphapalladacycles by activation of one of the ortho-methyl groups. The formation of this metallacycle from cyclopalladated N-donor derivatives by a ligand-exchange reaction is also described.     

Chiral monomeric and homochiral dimeric copper(II) complexes of a new chiral ligand, N-(1,2-bis(2-pyridyl)ethyl)pyridine-2-carboxamide: an example of molecular self-recognition

Reaction of Cu(ClO(4))(2) x 6H(2)O with a racemic mixture of the novel chiral ligand N-(1,2-bis(2-pyridyl)ethyl)pyridine-2-carboxamide (PEAH) affords only the homochiral dimeric copper(II) complexes [Cu(2)((R)()PEA)(2)](ClO(4))(2) and [Cu(2)((S)()PEA)(2)](ClO(4))(2) in a 1:1 ratio. The phenomenon of molecular self-recognition is also observed when a racemic mixture of the monomeric copper(II) complex [Cu((R(S))()PEA)(Cl)(H(2)O)] is converted into the homochiral dimeric species [Cu(2)((R(S))()PEA)(2)](ClO(4))(2) via reaction with Ag(+) ion. This is the first report of direct conversion of a racemic mixture of a chiral monomeric copper(II) complex to a mixture of the homochiral dimers.     

Syntheses of homochiral multinuclear ru complexes based on oligomeric bibenzimidazoles

The homochiral multinuclear Ru complexes of the oligomeric bibenzimidazoles were synthesized using Lambda-[Ru(bpy)2(py)2][(-)-O,O'-dibenzoyl-l-tartrate].12H2O as an enantiomerically pure building block. The complexations proceed with the retention of configuration to provide well-defined mononuclear, dinuclear, tetranuclear, and octanuclear Ru complexes successfully. The optical purity and the absolute configurations of the complexes were determined by NMR and circular dichroism spectrometry. The rare X-ray structure of a tetranuclear complex Lambda4-[(Ru(bpy)2)4(bis(BiBzIm))](PF6)4 was resolved. The crystallographic analysis reveals that all the four Ru centers have Lambda octahedral configurations, with a Ru-Ru separation of 5.509 A across the bridging bibenzimidazole ligand, which maintains near coplanarity. The UV-vis spectroscopic and electrochemical properties of the homochiral multinuclear assemblies were studied, indicating weak electronic communications between the metal centers.     

Enantiomeric self-recognition in homo- and heterodinuclear macrocyclic lanthanide(III) complexes

The controlled formation of lanthanide(III) dinuclear μ-hydroxo-bridged [Ln(2)L(2)(μ-OH)(2)X(2)](n+) complexes (where X = H(2)O, NO(3)(-), or Cl(-)) of the enantiopure chiral macrocycle L is reported. The (1)H and (13)C NMR resonances of these complexes have been assigned on the basis of COSY, NOESY, TOCSY, and HMQC spectra. The observed NOE connectivities confirm that the dimeric solid-state structure is retained in solution. The enantiomeric nature of the obtained chiral complexes and binding of hydroxide anions are reflected in their CD spectra. The formation of the dimeric complexes is accompanied by a complete enantiomeric self-recognition of the chiral macrocyclic units. The reaction of NaOH with a mixture of two different mononuclear lanthanide(III) complexes, [Ln(1)L](3+) and [Ln(2)L](3+), results in formation of the heterodinuclear [Ln(1)Ln(2)L(2)(μ-OH)(2)X(2)](n+) complexes as well as the corresponding homodinuclear complexes. The formation of the heterodinuclear complex is directly confirmed by the NOESY spectra of [EuLuL(2)(μ-OH)(2)(H(2)O)(2)](4+), which reveal close contacts between the macrocyclic unit containing the Eu(III) ion and the macrocyclic unit containing the Lu(III) ion. While the relative amounts of homo- and heterodinuclear complexes are statistical for the two lanthanide(III) ions of similar radii, a clear preference for the formation of heterodinuclear species is observed when the two mononuclear complexes contain lanthanide(III) ions of markedly different sizes, e.g., La(III) and Yb(III). The formation of heterodinuclear complexes is accompanied by the self-sorting of the chiral macrocyclic units based on their chirality. The reactions of NaOH with a pair of homochiral or racemic mononuclear complexes, [Ln(1)L(RRRR)](3+)/[Ln(2)L(RRRR)](3+), [Ln(1)L(SSSS)](3+)/[Ln(2)L(SSSS)](3+), or [Ln(1)L(rac)](3+)/[Ln(2)L(rac)](3+), results in mixtures of homochiral, homodinuclear and homochiral, heterodinuclear complexes. On the contrary, no heterochiral, heterodinuclear complexes [Ln(1)L(RRRR)Ln(2)L(SSSS)(μ-OH)(2)X(2)](n+) are formed in the reactions of two different mononuclear complexes of opposite chirality.     

