2-溴丙酸气相热消除反应的机理

用密度泛函（DFT）方法,在B3LYP/6-31G**水平上对2-溴丙酸气相消除反应机理进行了研究.计算表明,反应主要是通过半极化五元环结构过渡态进行的,羧基上的氢原子协助溴原子离去,羧基氧原子帮助稳定过渡态.在B3LYP/6-311＋＋G(3df,3pd)水平上对B3LYP/6-31G**优化的几何构型进行了单点能计算,计算所得反应的速度控制步骤的活化能为189.461 kJ•mol－1,偏离实验值((180.3±3.4) kJ•mol－1)5.08％.     

Theoretical Studies on Structures and Stabilities of C4H2+ Isomers

The structures, energies, stabilities and spectroscopies of doublet C₄H₂⁺ cations were explored at the DFT/B3LYP/6-311G(d,p), CCSD(T)/6-311+G(2df,2pd)(single-point), and G3B3 levels. Ten minimum isomers including the chainlike, three-member-ring, and four-member-ring structures are interconverted by means of 15 interconversion transition states. The potential energy surface was investigated. At the CCSD(T)/6-311+G(2df,2pd) and G3B3 levels, the global minimum isomer was found to be a linear HCCCCH. The structures of the stable isomer and its relevant transition state are further optimized at the QCISD/6-311G(d,p) level. The bonding nature and structure of isomer HCCCCH were analyzed.     

FC(O)O自由基与NO2反应的量子化学研究

用量子化学DFT, MP2, G3和G3MP2方法对FC(O)O自由基与NO₂的反应机理进行了理论研究. 优化了反应势能面上各驻点的几何结构, 通过内禀反应坐标(IRC)计算和振动分析, 确认了反应中的过渡态, 并用过渡态理论(TST)计算了相关反应的速率常数.     

The molecular structure of fluoromalononitrile as determined by gas-phase electron diffraction and ab initio calculations

The molecular structure of fluoromalononitrile was studied by means of gas-phase electron diffraction and quantum mechanical methods using HF/6-31G(d), MP2/6-311++G(2df,2pd) and DFT/B3LYP/6-31G(d), B3PW91/6-31G(d), B3LYP/6-311++G(2df,2pd) and B3PW91/6-311++G(2df,2pd). The r(g) and angle(alpha) structural parameters we obtained from the present analysis are: CC=1.487(5) A, CN=1.157(3) A, CF=1.386(5) A, CH=1.096 A (ass.), angleCCC=106.7(1.0) degrees , angleCCF=108.0(0.7) degrees , angleCCN=177.6(2.0) degrees . Uncertainties in parenthesis are 3sigma.     

Benchmark of density functional theory methods on the prediction of bond energies and bond distances of noble-gas containing molecules

We have tested three pure density functional theory (DFT) functionals, BLYP, MPWPW91, MPWB95, and ten hybrid DFT functionals, B3LYP, B3P86, B98, MPW1B95, MPW1PW91, BMK, M05-2X, M06-2X, B2GP-PLYP, and DSD-BLYP with a series of commonly used basis sets on the performance of predicting the bond energies and bond distances of 31 small neutral noble-gas containing molecules. The reference structures were obtained using the CCSD(T)∕aug-cc-pVTZ theory and the reference energies were based on the calculation at the CCSD(T)∕CBS level. While in general the hybrid functionals performed significantly better than the pure functionals, our tests showed a range of performance by these hybrid functionals. For the bond energies, the MPW1B95∕6-311+G(2df,2pd), BMK∕aug-cc-pVTZ, B2GP-PLYP∕aug-cc-pVTZ, and DSD-BLYP∕aug-cc-pVTZ methods stood out with mean unsigned errors of 2.0-2.3 kcal∕mol per molecule. For the bond distances, the MPW1B95∕6-311+G(2df,2pd), MPW1PW91∕6-311+G(2df,2pd), and B3P86∕6-311+G(2df,2pd), DSD-BLYP∕6-311+G(2df,2pd), and DSD-BLYP∕aug-cc-pVTZ methods stood out with mean unsigned errors of 0.008-0.013 A? per bond. The current study showed that a careful selection of DFT functionals is very important in the study of noble-gas chemistry, and the most recommended methods are MPW1B95∕6-311+G(2df,2pd) and DSD-BLYP∕aug-cc-pVTZ.     