An unusual base-controlled equilibrium between monomeric and dimeric nickel(IV)–dimethylglyoxime complexes

Ionic nickel(IV)–dimethylglyoxime complexes have been prepared by oxidation of nickel(II)–dimethylglyoxime in alkaline solutions with ferricyanide. A novel base-controlled equilibrium is demonstrated between the monomeric and dimeric nickel(IV)–dimethylglyoxime complexes in solution. The oxidation state of nickel as +4 is confirmed by titration with hydroxylamine salt. The results obtained from the UV/VIS spectrophotometry, titrimetry, infrared and NMR studies are discussed.     

Pairing of propellers: dimerization of octahedral ruthenium(II) and osmium(II) complexes of eilatin via pi-pi stacking featuring heterochiral recognition

Five octahedral eilatin complexes of the type [M(L-L)(2)(eilatin)](2+) (M = Ru, Os; L-L = bipyridyl-type ligands) were synthesized, and their dimerization via pi-pi stacking was studied by crystallography and (1)H NMR techniques. The X-ray structures of these racemic complexes were solved and revealed that the eilatin complexes are organized as discrete dimers in which the eilatin residues of each complex are stacked in centrosymmetric packing. Chemical shift dependence on concentration in the (1)H NMR spectra support fast dimer-monomer equilibrium, and the structures of the dimers in acetonitrile solution are proposed to be analogous to their solid-state structures. Dimerization constants in acetonitrile were measured for the five racemic eilatin complexes that exhibit different structural parameters, as well as for the two enantiomeric forms of one of these complexes. They were found to be independent of the metal (Ru vs Os), strongly dependent on the steric effects introduced by the L-L ligands (2,2'-bipyridine, 1,10-phenanthroline, 2,9-dimethyl-1,10-phenanthroline, and 2,2'-biquinoline), and dependent on the optical purity of the complexes. A clear preference for heterochiral over homochiral dimer formation was demonstrated. This is the first report of chiral recognition in solution, exhibited by simple chemical systems held solely by pi-stacking interactions.     

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

The structure determination of protein-protein complexes is a rather tedious and lengthy process, by both NMR and X-ray crystallography. Several methods based on docking to study protein complexes have also been well developed over the past few years. Most of these approaches are not driven by experimental data but are based on a combination of energetics and shape complementarity. Here, we present an approach called HADDOCK (High Ambiguity Driven protein-protein Docking) that makes use of biochemical and/or biophysical interaction data such as chemical shift perturbation data resulting from NMR titration experiments or mutagenesis data. This information is introduced as Ambiguous Interaction Restraints (AIRs) to drive the docking process. An AIR is defined as an ambiguous distance between all residues shown to be involved in the interaction. The accuracy of our approach is demonstrated with three molecular complexes. For two of these complexes, for which both the complex and the free protein structures have been solved, NMR titration data were available. Mutagenesis data were used in the last example. In all cases, the best structures generated by HADDOCK, that is, the structures with the lowest intermolecular energies, were the closest to the published structure of the respective complexes (within 2.0 A backbone RMSD).     