Microwave spectrum of 3-butyne-1-thiol: evidence for intramolecular S-H...pi hydrogen bonding

The microwave spectrum of 3-butyne-1-thiol has been studied by means of Stark-modulation microwave spectroscopy and quantum-chemical calculations employing the B3LYP/6-311++G(3df,2pd), MP2/aug-cc-pVTZ, MP2/6-311++G(3df,2pd), and G3 methods. Rotational transitions attributable to two conformers of this molecule were assigned. One of these conformers possesses an antiperiplanar arrangement of the atoms S-C1-C2-C3, while the other is synclinal and stabilized by the formation of an intramolecular hydrogen bond between the H-atom of the thiol group and the pi-electrons of the C[triple bond]C triple bond. The energy difference between these conformers was estimated to be 1.7(4) kJ mol(-1) by relative intensity measurements, with the hydrogen-bonded conformer being lower in energy. The spectra of five vibrationally excited states of the synclinal conformer were observed, and an assignment of these states to particular vibrational modes was made with the aid of a density functional theory (DFT) calculation of the vibrational frequencies at the B3LYP/6-311++G(3df,2pd) level of theory.     

O（~1D）与CF_2HCl反应的理论研究

用量子化学密度泛函理论（DFT）和G3B3方法，对为（~1D）与CF_2HCl的反应 进行了研究，在B3LYP/6-311+G(d)，B3LYP/6-311+G(2df,2pd)和G3B3计算水平上， 优化了反应热能面上各驻点的几何结构，通过内禀反应坐标（IRC）计算和振动分 析，对反应过渡态进行了确认，并确定了反应机理。     

Ab initio studies of the conformers and conformational distribution of the gaseous hydroxyamino acid threonine

Systematic and extensive conformational search has been performed to characterize the gas-phase threonine structures. A total of 1296 unique trial structures were generated by allowing for all combinations of internal single-bond rotamers. All the trial structures were optimized at the B3LYP/6-311G* level of the theory and then subjected to further optimization at the B3LYP/6-311++G** level. A total of 71 conformers were found and their rotational constants, dipole moments, zero-point vibrational energies, harmonic frequencies and vertical ionization energies of all the conformers were determined. Single-point energies were also calculated at the MP2/6-311G(2df,p) and B3LYP/6-311G(2df,p) levels. Characteristic H-bonding types were classified and listed for all the conformers. The conformational distributions of gaseous threonine at various temperatures were calculated.     

An evaluation of various computational methods for the treatment of organoselenium compounds

A reliable computational method for the prediction of organoselenium geometries and bond dissociation energies (BDEs) has been determined on the basis of the performance of density functional theory (DFT: B3LYP and B3PW91) and ab initio molecular orbital procedures (Hartree-Fock (HF)) in conjunction with various Pople basis sets including (but not limited to) the 6-31G(d), 6-31G(d,p), 6-311G(d), 6-311G(d,p), 6-311G(2df,p), and 6-311G(3df,3pd) sets. Predicted geometries and BDEs are compared with available experimental data and quadratic configuration interaction including single and double substitutions (QCISD) results. The B3PW91/6-311G(2df,p) level of theory is recommended for the prediction of the geometries and energetics of organoselenium compounds.     

TDDFT investigation on nucleic acid bases: comparison with experiments and standard approach

A comprehensive theoretical study of electronic transitions of canonical nucleic acid bases, namely guanine, adenine, cytosine, uracil, and thymine, was performed. Ground state geometries were optimized at the MP2/6-311G(d,p) level. The nature of respective potential energy surfaces was determined using the harmonic vibrational frequency analysis. The MP2 optimized geometries were used to compute electronic vertical singlet transition energies at the time-dependent density functional theory (TDDFT) level using the B3LYP functional. The 6-311++G(d,p), 6-311(2+,2+)G(d,p), 6-311(3+,3+)G(df,pd), and 6-311(5+,5+)G(df,pd) basis sets were used for the transition energy calculations. Computed transition energies were found in good agreement with the corresponding experimental data. However, in higher transitions, the Rydberg contaminations were also obtained. The existence of pisigma* type Rydberg transition was found near the lowest singlet pipi* state of all bases, which may be responsible for the ultrafast deactivation process in nucleic acid bases.     

Formic acid catalyzed hydrolysis of SO3 in the gas phase: a barrierless mechanism for sulfuric acid production of potential atmospheric importance

Computational studies at the B3LYP/6-311++G(3df,3pd) and MP2/6-311++G(3df,3pd) levels are performed to explore the changes in reaction barrier height for the gas phase hydrolysis of SO(3) to form H(2)SO(4) in the presence of a single formic acid (FA) molecule. For comparison, we have also performed calculations for the reference reaction involving water assisted hydrolysis of SO(3) at the same level. Our results show that the FA assisted hydrolysis of SO(3) to form H(2)SO(4) is effectively a barrierless process. The barrier heights for the isomerization of the SO(3)···H(2)O···FA prereactive collision complex, which is the rate limiting step in the FA assisted hydrolysis, are found to be respectively 0.59 and 0.08 kcal/mol at the B3LYP/6-311++G(3df,3pd) and MP2/6-311++G(3df,3pd) levels. This is substantially lower than the ~7 kcal/mol barrier for the corresponding step in the hydrolysis of SO(3) by two water molecules--which is currently the accepted mechanism for atmospheric sulfuric acid production. Simple kinetic analysis of the relative rates suggests that the reduction in barrier height facilitated by FA, combined with the greater stability of the prereactive SO(3)···H(2)O···FA collision complex compared to SO(3)···H(2)O···H(2)O and the rather plentiful atmospheric abundance of FA, makes the formic acid mediated hydrolysis reaction a potentially important pathway for atmospheric sulfuric acid production.     