Asymmetric nickel-catalyzed hydrocyanation of vinylarenes by applying homochiral xantphos ligands

New homochiral xantphos-type diphosphonite ligands with binaphthoxy substituents have been prepared and characterized by NMR spectroscopy. These ligands have been applied in the nickel-catalyzed hydrocyanation of styrene and other vinylarenes. Enantioselectivities up to 63% ee have been obtained by using 4-isobutylstyrene as a substrate. Addition of an excess of ligand strongly inhibits the hydrocyanation reaction since the bis-chelate nickel complexes formed are highly stable and catalytically inactive.     

Stereochemically stable double-helicate dinuclear complexes of bis(dipyrromethene)s: a chiroptical study

Helical zinc(II) complexes of bis(dipyrromethene)s bearing homochiral amide substituents were synthesized. Analysis of the products by chiral HPLC showed two diastereomeric major products and showed that dipyrromethene double-nuclear helicates are stereochemically stable and do not interconvert. Circular dichroism (CD) studies showed that the complexation reactions had proceeded with modest diastereomeric excesses. Analysis of an analogous symmetric zinc(II) bis(dipyrromethene) lacking homochiral substituents that could act as chromophores discounted induced CD by the chiral auxiliaries.     

Ag (I)-based 2D metal frameworks with helical structures decorated by the homochiral camphor-10-sulfonic acid

Two two-dimension homochiral Ag (I) metal frameworks constructed from enantiopure camphor-10-sulfonic acid and hexamethylenetetramine have been synthesized at the room temperature. These two complexes with (6, 3) topology decorated by the homochiral camphor-10-sulfonic acid possess the unique helical structures. The result of Circular Dichroism (CD) spectroscopy confirms that the bulk materials are homochiral and also indicates the handedness of the single crystals can be controlled by the chirality of the camphor-10-sulfonic acid.     

Self and nonself recognition of chiral catalysts: the origin of nonlinear effects in the amino-alcohol catalyzed asymmetric addition of diorganozincs to aldehydes

Asymmetric addition of dialkylzincs to aldehydes in the presence of (2S)-3-exo-(dimethylamino)isoborneol [(S)-DAIB] exhibits various nonclassical phenomena. The enantiomeric excess (ee) of the alkylation product, obtained with partially resolved DAIB, is much higher than that of the chiral amino alcohol, while the rate decreases considerably as the ee of DAIB is lowered. The asymmetric amplification effects reflect the relative turnover numbers of two enantiomorphic catalytic cycles, where an essential feature is the reversible homochiral and heterochiral dimerization of the coexisting enantiomeric DAIB-based Zn catalysts. The interplay between the thermodynamics of the monomer/dimer equilibration and the kinetics of alkylation reaction strongly affect the overall profile of asymmetric catalysis. The self and nonself recognition of the chiral Zn catalysts is a general phenomenon when (S)-DAIB is mixed with its enantiomer, diastereomer, or even an achiral beta-amino alcohol. The degree of nonlinearity is highly affected not only by the structures and purity of catalysts but also by various reaction parameters. The salient features have been clarified on the basis of molecular weight measurements, NMR and X-ray crystallographic studies of organozinc complexes, and kinetic experiments, as well as computer-aided quantitative analysis.     

Self-assembly of dialkyltin(IV) moieties and aromatic dicarboxylates to complexes with a polymeric or a discrete trinuclear macrocyclic structure in the solid state and a mixture of fast interchanging cyclooligomeric structures in solution