An exploration of conformational search of leucine molecule and their vibrational spectra in gas phase using ab initio methods

An extensive exploration of the conformational space has been carried out to characterize all possible gas phase structures of leucine. A total of 324 unique trial structures for canonical leucine were generated by considering all possible combinations of single bond rotamers. All trial structures were optimized at the B3LYP/6-311G* level of the DFT method. A total of 77 unique and stationary canonical conformers were found. Further, 15 most stable conformers were reoptimized at B3LYP/6-311++G** level and their respective relative energies, vertical ionization energies, hydrogen bonding patterns, rotational constants and dipole moments were calculated. A single point energy calculations for leucine conformers have also been done at both B3LYP/6-311++G(2df, p) and MP2/6-311++G(2df, p) levels. The good agreement between our estimates of rotational constants for two most stable conformers and available experimental measurements supports the reliability of the B3LYP/6-311++G** level of theory for describing the conformational behavior of leucine molecule. The proton affinity and gas phase basicity were also determined. Using the statistical approach, conformational distributions at various temperatures have also been performed and analyzed. Vibrational spectra were also calculated. It is also observed that zwitterions of leucine are not stable in gas phase.     

锗烯与异硫氰酸反应机理的量子化学研究

采用密度泛函理论B3LYP方法研究了GeH2自由基与HNCS的反应机理,并在B3LYP/6-311++G**水平上对反应物,中间体,过渡态进行了全几何参数优化,通过频率分析和IRC确定中间体和过渡态。为了得到更精确的能量值,用QCISD(T)/6-311++G**方法计算了各个驻点的单点能,计算结果表明单重态的锗烯与异硫氰酸的反应有抽提硫、插入N-H键、抽提亚氨基的路径,而经由三元环中间体的抽提硫反应GeH2+HNCS→IM3→TS2→IM4→TS3→IM5→GeH2S+HNC(P1),反应能垒最低,为主反应通道,甲锗硫醛和异氰氢酸为主产物。锗烯经由四元环中间体抽提硫的反应为竞争反应通道。     

One-photon mass-analyzed threshold ionization spectroscopy of 2-chloropropene (2-C3H5Cl) and its vibrational assignment based on the density-functional theory calculations

A high-quality mass-analyzed threshold ionization (MATI) spectrum of 2-chloropropene, 2-C3H5Cl, is reported. Its ionization energy determined for the first time from the 0-0 band position was 9.5395+/-0.0006 eV. Almost all the peaks in the MATI spectrum could be vibrationally assigned utilizing the frequencies calculated at the B3LYP6-311++G(3df,3pd) level and the Franck-Condon factors calculated with the molecular parameters obtained at the same level. In particular, the observed methyl torsional progression could be reproduced very well through quantum-mechanical calculations using the molecular parameters obtained at this level. Dramatic lowering of the torsional barrier inferred from the experimental data was entirely compatible with the B3LYP6-311++G(3df,3pd) results. The torsional barrier and the internal rotational constant determined by fits to six torsional peaks were 53.6 and 5.20 cm(-1), respectively. A brief discussion at the level of molecular orbital is presented to account for the dramatic lowering of the torsional barrier upon ionization.     

Protonated acetylene revisited

The potential energy surface for protonated acetylene has been re-examined with large basis sets and highly correlated methods. The energy difference of 3.6–3.8 kcal/mol between the classical structure and non-classical (bridged) structure computed with CCSD (T)/cc-pVQZ, CCSD(T)/6-311+G(3df,2pd), BD(T)/cc- pVQZ, BD(T)/6-311+G(3df,2pd) and CBS-APNO methods is in very good agreement with the best previous calculations, 3.7–4.0 kcal/mol. In contrast, BLYP, B3LYP, PW91, PBE and TPSS density functional methods do rather poorly, yielding −0.52. 0.29, 1.81, 2.16 and 0.62 kcal/mol, respectively, with the 6-311+G(3df,2pd) basis. MP2 calculations predict the classical structure to be a transition state; however, frequency calculations at the CCSD/6-311+G(3df,2pd) level of theory show that the classical structure is a local minimum. CCSD(T), BD(T) and CBS-APNO energy calculations along the MP2/6-311+G(3df,2pd) reaction path indicate that the classical structure is a shallow local minimum separated from the non-classical structure by a very small barrier of 0.11–0.13 kcal/mol. Because the barrier for proton exchange between the non-classical isomers via the classical structure is broad and nearly flat at the top, the tunneling splitting should be reduced, possibly accounting for the 15% difference between the calculated and experimental barrier heights. Contribution to the Fernando Bernardi Memorial Issue.     