It is well-known that the structures of trialkyltin(IV) carboxylates can be either monomeric, polymeric, or cyclooligomeric in the solid state. In contrast, all dialkyltin(IV) dicarboxylates characterized so far in the solid state have monomeric or polymeric structures, however, for some cases it has been proposed that their solution-state structure is cyclooligomeric. In order to generate more information on this subject, dimethyl- and di-n-butyltin(IV) complexes with phthalic and isophthalic acid have been prepared and analyzed both in solution and in the solid state. The solid-state structures of the two dialkyltin(IV) phthalates examined herein contain polymeric molecular chains, however, with supramolecular Sn.O' interactions, which result in the generation of cyclooligomeric units. This provides evidence for the presence of discrete cyclooligomeric structures in solution, which are involved in fast dynamic exchange equilibria as evidenced by (1)H, (13)C, and (119)Sn NMR spectroscopy. In the case of the two dialkyltin(IV) isophthalate complexes studied herein (R = Me, n-Bu), only the di-n-butyltin derivative is soluble and NMR spectroscopy as well as FAB(+) spectrometry indicates the formation of cyclic dinuclear, trinuclear, and/or tetranuclear species in solution, which may be involved also in fast dynamic exchange equilibria. In the solid state, however, discrete cyclotrinuclear units can be identified, in which the 24-membered macrocyclic cavity is almost completely planar, having six oxygen atoms directed into its interior and six Sn-n-butyl groups approximately perpendicular to the molecular plane. The diameter of the cyclic cavity can be described by the transannular O.O distances that vary from 7.68 to 7.84 A, being large enough for the introduction of linear alkyl groups. This can be demonstrated by the supramolecular structure of this compound, which contains a new type of bis[2]pseudorotaxane formed between two molecules through mutual threading via two of the Sn-butyl groups. Such a supramolecular entity has been unknown so far, since the usual composition of bis[2]pseudorotaxanes is the trimolecular combination of a macrocyclic ring system with two threads.     

Enantioselective cyclization of racemic supramolecular polymers

Homochiral hydrogen-bonded cyclic assemblies are formed in dilute solutions of racemic supramolecular polymers based on the quadruple hydrogen bonding 2-ureido-4[1H]-pyrimidinone unit, as observed by 1H NMR and SEC experiments. Preorganization of the monomers and the combined binding strength of the eight hydrogen bonds result in a very high stability of the cyclic aggregates with pronounced selectivity between homochiral and heterochiral cyclic species, usually only observed in crystalline or liquid crystalline phases.     

Paramagnetic-based NMR restraints lift residual dipolar coupling degeneracy in multidomain detergent-solubilized membrane proteins

Residual dipolar couplings (RDCs) are widely used as orientation-dependent NMR restraints to improve the resolution of the NMR conformational ensemble of biomacromolecules and define the relative orientation of multidomain proteins and protein complexes. However, the interpretation of RDCs is complicated by the intrinsic degeneracy of analytical solutions and protein dynamics that lead to ill-defined orientations of the structural domains (ghost orientations). Here, we illustrate how restraints from paramagnetic relaxation enhancement (PRE) experiments lift the orientational ambiguity of multidomain membrane proteins solubilized in detergent micelles. We tested this approach on monomeric phospholamban (PLN), a 52-residue membrane protein, which is composed of two helical domains connected by a flexible loop. We show that the combination of classical solution NMR restraints (NOEs and dihedral angles) with RDC and PRE constraints resolves topological ambiguities, improving the convergence of the PLN structural ensemble and giving the depth of insertion of the protein within the micelle. The combination of RDCs with PREs will be necessary for improving the accuracy and precision of membrane protein conformational ensembles, where three-dimensional structures are dictated by interactions with the membrane-mimicking environment rather than compact tertiary folds common in globular proteins.     

Chiral recognition and conglomerate crystallization induced by self-organization of cobalt(III) complexes of a tripodal ligand containing three imidazole groups