Basis set and method dependence in quantum theory of atoms in molecules calculations for covalent bonds

The influence of various small- and medium-size basis sets used in Hartree-Fock (HF) and density functional theory (DFT)/B3LYP calculations on results of quantum theory of atoms in molecules based (QTAIM-based) analysis of bond parameters is investigated for several single, double, and triple covalent bonds. It is shown that, in general, HF and DFT/B3LYP methods give very similar QTAIM results with respect to the basis set. The smallest 6-31G basis set and DZ-quality basis sets of Dunning type lead to poor results in comparison to those obtained by the most reliable aug-cc-pVTZ. On the contrary, 6-311++G(2df,2pd) and in a somewhat lesser extent 6-311++G(3df,3pd) basis sets give satisfactory values of QTAIM parameters. It is also demonstrated that QTAIM calculations may be sensitive for the method and basis set in the case of multiple and more polarized bonds.     

CH2FCF3与O(1D)反应机理的理论研究

用量子化学密度泛函理论(DFT)和G3(MP2)B3方法,对O(1↑D)与CH2FCF3的反应进行了研究．在UB3LYP/6-31G(d)计算水平上,优化了反应势能面上各驻点的几何结构,在G3(MP2)B3水平上进行了单点计算,并利用UB3LYP/6-311 G(3df,3pd)计算的波函数进行了电荷密度分析．通过内禀坐标(IRC)计算和振动分析,对反应过渡态进行了确认,并确定了反应机理．     

脯氨酸的构象及性质

用X3LYP法在6-311++G(d, p)和6-311++G(3df, 3pd)基组水平上对脯氨酸15种构象的几何结构、相对能量、电子结构、红外光谱、偶极矩、极化率等性质进行了研究, 并与PBE1PBE/6-311++G(d, p)的结果和文献相比较, 从而得到: (1) 的脯氨酸的15种构象中能量最低的有4种, 不同构象中存在着强弱不同的5种氢键, 其中以N…H—O氢键最强, 并存在特殊的C—H…O=C氢键. 两种方法计算的几何结构数据相近, 均与实验值吻合; (2) 在构象相对能差计算方面, X3LYP具有明显的优势, 用中等基组就可以得到与高水平从头算法和大基组相同的结果, 而PBE1PBE法计算的相对能值则相差较大; (3) 脯氨酸不同构象中偶极矩最大和极化率最小的是最稳定的构象1和2, 两种方法计算的结果一致.     

HNCX→HXCN(X=O, S, Se)反应的量子拓扑研究

The reactions of HNCO to HOCN, HNCS to HSCN and HNCSe to HSeCN have been studied at MP2/6-311 ＋ ＋ G（2df, pd）//B3LYP/6-311 ＋ ＋G（2df, pd） level. Geometries of the reactants, transition states and products have been optimized and geometries of the transition states are reported for the first time. The reasons why HNCO and HNCS instead of HOCN and HSCN were easily detected have been explained. It was predicted that HNCSe will be more easily detected than HSeCN. The breakage and formation of the chemical bonds in the reactions have been discussed by the topological analysis method of electronic density. The calculated results show that there are two kinds of structure transition states （STS） in reactions studied.     

F原子与瞬态自由基CH_2SH反应的理论研究

用量子化学从头算和密度泛函理论（DFT）对F原子与自由基CH_2SH在势能面上 的反应进行了研究。在B3LYP/6-311G水平上计算出了各物种的优化构型、振动频率 和零点振动能(ZPVE);各物种的总能量由B3LYP/6-311 + G(2df, pd)//B3LYP/6- 311G计算,另外对反应物和产物还计算了其G3能量。结果表明：首先F通过与C或S 结合的两种途径与CH_2SH相配位,再通过H（4）原子转移形成甲基,然后甲基再旋 转,甲基中H（4）原子最终与F结合,反应产物为HF和CH_2S。反应为放热反应,分 别为ΔH_r = -370.7 kJ/mol (DFT)和-396.94 kJ/mol (G3)。此外依据计算出的反 应热,可得自由基·CH_2SH的生成热Δ_fH°_(298.15) = 146.44 kJ/mol (DFT), 而Δ_fH°_0 = 167.36 kJ/mol (G3)。它们与以前的实验和理论值是一致的。