The effect of a counteranion on chiral recognition inducing conglomerate crystallization of a cobalt(III) complex is reported. An achiral tripodal ligand involving three imidazole groups, tris{[2-{(imidazol-4-yl)methylidene}amino]ethyl}amine (H3L), was prepared by condensation of tris(2-aminoethyl)amine and 4-formylimidazole in a 1:3 mole ratio. The reaction of H3L and trans-[CoIIICl2(py)4]+ afforded the chiral (Delta or Lambda) [CoIII(H3L)]3+ complex. The formally hemideprotonated complexes [CoIII(H(1.5)L)]X(1.5).nH2O (where X = Cl, Br, I, BF4, ClO4, or PF6) were synthesized by controlled deprotonation of the uncoordinated imidazole NH groups of [Co(H3L)]3+. In crystals of the hemideprotonated complex, two components, [Co(H3L)]3+ and [Co(L)], with the same absolute configuration are linked by imidazole-imidazolate hydrogen bonds to form an extended homochiral 2D sheet structure, which is composed of a hexanuclear unit with a trigonal void. There are two ways of stacking the sheets: One is via homochiral stacking, and the other is via heterochiral stacking. When the size of the counterion is small (i.e., X = Cl, Br, I, or BF4), adjacent homochiral sheets with the same chirality are stacked to form a homochiral crystal (conglomerate). With large anions (i.e., ClO4- and PF6-), a homochiral sheet consisting of Delta enantiomers and a sheet consisting of Lambda enantiomers are stacked alternately to give a heterochiral crystal (a racemic crystal). Optically active Lambda-[Co(H(1.5)L)](ClO4)(1.5).H2O was synthesized from Lambda-[Co(H3L)]3+, and the crystal structure was compared to that of the racemic complex. There are two conflicting factors governing the crystal structure: the skeletal density; the size of the channels. The 2D sheets are more closely packed in the homochiral crystal than in the heterochiral crystal. However, the channels, where the counterions are accommodated, are smaller in the homochiral crystal, and the steric congestion between the anions increases with increasing anion size. The heterochiral crystal has a flexible, zigzag channel structure, and the size of the channels can increase to accommodate larger anions. Thus, complexes with large anions (i.e., ClO4- and PF6-) preferentially form heterochiral crystals rather than homochiral crystals.     

Bistable copper complexes of bis-thia-bis-quinoline ligands

The new ligands R,R-trans-S,S'-bis[methyl(2'-quinolyl)]-1,2-dithiacyclohexane, cis-S,S'-bis[methyl(2'-quinolyl)]-1,2-dithiacyclohexane, and 1,6-bis(2'-quinolyl)-2,5-dithiahexane have been synthesized and their complexes with Cu(I) and Cu(II) prepared. The ligand/metal systems are bistable, as the complexes with copper in both its oxidation states are stable under the same conditions as solids and in solution. The crystal and molecular structure of [Cu(I)(1,6-bis(2'-quinolyl)-2,5-dithiahexane)]ClO(4) has been determined by X-ray diffraction and reveals that the complex is monomeric, with the ligand folding around the Cu(+) cation, imparting to it a tetrahedral coordination. UV-vis, MS-ESI, and NMR data indicate that the same is found for the Cu(I) complexes of all three ligands. Also, the Cu(II) complexes are monomeric, but with a square arrangement of the ligands around Cu(2+). On changing the oxidation state, the change in the geometrical arrangement is fast and complete in less than 80 ms, as demonstrated by cyclic voltammetry experiments. In the CV profiles, the oxidation and reduction events take place at separated E(ox) and E(red) values, with no return wave even at the fastest scan rates. In the E(ox)-E(red) interval (which ranges from 450 to 650 mV, depending on the ligand), the ligand/copper system can thus exist in one of its two states, depending on its history, and thus display electrochemical hysteretical behavior. The electrochemical cycle leading from the tetrahedral [Cu(I)(ligand)](+) to the square [Cu(II)(ligand)](2+) complex (and vice versa) is reversible and repeatable without degradation, as checked by coupled UV-vis-controlled potential coulometry experiments.     

Novel Monomeric Phenanthroline - Thallium(III) Complexes Multinuclear NMR Characterization in Organic Solvents

Thallium(III) complexes with nitrogen donor ligands constitute an interesting field in coordination chemistry. Phenanthroline is an extremely stiff organic ligand. The stability constants of its coordination compounds with Tl(III) have been investigated in aqueous solution by potentiometer1. 205Tl NMR technique has provided an effective method to study the thallium(III) solution chemistry. Thallium(III) coordination chemistry has attracted considerable attention recently for its ric…